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Conserved domains on  [gi|906347142|gb|AKS28856|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Litoditis aff. marina PmII]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009558)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
8-291 2.55e-124

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177153  Cd Length: 284  Bit Score: 356.13  E-value: 2.55e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   8 MIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFVVMYL 87
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  88 EWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVFNFVA 167
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 168 KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSVMFFNFSIFFSFV 247
Cdd:MTH00090 161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 906347142 248 MFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLFY 291
Cdd:MTH00090 241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
8-291 2.55e-124

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 356.13  E-value: 2.55e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   8 MIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFVVMYL 87
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  88 EWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVFNFVA 167
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 168 KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSVMFFNFSIFFSFV 247
Cdd:MTH00090 161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 906347142 248 MFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLFY 291
Cdd:MTH00090 241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
NADHdh pfam00146
NADH dehydrogenase;
8-283 3.19e-63

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 201.16  E-value: 3.19e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142    8 MIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFVVMYL 87
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   88 EWFTIPY--FFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVFNF 165
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  166 VA--------KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSVM- 236
Cdd:pfam00146 161 SEiveaqaggWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLf 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 906347142  237 -----------FFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:pfam00146 241 lggwlgpfplpGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-283 1.44e-57

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 187.65  E-value: 1.44e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:COG1005    8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDF--LSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIH 159
Cdd:COG1005   88 FIPALLAFAVIPFGPGLvlADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 160 NNVFNF---VAK------FNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFS 230
Cdd:COG1005  168 AGSLNLseiVEAqagglwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 231 VLTSVMF------------------FNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:COG1005  248 ALATTLFlggwlgpfpilplgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNL 318
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
8-291 2.55e-124

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 356.13  E-value: 2.55e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   8 MIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFVVMYL 87
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  88 EWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVFNFVA 167
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 168 KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSVMFFNFSIFFSFV 247
Cdd:MTH00090 161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 906347142 248 MFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLFY 291
Cdd:MTH00090 241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
3-290 6.15e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 223.59  E-value: 6.15e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   3 IMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISF 82
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  83 VVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNV 162
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 163 FNF--VAKFNLSLVIIYIPFLIMVI------AELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTS 234
Cdd:MTH00143 161 FSFieISESQFSVWLGFLMFPVFLMwfvsclAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 906347142 235 VM----------FFNFSIFFSFVMFSIL-IFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLF 290
Cdd:MTH00143 241 VLffggssvlflLGGVVFMFKVLFFAFLfIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
2-289 3.42e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 216.56  E-value: 3.42e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNN 161
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 162 VFNFVA----KFNLSLVIIYIP----FLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLT 233
Cdd:MTH00193 161 SFNLLDfmnyQKYIWFIFFSFPlfliWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 906347142 234 SVM------FFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVL 289
Cdd:MTH00193 241 VLMflggdlLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGL 302
NADHdh pfam00146
NADH dehydrogenase;
8-283 3.19e-63

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 201.16  E-value: 3.19e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142    8 MIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFVVMYL 87
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   88 EWFTIPY--FFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVFNF 165
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  166 VA--------KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSVM- 236
Cdd:pfam00146 161 SEiveaqaggWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLf 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 906347142  237 -----------FFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:pfam00146 241 lggwlgpfplpGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANL 298
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
3-283 3.58e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 201.42  E-value: 3.58e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   3 IMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISF 82
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  83 VVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNV 162
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 163 FNF--------VAKFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTS 234
Cdd:MTH00225 161 YNLfdfsynqkYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 906347142 235 VMFFNFSIFFSFVMFSI--------LIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:MTH00225 241 ILFFGGFFVTIDLFLILkimllafwFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYL 297
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
2-291 6.37e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 200.74  E-value: 6.37e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNN 161
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 162 VFNFVAK--------FNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLT 233
Cdd:MTH00195 161 SFDFTIMvisqgfswVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 906347142 234 SVMFF---NFSIFFSFVMFSILIFI--RSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLFY 291
Cdd:MTH00195 241 TILFLgggGTIIVALKSLFLSFCFLwvRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPF 303
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
2-290 1.35e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 199.75  E-value: 1.35e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNN 161
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 162 VFN----FVAKFNLSLVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLT 233
Cdd:MTH00218 161 GFSlegfNLTQETIWLLIPEWPLALMwfisTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 906347142 234 SVMFFNFSIFFSFVMF------SILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLF 290
Cdd:MTH00218 241 VILFLGTSLTTINLMLkatllvFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLP 303
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
1-280 3.71e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 196.65  E-value: 3.71e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNF----VAKFNLSLVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVL 232
Cdd:MTH00111 163 GGYTLqtlaTTQEPLWLIFSSWPLAMMwyisTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 233 TSVMFFN-FSIFFSFVMFSIL------------IFIRSSYPRYRYDLMMSLFWFKLLPISL 280
Cdd:MTH00111 243 TTILFLNpSTLNLPPELFTINlmtktllltsgfLWIRASYPRFRYDQLMHLLWKQFLPLTL 303
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
1-280 4.07e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 188.68  E-value: 4.07e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:MTH00071   3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00071  83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNFVAkFNLS-----LVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSV 231
Cdd:MTH00071 163 GGFSLMN-FNTTqefmwLIIPAWPMAAMwfisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 906347142 232 LTSVMFFNFSIFFSF------------VMFSIL-IFIRSSYPRYRYDLMMSLFWFKLLPISL 280
Cdd:MTH00071 242 LSTILFLGSTYNHLQpelstmnlmikaSILSMLfLWVRASYPRFRYDQLMHLVWKNFLPITL 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-283 1.44e-57

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 187.65  E-value: 1.44e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:COG1005    8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDF--LSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIH 159
Cdd:COG1005   88 FIPALLAFAVIPFGPGLvlADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 160 NNVFNF---VAK------FNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFS 230
Cdd:COG1005  168 AGSLNLseiVEAqagglwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 231 VLTSVMF------------------FNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:COG1005  248 ALATTLFlggwlgpfpilplgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNL 318
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-280 1.77e-56

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 184.42  E-value: 1.77e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:MTH00134   4 TLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPML 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00134  84 ALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFT 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNF----VAKFNLSLVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVL 232
Cdd:MTH00134 164 GGFTLqtfnTAQESIWLLLPAWPLAAMwyisTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTL 243
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 233 TSVMFFNFSIFFSF------------VMFSIL-IFIRSSYPRYRYDLMMSLFWFKLLPISL 280
Cdd:MTH00134 244 SAILFLGASHIPTLpelttinlmtkaALLSVVfLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
4-283 5.19e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 180.59  E-value: 5.19e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   4 MSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISFV 83
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  84 VMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHNNVF 163
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 164 NF----VAKFNLSLVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLTSV 235
Cdd:MTH00104 161 TLstliTTQEHLWLIFPSWPLAMMwfisTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 236 -------------MFFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:MTH00104 241 lflgafhnpympeLYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALC 301
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-289 4.60e-53

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 175.77  E-value: 4.60e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYF--FDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIII 158
Cdd:PRK06076  88 AFIPAFLAWAVIPFGpeLVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 159 HNNVFNFVA--------KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFS 230
Cdd:PRK06076 168 LAGSLNLSDiveaqflsWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 906347142 231 VLTSVMF----------------FNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVL 289
Cdd:PRK06076 248 ALITTLFlggwlppfplgggipgAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTAAV 322
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
1-289 2.62e-51

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 171.31  E-value: 2.62e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:MTH00040   2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00040  82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNFVAKFNLS----LVIIYIPFLIM----VIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVL 232
Cdd:MTH00040 162 GSFSLSSISNSQngswLLFPCLPLFYIwfisTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 906347142 233 TSVMF--------------FNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVL 289
Cdd:MTH00040 242 SVILFlgggspfneifpinIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLL 312
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
2-291 1.67e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 164.14  E-value: 1.67e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:MTH00216   5 IIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDFL--SFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIH 159
Cdd:MTH00216  85 FTLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLC 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 160 NNVFNFVA---------KFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFS 230
Cdd:MTH00216 165 VGSLSITEivlaqnngiWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMS 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 906347142 231 VLTSVMFF------------NFSIFFSFVMFSILIFI--RSSYPRYRYDLMMSLFWFKLLPISLIFLGYFAVLFY 291
Cdd:MTH00216 245 CLTTILFLggwlspikyfkgGAGWFGLKVVFIIFLFIwvRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLF 319
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
1-283 2.30e-48

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 163.41  E-value: 2.30e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGI 80
Cdd:MTH00010   1 MNISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  81 SFVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00010  81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNFVAKFN-------LSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLT 233
Cdd:MTH00010 161 QTFSFSKIIMsqyswilLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFT 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 234 SV---------MFFNFSIFFSFVMFSIL-IFIRSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:MTH00010 241 SVfftsfipsiFISDLMLILKTVFLAFLfIWIRATFPRMRYDRLMNLTWKSFLPMSLTSL 300
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
2-284 1.75e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 158.74  E-value: 1.75e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPY--FFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIH 159
Cdd:MTH00054  81 LTLAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 160 NNVFNFVAK--------FNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSV 231
Cdd:MTH00054 161 VGSLNLTEIvlaqkniwFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 906347142 232 LTSVM--------FFNFSIFFSFVMFSI--------LIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLG 284
Cdd:MTH00054 241 FGVILflggwlviSGPTSYFSNFVWFGIkialiiflFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVV 309
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
3-280 4.46e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 147.86  E-value: 4.46e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   3 IMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGISF 82
Cdd:MTH00029   7 ITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISF 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  83 VVMYLEW--FTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIHN 160
Cdd:MTH00029  87 TLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCV 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 161 NVFNF----VAKFNLSLVIIYIP----FLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVL 232
Cdd:MTH00029 167 GSLNIseivISQRSVWLIIPLFPaaimFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCM 246
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 906347142 233 TSVMFF-----------------------------NFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISL 280
Cdd:MTH00029 247 MTIFFLggwlspldgiptppeafsifeqiasskssFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
1-283 1.10e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 118.87  E-value: 1.10e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   1 MLIMSLLMIILMMIFIvqsiAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNS-SKISFLLVPG 79
Cdd:MTH00058   3 GLVSGLEGLLIILLLV----AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSrSWFSLFGVFL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  80 ISFVVMYLEwFTIPYFFDFLSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIII- 158
Cdd:MTH00058  79 LVLLVVFYC-FIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLc 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 159 ---HNNVFNFVAKFNLSLV--IIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFFSVLT 233
Cdd:MTH00058 158 ygsYSLVDFYYSGWLSVLLfpLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 906347142 234 SVMFFNFSIFFSFVMFSILIFI--RSSYPRYRYDLMMSLFWFKLLPISLIFL 283
Cdd:MTH00058 238 SVLFFGGGFVSIMLLFHLLFFMwaRATLPRVRYDYFVNFFWEYCLVLLILSL 289
ndhA CHL00032
NADH dehydrogenase subunit 1
2-280 4.99e-22

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 94.25  E-value: 4.99e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   2 LIMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSKISFLLVPGIS 81
Cdd:CHL00032  26 LIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIA 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  82 FVVMYLEWFTIPYFFDFLSFEYSVLFFLCLIGFSVYTT--LVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAIIIH 159
Cdd:CHL00032 106 VISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIglLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 160 NNVFNFV------AKF-----NL-SLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSL- 226
Cdd:CHL00032 186 SNSLSTVdiveaqSKYgfwgwNLwRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLl 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 227 --------------------IFFS----------VLTSVMFFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLL 276
Cdd:CHL00032 266 vsslfvtvlylggwnlsipyIFIPelfeinktggVFGTTIGIFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLL 345

                 ....
gi 906347142 277 PISL 280
Cdd:CHL00032 346 PISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-286 6.16e-15

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 73.29  E-value: 6.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142   3 IMSLLMIILMMIFIVQSIAFITLYERHLLSSSQNRLGPtkvtfmGLAQALLDGVKLLKKEQMTPLNSSKIsFLLVPGISF 82
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142  83 VVMYLEWFTIPYFFDF--LSFEYSVLFFLCLIGFSVYTTLVSGIVSKSKYGMIGAIRASSQSISYEIAFSLYILAI---- 156
Cdd:COG0650   74 AAMLLAALLVPVLTTGppLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALalla 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 906347142 157 -------IIHNNVFNFVAKFNLSLVIIYIPFLIMVIAELNRAPFDFSEGESELVSGFNVEFASVAFVLLFLSEYGSLIFF 229
Cdd:COG0650  154 gstslsdIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 906347142 230 SVL------------TSVMFFNFSIFFSFVMFSILIFIRSSYPRYRYDLMMSLFWFKLLPISLIFLGYF 286
Cdd:COG0650  234 LSLfvnlflpwgialTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAV 302
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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