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Conserved domains on  [gi|930588807|dbj|BAS53434|]
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ribosomal protein S4 [Diphyscium malayense]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 4.06e-135

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 376.48  E-value: 4.06e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLGALPGLTSKTPQLKSSSINQSaSNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS-RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  81 GQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYK 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 930588807 161 IPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 4.06e-135

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 376.48  E-value: 4.06e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLGALPGLTSKTPQLKSSSINQSaSNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS-RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  81 GQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYK 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 930588807 161 IPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 8.67e-83

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 244.21  E-value: 8.67e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLG-ALPGLTSKtpqlkSSSINQS--------ASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVR 71
Cdd:COG0522    1 MARYTGPKCKLCRREGvKLFLKGER-----KCALERRpyppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  72 IARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVK 151
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 930588807 152 NMDFSQKYKIPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 2.52e-74

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 222.56  E-value: 2.52e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807    3 RYRGPRLRIIRRLGALPGLTSKTPQLKSSSI--NQSASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGST 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLLKRKYPpgQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   81 GQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYK 160
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 930588807  161 IPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-89 1.74e-20

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 81.82  E-value: 1.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807    3 RYRGPRLRIIRRLGALPGLTSKTPQLKSSSIN---------QSASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIA 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 930588807   74 RKAKGSTGQVLLQLLE 89
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 90-155 1.02e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 76.52  E-value: 1.02e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930588807  90 MRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDF 155
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKL 66
S4 smart00363
S4 RNA-binding domain;
90-145 1.64e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 59.91  E-value: 1.64e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 930588807    90 MRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 4.06e-135

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 376.48  E-value: 4.06e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLGALPGLTSKTPQLKSSSINQSaSNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS-RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  81 GQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYK 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 930588807 161 IPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-200 6.11e-85

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 249.64  E-value: 6.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLG-ALPG-----LTSKTP--QLksssiNQSASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRI 72
Cdd:PRK05327   1 MARYTGPKCKLSRRLGvDLFKsgkrcLKRKYPpgQH-----GQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  73 ARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKN 152
Cdd:PRK05327  76 AARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEA 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 930588807 153 MDFSQKYKIPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:PRK05327 156 LELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 8.67e-83

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 244.21  E-value: 8.67e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   1 MSRYRGPRLRIIRRLG-ALPGLTSKtpqlkSSSINQS--------ASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVR 71
Cdd:COG0522    1 MARYTGPKCKLCRREGvKLFLKGER-----KCALERRpyppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807  72 IARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVK 151
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 930588807 152 NMDFSQKYKIPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 2.52e-74

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 222.56  E-value: 2.52e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807    3 RYRGPRLRIIRRLGALPGLTSKTPQLKSSSI--NQSASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGST 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLLKRKYPpgQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807   81 GQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYK 160
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 930588807  161 IPNHLTLDSLEQKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-89 1.74e-20

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 81.82  E-value: 1.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930588807    3 RYRGPRLRIIRRLGALPGLTSKTPQLKSSSIN---------QSASNKKISQYRIRLEEKQKLRFHYGITERQLLKYVRIA 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 930588807   74 RKAKGSTGQVLLQLLE 89
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 90-155 1.02e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 76.52  E-value: 1.02e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 930588807  90 MRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDF 155
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKL 66
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 90-137 6.13e-14

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 63.28  E-value: 6.13e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 930588807   90 MRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFI 137
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
90-145 1.64e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 59.91  E-value: 1.64e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 930588807    90 MRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 86-129 4.91e-11

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 58.73  E-value: 4.91e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 930588807  86 QLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 129
Cdd:PRK04051  99 DILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 88-129 5.57e-10

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 55.89  E-value: 5.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 930588807   88 LEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 129
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 86-137 1.42e-09

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 55.14  E-value: 1.42e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 930588807  86 QLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY--RCKPQDFI 137
Cdd:PLN00189 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFmvRVDSQKHI 158
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 87-129 2.12e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 48.92  E-value: 2.12e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 930588807  87 LLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 129
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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