retrotransposon-derived protein PEG10 isoform 2 [Homo sapiens]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Retrotrans_gag | pfam03732 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
119-212 | 9.83e-16 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. : Pssm-ID: 367628 Cd Length: 97 Bit Score: 71.59 E-value: 9.83e-16
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Retrotrans_gag super family | cl46289 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
77-158 | 1.71e-14 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. The actual alignment was detected with superfamily member pfam16297: Pssm-ID: 480629 Cd Length: 112 Bit Score: 68.79 E-value: 1.71e-14
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FtsL2 super family | cl44142 | Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; |
7-38 | 4.48e-03 | |||
Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; The actual alignment was detected with superfamily member COG4839: Pssm-ID: 443867 Cd Length: 123 Bit Score: 36.47 E-value: 4.48e-03
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Name | Accession | Description | Interval | E-value | |||
Retrotrans_gag | pfam03732 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
119-212 | 9.83e-16 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. Pssm-ID: 367628 Cd Length: 97 Bit Score: 71.59 E-value: 9.83e-16
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DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
77-158 | 1.71e-14 | |||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 68.79 E-value: 1.71e-14
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FtsL2 | COG4839 | Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; |
7-38 | 4.48e-03 | |||
Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443867 Cd Length: 123 Bit Score: 36.47 E-value: 4.48e-03
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bZIP_ATF2 | cd14687 | Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar ... |
11-48 | 5.27e-03 | |||
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain; ATF-2 is a sequence-specific DNA-binding protein that belongs to the Basic leucine zipper (bZIP) family of transcription factors. In response to stress, it activates a variety of genes including cyclin A, cyclin D, and c-Jun. ATF-2 also plays a role in the DNA damage response that is independent of its transcriptional activity. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription. Pssm-ID: 269835 [Multi-domain] Cd Length: 61 Bit Score: 34.81 E-value: 5.27e-03
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Name | Accession | Description | Interval | E-value | |||
Retrotrans_gag | pfam03732 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
119-212 | 9.83e-16 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. Pssm-ID: 367628 Cd Length: 97 Bit Score: 71.59 E-value: 9.83e-16
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DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
77-158 | 1.71e-14 | |||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 68.79 E-value: 1.71e-14
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Ty3_capsid | pfam19259 | Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the ... |
86-223 | 6.54e-07 | |||
Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the Ty3 transposons of yeast as well as other transposable elements. Pssm-ID: 437091 [Multi-domain] Cd Length: 197 Bit Score: 49.01 E-value: 6.54e-07
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FtsL2 | COG4839 | Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; |
7-38 | 4.48e-03 | |||
Cell division protein FtsL [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443867 Cd Length: 123 Bit Score: 36.47 E-value: 4.48e-03
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bZIP_ATF2 | cd14687 | Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar ... |
11-48 | 5.27e-03 | |||
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain; ATF-2 is a sequence-specific DNA-binding protein that belongs to the Basic leucine zipper (bZIP) family of transcription factors. In response to stress, it activates a variety of genes including cyclin A, cyclin D, and c-Jun. ATF-2 also plays a role in the DNA damage response that is independent of its transcriptional activity. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription. Pssm-ID: 269835 [Multi-domain] Cd Length: 61 Bit Score: 34.81 E-value: 5.27e-03
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Blast search parameters | ||||
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