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Conserved domains on  [gi|922668152|gb|ALA65615|]
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cytochrome oxidase subunit I, partial (mitochondrion) [Eleutherozoa sp. COT033_L24]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-211 3.69e-139

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member MTH00153:

Pssm-ID: 469701  Cd Length: 511  Bit Score: 398.47  E-value: 3.69e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00153  75 GFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGIS 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00153 155 SILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFW 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00153 235 FFGHPEVYILILPGFGMISHIISQESGKKETFGTLGMIYAMLAIGLLGFIV 285
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-211 3.69e-139

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 398.47  E-value: 3.69e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00153  75 GFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGIS 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00153 155 SILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFW 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00153 235 FFGHPEVYILILPGFGMISHIISQESGKKETFGTLGMIYAMLAIGLLGFIV 285
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-211 7.20e-136

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 389.53  E-value: 7.20e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:cd01663   68 GFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGIS 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:cd01663  148 SILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFW 227

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:cd01663  228 FFGHPEVYILILPGFGIISHIISTFSGKKPVFGYLGMVYAMLSIGILGFIV 278
CtaD_CoxA TIGR02891
cytochrome c oxidase, subunit I; This large family represents subunit I's (CtaD, CoxA, CaaA) ...
 1-211 1.30e-86

cytochrome c oxidase, subunit I; This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport]


Pssm-ID: 213748  Cd Length: 499  Bit Score: 264.09  E-value: 1.30e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152    1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:TIGR02891  70 GFGNYLLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTGGAPDTGWTMYPPLSSTSGSPGVGVDLWLLGLHLLGIS 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:TIGR02891 150 SILGAVNFIVTILNMRAPGMTLMRMPLFVWGILVTSILILLAFPVLIAALILLLLDRLFGTHFFDPARGGDPLLWQHLFW 229

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 922668152  161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:TIGR02891 230 FFGHPEVYIIFLPAFGIISEILPTFARK-PIFGYRAMVYATVAIGFLSFGV 279
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-211 1.29e-85

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 262.76  E-value: 1.29e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:COG0843   79 GFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVG 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:COG0843  159 SILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLLWQHLFW 238

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:COG0843  239 FFGHPEVYILILPAFGIVSEIIPTFSRK-PLFGYKAMVLATVAIAFLSFLV 288
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-211 1.13e-52

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 174.68  E-value: 1.13e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152    1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGvesGAGTGWTIYPPLssglahagGSVDLAIFSLHLAGAS 80
Cdd:pfam00115  63 GFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLLLASFG---GATTGWTEYPPL--------VGVDLWYIGLLLAGVS 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   81 SILASINFITTVINMRTPGISFdRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNttffdpAGGGDPILFQHLFW 160
Cdd:pfam00115 132 SLLGAINFIVTILKRRAPGMTL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLG------AGGGDPLLDQHLFW 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 922668152  161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:pfam00115 205 WFGHPEVYILILPAFGIIYYILPKFAGR-PLFGYKLSVLAFWLIAFLGFLV 254
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-211 3.69e-139

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 398.47  E-value: 3.69e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00153  75 GFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGIS 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00153 155 SILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFW 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00153 235 FFGHPEVYILILPGFGMISHIISQESGKKETFGTLGMIYAMLAIGLLGFIV 285
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-211 7.20e-136

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 389.53  E-value: 7.20e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:cd01663   68 GFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGIS 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:cd01663  148 SILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFW 227

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:cd01663  228 FFGHPEVYILILPGFGIISHIISTFSGKKPVFGYLGMVYAMLSIGILGFIV 278
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-211 2.15e-129

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 374.17  E-value: 2.15e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00037  77 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLLASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGAS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00037 157 SILASINFITTIINMRTPGMTFDRLPLFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPILFQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00037 237 FFGHPEVYILILPGFGMISHVIAHYSGKQEPFGYLGMVYAMIAIGILGFLV 287
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-211 4.37e-128

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 370.55  E-value: 4.37e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00167  77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00167 157 SILGSINFITTIINMKPPGITQYQTPLFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPILYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00167 237 FFGHPEVYILILPGFGMISHIVVYYSGKKEPFGYMGMVWAMMAIGLLGFIV 287
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-211 5.84e-128

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 370.19  E-value: 5.84e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00116  77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00116 157 SILGAINFITTCINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00116 237 FFGHPEVYILILPGFGIISHIVTYYAGKKEPFGYMGMVWAMLSIGFLGFIV 287
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-211 3.69e-126

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 365.45  E-value: 3.69e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00223  74 GFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVS 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00223 154 SILGAINFITTIINMRSPGMQLERLPLFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFW 233

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00223 234 FFGHPEVYILILPGFGMISHIVSHYSSKKEVFGTLGMIYAMLSIGVLGFIV 284
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-211 6.16e-125

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 362.50  E-value: 6.16e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00142  75 GFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVS 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00142 155 SILGAINFITTVINMRAGGMKFERVPLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFW 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00142 235 FFGHPEVYILILPGFGMISHIINHYSGKKEVFGTLGMIYAMLSIGLLGFIV 285
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-211 4.00e-112

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 329.96  E-value: 4.00e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00183  77 GFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00183 157 SILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00183 237 FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIV 287
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-211 5.27e-111

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 327.28  E-value: 5.27e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00077  77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00077 157 SILGAINFITTSINMKPPSMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00077 237 FFGHPEVYILILPGFGMISHIVTYYSAKKEPFGYMGMVWAMMSIGLLGFIV 287
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-211 1.68e-110

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 325.68  E-value: 1.68e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00103  77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00103 157 SILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00103 237 FFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIV 287
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-211 9.10e-110

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 323.78  E-value: 9.10e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00007  74 GFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVS 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00007 154 SILGAINFITTVINMRWKGLRLERIPLFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFW 233

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00007 234 FFGHPEVYILILPGFGAISHIVTHYAGKLEPFGTLGMIYAMLGIGVLGFIV 284
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-211 3.52e-107

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 317.53  E-value: 3.52e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00182  79 GFGNWLVPLYIGAPDMAFPRLNNISFWLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVS 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00182 159 SILGAINFITTIFNMRAPGVTFNRLPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILFQHLFW 238

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00182 239 FFGHPEVYILILPGFGMISQIIPTFVAKKQIFGYLGMVYAMLSIGILGFIV 289
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-211 2.12e-105

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 312.92  E-value: 2.12e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00184  79 GFGNWFVPLYIGAPDMAFPRLNNISFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGIS 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00184 159 SILGAMNFITTIFNMRAPGITMDRMPLFVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFW 238

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00184 239 FFGHPEVYILILPGFGIISQIIPTFAAKKQIFGYLGMVYAMVSIGILGFIV 289
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-211 1.92e-98

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 294.67  E-value: 1.92e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSgLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00079  78 GFGNWMLPLMLGAPDMSFPRLNNLSFWLLPTSLFLILDSCFVDMGPGTSWTVYPPLST-LGHPGSSVDLAIFSLHCAGIS 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00079 157 SILGGINFMVTTKNLRSSSISLEHMSLFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLLYQHLFW 236

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00079 237 FFGHPEVYILILPAFGIISQSTLYLTGKKEVFGSLGMVYAILSIGLIGCVV 287
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-211 7.41e-93

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 281.13  E-value: 7.41e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00026  78 GFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLS 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00026 158 SILGAMNFITTVMNMRTPGMTMSRIPLFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFW 237

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00026 238 FFGHPEVYILILPGFGIISQILSLFSYKKQIFGYLGMVYAMLAIGVLGFIV 288
CtaD_CoxA TIGR02891
cytochrome c oxidase, subunit I; This large family represents subunit I's (CtaD, CoxA, CaaA) ...
 1-211 1.30e-86

cytochrome c oxidase, subunit I; This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport]


Pssm-ID: 213748  Cd Length: 499  Bit Score: 264.09  E-value: 1.30e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152    1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:TIGR02891  70 GFGNYLLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTGGAPDTGWTMYPPLSSTSGSPGVGVDLWLLGLHLLGIS 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:TIGR02891 150 SILGAVNFIVTILNMRAPGMTLMRMPLFVWGILVTSILILLAFPVLIAALILLLLDRLFGTHFFDPARGGDPLLWQHLFW 229

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 922668152  161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:TIGR02891 230 FFGHPEVYIIFLPAFGIISEILPTFARK-PIFGYRAMVYATVAIGFLSFGV 279
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-211 1.29e-85

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 262.76  E-value: 1.29e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:COG0843   79 GFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVG 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:COG0843  159 SILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLLWQHLFW 238

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:COG0843  239 FFGHPEVYILILPAFGIVSEIIPTFSRK-PLFGYKAMVLATVAIAFLSFLV 288
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-211 1.39e-85

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 260.54  E-value: 1.39e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:cd00919   65 GGFGNLLPPLIGARDLAFPRLNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVS 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:cd00919  145 SILGAINFITTILNMRAPGMTLDKMPLFVWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVLYQHLFW 224

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:cd00919  225 FFGHPEVYILILPAFGAISEIIPTFSGK-PLFGYKLMVYAFLAIGFLSFLV 274
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 1-211 3.86e-73

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 229.95  E-value: 3.86e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASagVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:MTH00048  78 GFGNYLLPLLLGLSDLNLPRLNALSAWLLVPSIVFLLLS--MCLGAGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVS 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFdRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:MTH00048 156 SLFGSINFICTIYSAFMTNVFS-RTSIILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVLFQHMFW 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:MTH00048 235 FFGHPEVYVLILPGFGIISHICLSLSNNDDPFGYYGLVFAMFSIVCLGSVV 285
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 1-211 5.41e-71

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 224.00  E-value: 5.41e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:cd01662   71 GLMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIG 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:cd01662  151 TLLGAINFIVTILKMRAPGMTLMRMPIFTWTTLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNPMLWQHLFW 230

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:cd01662  231 IFGHPEVYILILPAFGIFSEIVPTFSRK-PLFGYRSMVYATVAIGFLSFGV 280
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-211 1.13e-52

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 174.68  E-value: 1.13e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152    1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGvesGAGTGWTIYPPLssglahagGSVDLAIFSLHLAGAS 80
Cdd:pfam00115  63 GFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLLLASFG---GATTGWTEYPPL--------VGVDLWYIGLLLAGVS 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   81 SILASINFITTVINMRTPGISFdRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNttffdpAGGGDPILFQHLFW 160
Cdd:pfam00115 132 SLLGAINFIVTILKRRAPGMTL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLG------AGGGDPLLDQHLFW 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 922668152  161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:pfam00115 205 WFGHPEVYILILPAFGIIYYILPKFAGR-PLFGYKLSVLAFWLIAFLGFLV 254
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 1-211 1.02e-43

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 154.71  E-value: 1.02e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:PRK15017 121 GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIG 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152  81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:PRK15017 201 TTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIW 280

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922668152 161 FFGHPEVYILILPGFGMISHVIAHYSgKSEPFGYLGMVYAIVSIGILGFLV 211
Cdd:PRK15017 281 AWGHPEVYILILPVFGVFSEIAATFS-RKRLFGYTSLVWATVCITVLSFIV 330
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 1-211 8.83e-42

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 149.23  E-value: 8.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152    1 GFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLVASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGAS 80
Cdd:TIGR02882 114 GLMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFNISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIG 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922668152   81 SILASINFITTVINMRTPGISFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNVNTTFFDPAGGGDPILFQHLFW 160
Cdd:TIGR02882 194 TLMTGINFFVTILKMRAPGMKLMQMPMFTWTTLITTLIIIFAFPVLTVALALMTTDRIFDTAFFTVAHGGMPMLWANLFW 273

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 922668152  161 FFGHPEVYILILPGFGMISHVIAHYSGKsEPFGYLGMVYAIVSIGILGFLV 211
Cdd:TIGR02882 274 IWGHPEVYIVILPAFGIYSEIISTFAQK-RLFGYKSMVWSTVGIAFLSFLV 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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