NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|910356018|ref|YP_009161898|]
View 

NADH dehydrogenase subunit 6 (mitochondrion) [Stylodipus telum]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009569)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-174 6.96e-60

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214421  Cd Length: 175  Bit Score: 183.85  E-value: 6.96e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWVILGSEYGGYMGEDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|....
gi 910356018 161 FVSIFIVIDIVRGG 174
Cdd:MTH00109 162 FIGVFVIIEITRGN 175
 
Name Accession Description Interval E-value
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-174 6.96e-60

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 183.85  E-value: 6.96e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWVILGSEYGGYMGEDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|....
gi 910356018 161 FVSIFIVIDIVRGG 174
Cdd:MTH00109 162 FIGVFVIIEITRGN 175
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
47-168 1.36e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 42.88  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   47 GGSYLGLMVFLIYLGGMMVVFGYTTAM-AAEDYPETWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWV 125
Cdd:pfam00499  31 GAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLLVLLSASLTPAAAAAAPDVGNIE 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 910356018  126 ILGseyggymgedmvgvSAIYDYGWWLVVLAGWSLFVSIFIVI 168
Cdd:pfam00499 111 AIG--------------ELLFTDYLLPFELASVLLLVALVGAI 139
 
Name Accession Description Interval E-value
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-174 6.96e-60

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 183.85  E-value: 6.96e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWVILGSEYGGYMGEDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|....
gi 910356018 161 FVSIFIVIDIVRGG 174
Cdd:MTH00109 162 FIGVFVIIEITRGN 175
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 9.30e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 94.05  E-value: 9.30e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFELVGSV-WLASYGDAKVVVglDDMGDWVILgseyggymGEDMVGVSAIYDYGWWLVVLAGWS 159
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLfWGGWYEGSWVVV--DELKEFSVL--------RGDVGGVALMYSSGGGMLVICAWV 150

                        170
                 ....*....|....
gi 910356018 160 LFVSIFIVIDIVRG 173
Cdd:MTH00138 151 LLLTLFVVLELTRG 164
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 4.82e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 87.21  E-value: 4.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFsfeLVGSVWLasygdakVVVGLDDMGDWVILGSEYGGYMGEDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00065  81 AWGSWSVLVYVLFYLL---LLIVGYI-------LFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVL 150

                        170
                 ....*....|...
gi 910356018 161 FVSIFIVIDIVRG 173
Cdd:MTH00065 151 LLTLFVVLEVTRG 163
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.49e-18

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 77.87  E-value: 1.49e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWVILGSeyggymgeDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRL--------DFSGVSLFYSSGGGGLLVCGWGL 152

                        170
                 ....*....|...
gi 910356018 161 FVSIFIVIDIVRG 173
Cdd:MTH00115 153 LLTLFVVLELVRG 165
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-174 1.70e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 64.62  E-value: 1.70e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATKPSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFSFelvgsvwlasygdakVVVGLDDMGDWVILGSEYGGYMGE-DMVGVSAIYDYGWWLVVLAGWS 159
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGL---------------GFVGFYFYGGWEMLSWMGVDEANNlDLSGVSDLYSRGFFLLLLGGVV 145

                        170
                 ....*....|....*
gi 910356018 160 LFVSIFIVIDIVRGG 174
Cdd:MTH00214 146 LFLVLFVVLELVRGL 160
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-173 1.21e-10

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 56.84  E-value: 1.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   1 MTMSIFLLSLLFVACFIAFATkpSPIYGGLGLIVGGGLGCGLILEHGGSYLGLMVFLIYLGGMMVVFGYTTAMAAEDYPE 80
Cdd:MTH00045   1 MVFYLFLILMLFGSTLVFYSL--SPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018  81 TWASNWMVSLMLVFGFsfelvgsvWlasygdakVVVGLDDMGDWVILGSEYGGymGEDMVGVSAIYDYGWWLVVLAGWSL 160
Cdd:MTH00045  79 VSNLGEVLVLSLLLSL--------W--------VFISFDNFLELSNNNWSLVS--LSDLVGSSELYNSGGLYLLLGGFIL 140

                        170
                 ....*....|...
gi 910356018 161 FVSIFIVIDIVRG 173
Cdd:MTH00045 141 LVALVVALVISFG 153
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
47-168 1.36e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 42.88  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910356018   47 GGSYLGLMVFLIYLGGMMVVFGYTTAM-AAEDYPETWASNWMVSLMLVFGFSFELVGSVWLASYGDAKVVVGLDDMGDWV 125
Cdd:pfam00499  31 GAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLALLLLVLLSASLTPAAAAAAPDVGNIE 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 910356018  126 ILGseyggymgedmvgvSAIYDYGWWLVVLAGWSLFVSIFIVI 168
Cdd:pfam00499 111 AIG--------------ELLFTDYLLPFELASVLLLVALVGAI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH