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Conserved domains on  [gi|830260157|ref|NP_001006956|]
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claudin domain-containing protein 1 [Rattus norvegicus]

Protein Classification

PMP-22/EMP/MP20 family protein( domain architecture ID 229584)

PMP-22/EMP/MP20 family tetraspan membrane protein similar to human claudin-9 (hCLDN-9) which is highly expressed in the inner ear, essential for hearing and a high-affinity receptor of CpE

Gene Ontology:  GO:0016020
PubMed:  19706201

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PMP22_Claudin super family cl21598
PMP-22/EMP/MP20/Claudin family;
17-234 1.87e-13

PMP-22/EMP/MP20/Claudin family;


The actual alignment was detected with superfamily member pfam13903:

Pssm-ID: 473919 [Multi-domain]  Cd Length: 191  Bit Score: 66.68  E-value: 1.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   17 LISTIYMAASIGTDFWYEYQsPAQENSSDANriawedfmgdeadektyndALFRyngNLGLWRRCitipknthwyappER 96
Cdd:pfam13903   1 ILAFALLLIAFATDYWLVLD-VALTGINNYT-------------------CLFA---HLGLWRHC-------------FK 44
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   97 TESFEVVTKCMSF--TLNEQFMEKYVDPGNHNSGIDLLRTYLWR-CQFLLPFvSLGLMCFGALIGLCACVCRSLYPTIAT 173
Cdd:pfam13903  45 SEVDVDSDNQTRFfgCLNQVPNPFPTFEEEIVSFSVTSLPGLTRfVQAFAIL-SLVLIVCGVVCGLLALPKQSVFLLLAA 123
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 830260157  174 GILHLLAGLCTLGSVSCYV----AGIELLHQKLG--LPKNVSGEFGWSFCLACVSAPLQFMASALFI 234
Cdd:pfam13903 124 GILFLLSGVLGLLGVIVFGqsvkLVFEEYFRQWMpeHQNNVRISFGWSFALAWAGVVLSLLAGLLFL 190
 
Name Accession Description Interval E-value
Claudin_2 pfam13903
PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight ...
17-234 1.87e-13

PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight junctions between cells.


Pssm-ID: 372799 [Multi-domain]  Cd Length: 191  Bit Score: 66.68  E-value: 1.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   17 LISTIYMAASIGTDFWYEYQsPAQENSSDANriawedfmgdeadektyndALFRyngNLGLWRRCitipknthwyappER 96
Cdd:pfam13903   1 ILAFALLLIAFATDYWLVLD-VALTGINNYT-------------------CLFA---HLGLWRHC-------------FK 44
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   97 TESFEVVTKCMSF--TLNEQFMEKYVDPGNHNSGIDLLRTYLWR-CQFLLPFvSLGLMCFGALIGLCACVCRSLYPTIAT 173
Cdd:pfam13903  45 SEVDVDSDNQTRFfgCLNQVPNPFPTFEEEIVSFSVTSLPGLTRfVQAFAIL-SLVLIVCGVVCGLLALPKQSVFLLLAA 123
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 830260157  174 GILHLLAGLCTLGSVSCYV----AGIELLHQKLG--LPKNVSGEFGWSFCLACVSAPLQFMASALFI 234
Cdd:pfam13903 124 GILFLLSGVLGLLGVIVFGqsvkLVFEEYFRQWMpeHQNNVRISFGWSFALAWAGVVLSLLAGLLFL 190
 
Name Accession Description Interval E-value
Claudin_2 pfam13903
PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight ...
17-234 1.87e-13

PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight junctions between cells.


Pssm-ID: 372799 [Multi-domain]  Cd Length: 191  Bit Score: 66.68  E-value: 1.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   17 LISTIYMAASIGTDFWYEYQsPAQENSSDANriawedfmgdeadektyndALFRyngNLGLWRRCitipknthwyappER 96
Cdd:pfam13903   1 ILAFALLLIAFATDYWLVLD-VALTGINNYT-------------------CLFA---HLGLWRHC-------------FK 44
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830260157   97 TESFEVVTKCMSF--TLNEQFMEKYVDPGNHNSGIDLLRTYLWR-CQFLLPFvSLGLMCFGALIGLCACVCRSLYPTIAT 173
Cdd:pfam13903  45 SEVDVDSDNQTRFfgCLNQVPNPFPTFEEEIVSFSVTSLPGLTRfVQAFAIL-SLVLIVCGVVCGLLALPKQSVFLLLAA 123
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 830260157  174 GILHLLAGLCTLGSVSCYV----AGIELLHQKLG--LPKNVSGEFGWSFCLACVSAPLQFMASALFI 234
Cdd:pfam13903 124 GILFLLSGVLGLLGVIVFGqsvkLVFEEYFRQWMpeHQNNVRISFGWSFALAWAGVVLSLLAGLLFL 190
PMP22_Claudin pfam00822
PMP-22/EMP/MP20/Claudin family;
172-233 5.98e-05

PMP-22/EMP/MP20/Claudin family;


Pssm-ID: 395662  Cd Length: 162  Bit Score: 42.36  E-value: 5.98e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 830260157  172 ATGILHLLAGLCTLGSVSCYVAGIELLHQKlGLPKNVSGEFGWSFCLACVSAPLQFMASALF 233
Cdd:pfam00822 102 LAGIIFLVSGLCVLVGASIYTSRIATDFGN-PFTPNRKYSFGYSFILGWVAFALAFIGGVLY 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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