NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|893155375|emb|CNJ89224|]
View 

SWIM/SEC-C metal-binding motif protein%2C PBPRA1643 family [Yersinia pseudotuberculosis]

Protein Classification

YchJ family protein( domain architecture ID 11479692)

YchJ family protein similar to Escherichia coli UPF0225 protein YchJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-154 1.95e-110

hypothetical protein; Provisional


:

Pssm-ID: 234966  Cd Length: 154  Bit Score: 310.04  E-value: 1.95e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   1 MSELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893155375  81 IAETPGRHPDEAFVEFIARFTDADNAQITAMHERSRFLRIKEHWYYIDGIRPSLGRNDTCLCGSGKKHKKCCGR 154
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGRTAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-154 1.95e-110

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 310.04  E-value: 1.95e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   1 MSELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893155375  81 IAETPGRHPDEAFVEFIARFTDADNAQITAMHERSRFLRIKEHWYYIDGIRPSLGRNDTCLCGSGKKHKKCCGR 154
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGRTAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-150 1.48e-71

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 211.63  E-value: 1.48e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   3 ELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTVIA 82
Cdd:COG3012    4 SPCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 893155375  83 ETPGRHPDEAFVEFIARFTDADNAQitAMHERSRFLRIKEHWYYIDG-IRPSLGRndtclcGSGKKHKK 150
Cdd:COG3012   84 TEAGPDDDEGTVEFVARYREGGRAG--RLHERSRFVREDGRWYYVDGeVAPKPGR------GSGKKFKK 144
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 33-129 1.33e-44

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 141.55  E-value: 1.33e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   33 LMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTVIAETPGRHPDEAFVEFIARFTDADnaQITAMH 112
Cdd:pfam17775   5 LMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGG--QLQTLH 82

                          90
                  ....*....|....*..
gi 893155375  113 ERSRFLRIKEHWYYIDG 129
Cdd:pfam17775  83 ERSRFVREDGRWYYVDG 99
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 135-153 1.13e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.00  E-value: 1.13e-08
                          10
                  ....*....|....*....
gi 893155375  135 GRNDTCLCGSGKKHKKCCG 153
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-154 1.95e-110

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 310.04  E-value: 1.95e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   1 MSELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893155375  81 IAETPGRHPDEAFVEFIARFTDADNAQITAMHERSRFLRIKEHWYYIDGIRPSLGRNDTCLCGSGKKHKKCCGR 154
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGRTAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-150 1.48e-71

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 211.63  E-value: 1.48e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   3 ELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTVIA 82
Cdd:COG3012    4 SPCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 893155375  83 ETPGRHPDEAFVEFIARFTDADNAQitAMHERSRFLRIKEHWYYIDG-IRPSLGRndtclcGSGKKHKK 150
Cdd:COG3012   84 TEAGPDDDEGTVEFVARYREGGRAG--RLHERSRFVREDGRWYYVDGeVAPKPGR------GSGKKFKK 144
PRK02250 PRK02250
hypothetical protein; Provisional
 4-153 3.82e-49

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 155.42  E-value: 3.82e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   4 LCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGfTKTVWHGLTVIAE 83
Cdd:PRK02250   3 SCPCGSTQTYSQCCEPIHLNHASAQTPEQLMRSRYSAHVLGLVDYVVETYHPSCNAEEQREGIAES-IHSDWLKLEVIKT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375  84 TPGRHPDEAFVEFIARFtDADNAQITaMHERSRFLRIKEHWYYIDGIRP-----------------SLGRNDTCLCGSGK 146
Cdd:PRK02250  82 EAGSTPNEGFVEFKAYF-DEEGKRYC-LEERSRFLKENGLWYYIDGTFPeeepeqdprlnqsvsslKQGRNDPCICGSGK 159


                 ....*..
gi 893155375 147 KHKKCCG 153
Cdd:PRK02250 160 KFKKCCG 166
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 33-129 1.33e-44

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 141.55  E-value: 1.33e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   33 LMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTVIAETPGRHPDEAFVEFIARFTDADnaQITAMH 112
Cdd:pfam17775   5 LMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGG--QLQTLH 82

                          90
                  ....*....|....*..
gi 893155375  113 ERSRFLRIKEHWYYIDG 129
Cdd:pfam17775  83 ERSRFVREDGRWYYVDG 99
PRK01752 PRK01752
YchJ family protein;
1-153 1.37e-37

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 125.67  E-value: 1.37e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   1 MSELCPCGSILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTV 80
Cdd:PRK01752   4 LLEACPCQSGKHYADCCGPFHLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTLLDPAALQTWAENTTWLGLEI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893155375  81 IA-ETPGRHpdEAFVEFIARFTDADNAQitAMHERSRFLRIKEHWYYIDGIRPSLGRNDTCLCGSGKKHKKCCG 153
Cdd:PRK01752  84 LAhESLTKI--HSAVEFKAIFQGEEGEQ--AHHERSLFVKIDNRWYFVDPTVPLPTMKQPCVCGSGKKFKHCCG 153
PRK00183 PRK00183
hypothetical protein; Provisional
 5-153 4.10e-36

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 122.22  E-value: 4.10e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   5 CPCGSILNYHECCGPYILGTQvAAKPAILMRSRYCAYVEKNVDYLIATWHPDCHAQEWRESIIQGFTKTVWHGLTV-IAE 83
Cdd:PRK00183   6 CPCGSGDLLDACCGRYHAGHP-APCAEALMRSRYSAYVLGLVDYLVATTLPAQQAGLDRAAIAAWSAQSTWLGLEVeSSE 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 893155375  84 TPGRHPDEAFVEFIARFTDADNAQitAMHERSRFLRIKEHWYYIDGIRP-SLGRNDTCLCGSGKKHKKCCG 153
Cdd:PRK00183  85 VLGGQPEHAFVTFTARWHDADGEH--SHRERSAFVQHQGRWYFIDPTVPlKAGRNDPCPCGSGQKFKKCCA 153
PRK04233 PRK04233
hypothetical protein; Provisional
 5-130 4.31e-28

hypothetical protein; Provisional


Pssm-ID: 235261  Cd Length: 129  Bit Score: 100.77  E-value: 4.31e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   5 CPCGSILNYHECCGPYILGtqvAAKP--AILMRSRYCAYVEKNVDYLIATWHPDCHAQEWreSIIQGfTKTVWHGLTViA 82
Cdd:PRK04233  10 CPCGRPADYARCCGPYHAG---AAAPdaETLMRARYSAYVRRDADYLLASWHPSTRPAEL--SLDEG-GRTTWLGLTV-Q 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 893155375  83 ETPGRHPDEAFVEFIARFTDADNAQITaMHERSRFLRIKEHWYYIDGI 130
Cdd:PRK04233  83 RTLETGADTAEVVFLARYRIGGGSAVR-MTEHSRFVREDGRWYYLDAR 129
PRK01842 PRK01842
hypothetical protein; Provisional
 3-129 6.21e-26

hypothetical protein; Provisional


Pssm-ID: 234985  Cd Length: 149  Bit Score: 96.03  E-value: 6.21e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375   3 ELCPCGS----------ILNYHECCGPYILGTQVAAKPAILMRSRYCAYVEKNVDYLIATWHPD-CHAQewRESIIQGFT 71
Cdd:PRK01842  12 DACPCGGaapgaaanarAPRYAACCGRFIDGGAAAPTALELMRSRYSAYVLGATDYLRATWDPStCPAD--LDADPAAAD 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 893155375  72 KTVWHGLTVIAETPgRHPDEAFVEFIARFTDADNAQitAMHERSRFLRiKEH--WYYIDG 129
Cdd:PRK01842  90 APRWLGLAIKRHAQ-LDATHAEVEFVARYKVGGRAH--RLHETSRFVR-DEQgrWRYVDG 145
PRK05590 PRK05590
hypothetical protein; Provisional
 135-154 5.10e-09

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 51.90  E-value: 5.10e-09
                         10        20
                 ....*....|....*....|
gi 893155375 135 GRNDTCLCGSGKKHKKCCGR 154
Cdd:PRK05590 146 GRNDPCPCGSGKKYKKCCGK 165
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 135-153 1.13e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.00  E-value: 1.13e-08
                          10
                  ....*....|....*....
gi 893155375  135 GRNDTCLCGSGKKHKKCCG 153
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 132-154 4.97e-08

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 50.80  E-value: 4.97e-08
                         10        20
                 ....*....|....*....|...
gi 893155375 132 PSLGRNDTCLCGSGKKHKKCCGR 154
Cdd:COG0653  852 PKVGRNDPCPCGSGKKYKHCHGK 874
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 132-154 5.13e-08

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 46.82  E-value: 5.13e-08
                         10        20
                 ....*....|....*....|...
gi 893155375 132 PSLGRNDTCLCGSGKKHKKCCGR 154
Cdd:COG3318   22 PKVGRNDPCPCGSGKKYKKCCGA 44
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 136-154 4.01e-06

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 41.31  E-value: 4.01e-06
                          10
                  ....*....|....*....
gi 893155375  136 RNDTCLCGSGKKHKKCCGR 154
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
PRK10396 PRK10396
hypothetical protein; Provisional
 135-152 1.69e-05

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 42.81  E-value: 1.69e-05
                         10
                 ....*....|....*...
gi 893155375 135 GRNDTCLCGSGKKHKKCC 152
Cdd:PRK10396 202 GRNDPCPCGSGKKFKQCC 219
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 138-154 2.15e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 40.07  E-value: 2.15e-04
                         10
                 ....*....|....*..
gi 893155375 138 DTCLCGSGKKHKKCCGR 154
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 1-19 8.48e-04

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 35.15  E-value: 8.48e-04
                          10
                  ....*....|....*....
gi 893155375    1 MSELCPCGSILNYHECCGP 19
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
PRK12318 PRK12318
methionyl aminopeptidase;
134-151 7.70e-03

methionyl aminopeptidase;


Pssm-ID: 183434 [Multi-domain]  Cd Length: 291  Bit Score: 35.57  E-value: 7.70e-03
                         10
                 ....*....|....*...
gi 893155375 134 LGRNDTCLCGSGKKHKKC 151
Cdd:PRK12318   1 MKRNDPCWCGSGKKWKHC 18
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 135-154 9.36e-03

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 34.43  E-value: 9.36e-03
                         10        20
                 ....*....|....*....|
gi 893155375 135 GRNDTCLCGSGKKHKKCCGR 154
Cdd:COG3012    1 PSNSPCPCGSGKPYADCCGP 20
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH