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Conserved domains on  [gi|53850620|ref|NP_001005546|]
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tetratricopeptide repeat protein 36 [Rattus norvegicus]

Protein Classification

NlpI family protein( domain architecture ID 11469168)

NlpI family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-160 8.24e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.47  E-value: 8.24e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  42 QAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarq 121
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA--- 143

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 53850620 122 sFVQRGLLARFQGRDDDARRDFEQAARLGSSFARRQLVL 160
Cdd:COG4785 144 -YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-160 8.24e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.47  E-value: 8.24e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  42 QAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarq 121
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA--- 143

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 53850620 122 sFVQRGLLARFQGRDDDARRDFEQAARLGSSFARRQLVL 160
Cdd:COG4785 144 -YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 48-118 2.58e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 2.58e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 53850620    48 SKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRA 118
Cdd:TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
TPR_12 pfam13424
Tetratricopeptide repeat;
80-149 7.28e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 7.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 53850620    80 ERASAYNNRAQARRLQGDVAGALEDLERAVTLS----GGRGRAARQSFVQRGLLARFQGRDDDARRDFEQAARL 149
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 57-183 1.57e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 38.23  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620   57 RAAEA---GDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLLARFQ 133
Cdd:PLN03088   8 KAKEAfvdDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA----YLRKGTACMKL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 53850620  134 GRDDDARRDFEQAARLGSSFARrqlvllnpYAAL---CNRMLADMMGQLSAPS 183
Cdd:PLN03088  84 EEYQTAKAALEKGASLAPGDSR--------FTKLikeCDEKIAEEEKDLVQPV 128
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 60-112 6.13e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 36.45  E-value: 6.13e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 53850620  60 EAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLS 112
Cdd:cd24142  12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD 64
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-160 8.24e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.47  E-value: 8.24e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  42 QAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarq 121
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA--- 143

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 53850620 122 sFVQRGLLARFQGRDDDARRDFEQAARLGSSFARRQLVL 160
Cdd:COG4785 144 -YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 42-149 2.75e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 2.75e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  42 QAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarq 121
Cdd:COG3914  72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA--- 148

                        90       100
                ....*....|....*....|....*...
gi 53850620 122 sFVQRGLLARFQGRDDDARRDFEQAARL 149
Cdd:COG3914 149 -YLNLGEALRRLGRLEEAIAALRRALEL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-173 5.98e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 5.98e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQ 125
Cdd:COG0457  40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA----LYN 115

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAALCNRMLA 173
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-155 8.68e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 8.68e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQ 125
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA----LNN 81

                        90       100       110
                ....*....|....*....|....*....|
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSSFAR 155
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKALELDPDDAE 111
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 49-168 1.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 1.60e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  49 KALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGL 128
Cdd:COG3914 113 EALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA----LNNLGN 188

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 53850620 129 LARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAALC 168
Cdd:COG3914 189 ALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-174 4.00e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.46  E-value: 4.00e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  50 ALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLL 129
Cdd:COG0457  78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA----LYNLGIA 153

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 53850620 130 ARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAALCNRMLAD 174
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
58-155 1.20e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 1.20e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  58 AAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEdLERAVTLSGGRGRAarqsFVQRGLLARFQGRDD 137
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEA----LLNLAELLLELGDYD 76

                        90
                ....*....|....*...
gi 53850620 138 DARRDFEQAARLGSSFAR 155
Cdd:COG3063  77 EALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 46-167 1.23e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 1.23e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAArqsfVQ 125
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR----LN 77

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAAL 167
Cdd:COG4783  78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-159 1.32e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 1.32e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  42 QAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARq 121
Cdd:COG4235  11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY- 89

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 53850620 122 sfvQRGLLARFQGRDDDARRDFEQAARLGSSFARRQLV 159
Cdd:COG4235  90 ---LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 46-149 7.65e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 7.65e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARQsfvq 125
Cdd:COG4783  36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR---- 111

                        90       100
                ....*....|....*....|....
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARL 149
Cdd:COG4783 112 LARAYRALGRPDEAIAALEKALEL 135
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 6-149 1.45e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 1.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620   6 DQAVLQAILNPNTPFGDVVGLDLEETEEGDEDGVFPQAQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAY 85
Cdd:COG5010  12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 53850620  86 NNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARqsfvQRGLLARFQGRDDDARRDFEQAARL 149
Cdd:COG5010  92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS----NLAALLLSLGQDDEAKAALQRALGT 151
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 48-118 2.58e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 2.58e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 53850620    48 SKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRA 118
Cdd:TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
75-155 2.91e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.91e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  75 ISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLLARFQGRDDDARRDFEQAARLGSSFA 154
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA----LYNLGLAYLRLGRYEEALADYEQALELDPDDA 76


                .
gi 53850620 155 R 155
Cdd:COG0457  77 E 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 40-111 1.13e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.90  E-value: 1.13e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 53850620  40 FPQAQLEQSKALElqgvraaEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTL 111
Cdd:COG3914 145 FAEAYLNLGEALR-------RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-167 1.31e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.31e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQ 125
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA----LLL 183

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAAL 167
Cdd:COG2956 184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 67-151 1.39e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620    67 ALERFGKAIS---LLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGrgraARQSFVQRGLLARFQGRDDDARRDF 143
Cdd:TIGR00990 313 AARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDF 388


                  ....*...
gi 53850620   144 EQAARLGS 151
Cdd:TIGR00990 389 DKALKLNS 396
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-152 3.35e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 3.35e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARqsfvQ 125
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP----R 217

                        90       100
                ....*....|....*....|....*..
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSS 152
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPS 244
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-167 4.17e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.98  E-value: 4.17e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  43 AQLEQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqs 122
Cdd:COG3914  39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEA---- 114

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 53850620 123 FVQRGLLARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAAL 167
Cdd:COG3914 115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 60-160 5.20e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 5.20e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  60 EAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLLARFQGRDDDA 139
Cdd:COG2956  88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA----YCELAELYLEQGDYDEA 163

                        90       100
                ....*....|....*....|.
gi 53850620 140 RRDFEQAARLGSSFARRQLVL 160
Cdd:COG2956 164 IEALEKALKLDPDCARALLLL 184
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 50-153 5.49e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.97  E-value: 5.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620    50 ALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLL 129
Cdd:TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI----YYHRAQL 408

                          90       100
                  ....*....|....*....|....
gi 53850620   130 ARFQGRDDDARRDFEQAARLGSSF 153
Cdd:TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDF 432
TPR_12 pfam13424
Tetratricopeptide repeat;
80-149 7.28e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 7.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 53850620    80 ERASAYNNRAQARRLQGDVAGALEDLERAVTLS----GGRGRAARQSFVQRGLLARFQGRDDDARRDFEQAARL 149
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-170 8.66e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 8.66e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  46 EQSKALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARQSFVQ 125
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 53850620 126 RGLLARFQGRDDDARRDFEQAARLGSSFARRQLVLLNPYAALCNR 170
Cdd:COG0457 188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 57-183 1.57e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 38.23  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620   57 RAAEA---GDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLLARFQ 133
Cdd:PLN03088   8 KAKEAfvdDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA----YLRKGTACMKL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 53850620  134 GRDDDARRDFEQAARLGSSFARrqlvllnpYAAL---CNRMLADMMGQLSAPS 183
Cdd:PLN03088  84 EEYQTAKAALEKGASLAPGDSR--------FTKLikeCDEKIAEEEKDLVQPV 128
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 41-148 2.99e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 37.66  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620    41 PQAQLEQ-SKALEL----------QGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAV 109
Cdd:TIGR00990 347 HLEALADlSKSIELdprvtqsyikRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 53850620   110 TLSGGRgraaRQSFVQRGLLARFQGRDDDARRDFEQAAR 148
Cdd:TIGR00990 427 DLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKK 461
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 60-162 3.15e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.74  E-value: 3.15e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  60 EAGDLHTALERFGKAISLLPE---RASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAArQSFVQRGLLARFQGRD 136
Cdd:COG1729   5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP-DALLKLGLSYLELGDY 83

                        90       100
                ....*....|....*....|....*...
gi 53850620 137 DDARRDFEQAARL--GSSFARRQLVLLN 162
Cdd:COG1729  84 DKARATLEELIKKypDSEAAKEARARLA 111
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-167 3.39e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.02  E-value: 3.39e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  53 LQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAArqsfVQRGLLARF 132
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL----LELAQDYLK 88

                        90       100       110
                ....*....|....*....|....*....|....*
gi 53850620 133 QGRDDDARRDFEQAARLGSSFARRQLVLLNPYAAL 167
Cdd:COG2956  89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123
TPR_1 pfam00515
Tetratricopeptide repeat;
82-111 4.48e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 4.48e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 53850620    82 ASAYNNRAQARRLQGDVAGALEDLERAVTL 111
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 67-149 5.75e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 35.37  E-value: 5.75e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53850620  67 ALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAarqsFVQRGLLARFQGRDDDARRDFEQA 146
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA----LLDLAEALLAAGDTEEAEELLERA 77


                ...
gi 53850620 147 ARL 149
Cdd:COG4235  78 LAL 80
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 60-112 6.13e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 36.45  E-value: 6.13e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 53850620  60 EAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLS 112
Cdd:cd24142  12 DQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD 64
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 50-112 6.48e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 35.55  E-value: 6.48e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 53850620  50 ALELQGVRAAEAGDLHTALERFGKAISLLPERASAYNNRAQARRLQGDVAGALEDLERAVTLS 112
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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