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Conserved domains on  [gi|937518090|gb|ALI38576|]
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ATP synthase F0F1 subunit epsilon [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 8.82e-70

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 206.15  E-value: 8.82e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   2 AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 81
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937518090  82 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 136
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 8.82e-70

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 206.15  E-value: 8.82e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   2 AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 81
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937518090  82 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 136
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 4-133 1.77e-60

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 182.45  E-value: 1.77e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090    4 TYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADT 83
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 937518090   84 AIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIE 133
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-133 3.04e-56

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 171.53  E-value: 3.04e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAI 85
Cdd:COG0355    2 KLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 937518090  86 RGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIE 133
Cdd:COG0355   82 RAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-127 1.44e-44

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 141.88  E-value: 1.44e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAI 85
Cdd:cd12152    2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 937518090  86 RGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIA 127
Cdd:cd12152   82 RPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-84 1.76e-38

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 124.86  E-value: 1.76e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937518090    6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTA 84
Cdd:pfam02823   2 KLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 8.82e-70

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 206.15  E-value: 8.82e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   2 AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 81
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937518090  82 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 136
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 4-133 1.77e-60

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 182.45  E-value: 1.77e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090    4 TYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADT 83
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 937518090   84 AIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIE 133
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-133 3.04e-56

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 171.53  E-value: 3.04e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAI 85
Cdd:COG0355    2 KLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 937518090  86 RGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIE 133
Cdd:COG0355   82 RAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-127 1.44e-44

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 141.88  E-value: 1.44e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAI 85
Cdd:cd12152    2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 937518090  86 RGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIA 127
Cdd:cd12152   82 RPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-84 1.76e-38

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 124.86  E-value: 1.76e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937518090    6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTA 84
Cdd:pfam02823   2 KLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-131 3.32e-34

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 115.82  E-value: 3.32e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRiVKQHGHEEFIYLSGGILEVQPGNVTVL 80
Cdd:PRK13446   1 MAKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELT-YKKGGKTHYVAVNGGFAEVSNNKVTVL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 937518090  81 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
Cdd:PRK13446  80 AETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQV 130
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 3-136 1.06e-30

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 107.39  E-value: 1.06e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   3 MTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKqHGHEEFIYLSGGILEVQPGNVTVLAD 82
Cdd:PRK14735   1 MPIHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVK-NGVRTPFAISGGFMEVLPHRVTILAD 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937518090  83 TAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK 136
Cdd:PRK14735  80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVAQLHK 133
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 2-134 2.61e-29

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 103.30  E-value: 2.61e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   2 AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 81
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILC 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 937518090  82 DTAIRGQDLDEARAMEAKRKAEEHISSSHGdVDYAQASAELAKAIAQLRVIEL 134
Cdd:PRK13450  81 DASEWPEEIDIKRAENAKKRAEERLRKKDE-IDVKRAELALFRAIARIKLKEL 132
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-129 4.23e-24

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 90.22  E-value: 4.23e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAmTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLsGGILEVQPGNVTVL 80
Cdd:PRK13448   1 MA-TFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVL-GGLAEVSEKGLTVL 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 937518090  81 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDvdyaqasaELAKAIAQL 129
Cdd:PRK13448  79 ADVATSVADLDLAQFAATIAEMEAQLAGKVGD--------ELDRAIERL 119
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 1-130 3.34e-20

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 80.22  E-value: 3.34e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAmTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVL 80
Cdd:PRK14736   1 MA-TFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937518090  81 ADTAIRGQDL------DEARAMEAKRKAEEHIssshgdvdyaQASAELAKAIAQLR 130
Cdd:PRK14736  80 AERAAPVEELtpemidREIEAVEMERDATQDL----------DKREALNAQIVQMQ 125
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 7-136 8.03e-18

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 74.40  E-value: 8.03e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   7 LDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHgHEEFIYLSGGILEVQPGNVTVLADTAIR 86
Cdd:PRK13452   8 VDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQ-HTDVLYVSGGIVEVTPTRVTIMVDDMER 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 937518090  87 GQDLDEARAMEAKRKAEEHISSSHGD-VDYAQASAELAKAIAQLRVIELTK 136
Cdd:PRK13452  87 AENLNQAEAEKARARAKEVLKNPDASkLDIEAANKRLKEADARLKALNSSN 137
atpC PRK13449
ATP synthase F1 subunit epsilon;
2-84 1.86e-16

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 69.42  E-value: 1.86e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   2 AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQ-HGHEEFIYLSGGILEVQPGNVTVL 80
Cdd:PRK13449   1 MAKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSdGAAPEVFHVQGGFAEVNEKGLTIL 80


                 ....
gi 937518090  81 ADTA 84
Cdd:PRK13449  81 AEHA 84
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-84 1.35e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 66.97  E-value: 1.35e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVL 80
Cdd:PRK13442   2 AGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTVL 81


                 ....
gi 937518090  81 ADTA 84
Cdd:PRK13442  82 AERA 85
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-116 2.59e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 67.64  E-value: 2.59e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIyLSGGILEVQPGNVTVL 80
Cdd:PRK13443   1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYA-VTGGFAEINATSISVL 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 937518090  81 ADTAI-----RGQDLDE--ARAMEAKRKAEEhiSSSHGDVDYA 116
Cdd:PRK13443  80 AEKAIpveelTGAVLDEfiAEARELASVALP--ENEPGDVDDA 120
atpE CHL00063
ATP synthase CF1 epsilon subunit
 3-137 8.26e-15

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 66.04  E-value: 8.26e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   3 MTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIvKQHGHEEFIYLSGGILEVQPGNVTVLAD 82
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRI-RLNDQWLTMALMGGFARIGNNEITILVN 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937518090  83 TAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKK 137
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAISS 134
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-103 2.50e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 59.51  E-value: 2.50e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQhGHEEFIYLSGGILEVQPGNVTVL 80
Cdd:PRK13444   2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKG-EKLKRISVEGGFCEVKDNQISIL 80

                         90       100
                 ....*....|....*....|...
gi 937518090  81 ADTAIRGQDLDEARAMEAKRKAE 103
Cdd:PRK13444  81 TDHGALKEDIDHEHEKKLLAEAE 103
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 88-131 2.73e-12

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 57.39  E-value: 2.73e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 937518090   88 QDLDEARAMEAKRKAEEHISSSHGD-VDYAQASAELAKAIAQLRV 131
Cdd:pfam00401   1 EDIDVARAEEAKERAEERLAQAKQDdIDYARAQAALARALARLQA 45
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 31-102 5.47e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 48.47  E-value: 5.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090  31 GELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGN-VTVLADTAIRGQDLDE---------ARAMEAKR 100
Cdd:PRK13447  28 GGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGArVEIACREAVLGEDLARleavvravrAAQLDAAR 107


                 ..
gi 937518090 101 KA 102
Cdd:PRK13447 108 RA 109
alt_F1F0_F1_eps TIGR03166
alternate F1F0 ATPase, F1 subunit epsilon; A small number of taxonomically diverse prokaryotic ...
 21-102 2.22e-07

alternate F1F0 ATPase, F1 subunit epsilon; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.


Pssm-ID: 132210 [Multi-domain]  Cd Length: 122  Bit Score: 46.58  E-value: 2.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAM---- 96
Cdd:TIGR03166  17 VTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVEVSVRNAVGGTELEELEEAvrqe 96

                          90
                  ....*....|.
gi 937518090   97 -----EAKRKA 102
Cdd:TIGR03166  97 fltldEQERSA 107
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-110 5.23e-07

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 45.25  E-value: 5.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   1 MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHE-EFIYL-SGGILEVQPGNVT 78
Cdd:PRK01474   1 MNETILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKsENTYLiSGGVTEVTGNYIN 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 937518090  79 VLADTAIRGQDLDEARAMEAKRKAEEHISSSH 110
Cdd:PRK01474  81 IATETAINVTNLSEAEIATKLLDLQKTLSDQH 112
PRK06228 PRK06228
F0F1 ATP synthase subunit epsilon; Validated
 21-95 7.58e-07

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 235750 [Multi-domain]  Cd Length: 131  Bit Score: 45.31  E-value: 7.58e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937518090  21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILeVQPG-NVTVLADTAIRGQDLDEARA 95
Cdd:PRK06228  20 VTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGIL-VKTGpDVLVSVRNAIGGTDLGELRE 94
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 7-103 2.11e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 43.62  E-value: 2.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937518090   7 LDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIyLSGGILEVQPGNVTVLADTAIR 86
Cdd:PRK13451   3 VKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYK-VADGFLHCDGKNVIIITEEAGR 81

                         90
                 ....*....|....*..
gi 937518090  87 GQDLDEARAMEAKRKAE 103
Cdd:PRK13451  82 EEEISPHRYLGARERVE 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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