|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
191-737 |
1.29e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 191 EEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERA 270
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 271 AKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEvhqmrldigklnkiREQIHKKLHHTEDQKAEVEQH 350
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE--------------LAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 351 KETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQK 430
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 431 QRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQD 510
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 511 EIT-------DMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEER 583
Cdd:COG1196 541 EAAlaaalqnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 584 KLL--RIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKK 661
Cdd:COG1196 621 TLLgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56961680 662 LRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEEELENPLNVHRWRKLEASDPNAYELIQKIHTLQKRL 737
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
155-682 |
9.52e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 9.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 155 KEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDS 234
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 235 RQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEE 314
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 315 EVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERdilnknml 394
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL-------- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 395 kavnATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHL------EKERDRYINQASDLTQKVLMNMEDIKVRET 468
Cdd:COG1196 487 ----AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavligvEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 469 QIFDYRKKIAESEI----KLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLkimihQVDELKEDISAKESALVKLH 544
Cdd:COG1196 563 IEYLKAAKAGRATFlpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYV-----LGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 545 LEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDEL 624
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 56961680 625 ALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQE 682
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
250-588 |
9.81e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 9.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 250 KEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKI 329
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 330 REQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDEllrerdilnknmlkavnatqkqtdlvkl 409
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE---------------------------- 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 410 heqakrnLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQN 489
Cdd:TIGR02168 808 -------LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 490 LYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLhleQQRIEKEKETLKAELQKLRQQAL 569
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL---EVRIDNLQERLSEEYSLTLEEAE 957
|
330 340
....*....|....*....|
gi 56961680 570 ETKHFIEKQEAE-ERKLLRI 588
Cdd:TIGR02168 958 ALENKIEDDEEEaRRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
478-756 |
1.43e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 478 AESEIKLKQQQNLYEAVrsDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETL 557
Cdd:TIGR02168 209 AEKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 558 KAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSV 637
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 638 LNKGESQYNQRLEDMRILRLEIKKLRREkgiLARSMANVEELRQEFFHMQRELLKERTRCRALEEELENPLNVHRWRKLE 717
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQ---IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270
....*....|....*....|....*....|....*....
gi 56961680 718 ASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEK 756
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
36-605 |
1.68e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 36 LEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQK 115
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 116 AKETILALKEEIVNLTKlveqgsglsmdqhsNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEH 195
Cdd:COG1196 314 LEERLEELEEELAELEE--------------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 196 AISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELE 275
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 276 QFQMRNAKLQQENEQHslvceqlsQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHtEDQKAEVEQHKETLK 355
Cdd:COG1196 460 ALLELLAELLEEAALL--------EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 356 NQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIi 435
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR- 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 436 fHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDM 515
Cdd:COG1196 610 -EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 516 KRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGE 595
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|
gi 56961680 596 RLRQKKELDQ 605
Cdd:COG1196 769 LERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
473-808 |
6.74e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 6.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 473 YRKKIAESEIKLKQ-QQNL--YEAVRS--DRNLYS-----------KNLVEAQDEitdmkRKLKIMIHQVDELKEDISAK 536
Cdd:COG1196 170 YKERKEEAERKLEAtEENLerLEDILGelERQLEPlerqaekaeryRELKEELKE-----LEAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 537 ESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQviserdiLGSQ 616
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-------LEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 617 LVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTR 696
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 697 CRALEEELEnplnvhrwRKLEASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMEL--KHVLARQPGPEAA 774
Cdd:COG1196 398 LAAQLEELE--------EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELeeEEEALLELLAELL 469
|
330 340 350
....*....|....*....|....*....|....
gi 56961680 775 EQLKLYRRTLHDKKQQLKVLSSELNMYEVQSKEY 808
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-709 |
6.82e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 6.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 92 IASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVK 171
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 172 LRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKE 251
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 252 ELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALE-----LKAKEEEVHQMRLDIGKL 326
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErleeaLEELREELEEAEQALDAA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 327 NKIREQIHKKLHHTEDQKAEVEQHKETLKNQIV--------------------GLEREVEA------------------- 367
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlselisvdeGYEAAIEAalggrlqavvvenlnaakk 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 368 ---SKKQAELDRKAMDEL--LRERDILNKNMLKAVNATQKQT---DLVKLHEQAKRNLEGEIQNYK-----DEAQKQRKI 434
Cdd:TIGR02168 561 aiaFLKQNELGRVTFLPLdsIKGTEIQGNDREILKNIEGFLGvakDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 435 IFHLEK---------ERDRYINQASDLTQKVLMNME-DIKVRETQIFDYRKKIAESEIKLkqqqnlyEAVRSDRNLYSKN 504
Cdd:TIGR02168 641 LRPGYRivtldgdlvRPGGVITGGSAKTNSSILERRrEIEELEEKIEELEEKIAELEKAL-------AELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 505 LVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERK 584
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 585 LL-------RIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRL 657
Cdd:TIGR02168 794 LKeelkalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 56961680 658 EIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEEELENPLN 709
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
396-641 |
8.42e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 8.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 396 AVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRK 475
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 476 KIAESEIKLKQQQNLYEAV-----RSDRNLYSKNLVEAQDeITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRI 550
Cdd:COG4942 91 EIAELRAELEAQKEELAELlralyRLGRQPPLALLLSPED-FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 551 EKEKETLKAELQKLRQQALEtkhfIEKQEAEERKLLriiAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEK 630
Cdd:COG4942 170 EAERAELEALLAELEEERAA----LEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|.
gi 56961680 631 IKIQQSVLNKG 641
Cdd:COG4942 243 TPAAGFAALKG 253
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
323-671 |
8.43e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 8.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 323 IGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKK----QAELDRKAMDELLRERDILNKNMLKAVN 398
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykelKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 399 ATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNME-------DIKVRETQIF 471
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRErlanlerQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 472 DYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIE 551
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 552 KEKETLKAELQKLRQQALEtkHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKI 631
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 56961680 632 KIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILAR 671
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-614 |
2.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 65 RELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQ 144
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 145 HSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQqeteRSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKE 224
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 225 LKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQ 304
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 305 KALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHH-TEDQKAEVEQHKETLKNQIVGLEREVEasKKQAELDRKAMDELL 383
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLLAGLRGLAGAVAVLIGVE--AAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 384 RERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDI 463
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 464 KVRETQIFDYRKKIAESE-IKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVK 542
Cdd:COG1196 629 AARLEAALRRAVTLAGRLrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56961680 543 LHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILG 614
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-487 |
3.70e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 225 LKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQ--EN 302
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqiEQ 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 303 QQKAL-----ELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRK 377
Cdd:TIGR02168 794 LKEELkalreALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 378 AMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDeaqKQRKIIFHLEKERDRYINQASDLTQKVL 457
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
250 260 270
....*....|....*....|....*....|
gi 56961680 458 MNMEDIKVRETQIFDYRKKIAESEIKLKQQ 487
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
69-665 |
4.74e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 69 AEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKlVEQGSGLSMDQHSNI 148
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE-ERNNEEIRKFEEARM 1262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 149 RDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAiSQFQQEIQQRQNEASREFRKKEKLEKELKQI 228
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 229 QADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQmRNAKLQQENEQHSLVCEQL--SQENQQKA 306
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELkkAAAAKKKA 1420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 307 LELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMD-----E 381
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakkkaD 1500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 382 LLRERDILNKNMLKAVNATQ-KQTDLVKLHEQAKRNLE---GEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVL 457
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEaKKADEAKKAEEAKKADEakkAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 458 MNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKedisaKE 537
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK-----KA 1655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 538 SALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQL 617
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 56961680 618 VRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRRE 665
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
168-761 |
9.66e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 9.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 168 EVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQ 247
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 248 KSKEELQKLEQQLKEqkilnERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQmRLDIGKln 327
Cdd:PTZ00121 1278 RKADELKKAEEKKKA-----DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK-AAEAAK-- 1349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 328 KIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNML-KAVNATQKQTDL 406
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAkKKADEAKKKAEE 1429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 407 VKLHEQAKRNLE--GEIQNYKDEAQKQRKIIFHLEKERDRyinQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKL 484
Cdd:PTZ00121 1430 KKKADEAKKKAEeaKKADEAKKKAEEAKKAEEAKKKAEEA---KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 485 KQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKL 564
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 565 RQQALETKHFIEKQEAEERKL----LRIIAEA--DGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVL 638
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMkaeeAKKAEEAkiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 639 NKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQR---ELLKE----RTRCRALEEELENPLNVH 711
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeELKKAeeenKIKAEEAKKEAEEDKKKA 1746
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 56961680 712 RWRKLEASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMEL 761
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
148-766 |
1.05e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 148 IRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQ 227
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 228 IQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQM------------RNAKLQQENEQHSLVC 295
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleelesrleelEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 296 EQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELD 375
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 376 RKAMDELLRERDILN--KNMLKAV-NATQKQTDLVK--LHEQAKRN-----------------------LEGEIQNYKDE 427
Cdd:TIGR02168 474 EQALDAAERELAQLQarLDSLERLqENLEGFSEGVKalLKNQSGLSgilgvlselisvdegyeaaieaaLGGRLQAVVVE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 428 -AQKQRKIIFHLEKER--------------------DRYINQASDLTQKVLMNMEDIKVRETQIFDY---RKKIAES-EI 482
Cdd:TIGR02168 554 nLNAAKKAIAFLKQNElgrvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgGVLVVDDlDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 483 KLKQQQNLYEAVR---------SDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKE 553
Cdd:TIGR02168 634 ALELAKKLRPGYRivtldgdlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 554 KETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKI 633
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 634 QQSVLNKGESQY---NQRLEDMRI----LRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEEELEN 706
Cdd:TIGR02168 794 LKEELKALREALdelRAELTLLNEeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 707 PLNVHrwrkLEASDpnayELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLA 766
Cdd:TIGR02168 874 ELEAL----LNERA----SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-385 |
6.06e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 6.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 51 KKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNL 130
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 131 TKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHaISQFQQEIQQRQNE 210
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK-AEEARIEEVMKLYE 1602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 211 ASREFRKKEKLEKELKQIQADMDSRQTEI-KALQQYVQKSKEELQKLEQQLKEQ---KILNERAAKELEQFQMRNAKLQQ 286
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEkKKVEQLKKKEAEEKKKAEELKKAEeenKIKAAEEAKKAEEDKKKAEEAKK 1682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 287 ENEQHSLVCEQLSQENQQ--KALELKAKEEEVHQMRLDIGK---LNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGL 361
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEakKAEELKKKEAEEKKKAEELKKaeeENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
|
330 340
....*....|....*....|....
gi 56961680 362 EREVEaskKQAELDRKAMDELLRE 385
Cdd:PTZ00121 1763 KKEEE---KKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
227-584 |
8.34e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 8.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 227 QIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKA 306
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 307 LELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHT-----EDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDE 381
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 382 LLRERDILNKNmlkaVNATQKQTDLVKLHeqaKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKvlmnme 461
Cdd:TIGR02169 838 LQEQRIDLKEQ----IKSIEKEIENLNGK---KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK------ 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 462 dIKVRETQIFDYRKKIAESEIKLkqqqnlyeAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALV 541
Cdd:TIGR02169 905 -IEELEAQIEKKRKRLSELKAKL--------EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNM 975
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 56961680 542 KLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERK 584
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-358 |
8.87e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 92 IASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVK 171
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 172 LRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKE 251
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 252 ELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQEneqhslvCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIRE 331
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250 260
....*....|....*....|....*..
gi 56961680 332 QIHKKLHHTEDQKAEVEQHKETLKNQI 358
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-706 |
2.13e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 13 ESAFEEMERDF---QGVLHELSGDKSlekfRIEYERLHAVmkksyDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQ 89
Cdd:TIGR02168 273 RLEVSELEEEIeelQKELYALANEIS----RLEQQKQILR-----ERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 90 TTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEV 169
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 170 VKLRESLAQTTEQQQETERSKEEAEhaISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKS 249
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEE--LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 250 KEELQKLEQQLKEQKILNERAAKELEQFQMRN------AKLQQENEQHsLVCEQLSQENQQKALELKAKEEEVHQMRLDI 323
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaiEAALGGRLQA-VVVENLNAAKKAIAFLKQNELGRVTFLPLDS 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 324 GKLNKI---REQIHKKLHHTEDQKAEVEQHKETLKNQIVGL-------EREVEASKKQAELDRKAM-----DELLRERDI 388
Cdd:TIGR02168 581 IKGTEIqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRivtldGDLVRPGGV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 389 LNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRET 468
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 469 QIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQ 548
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 549 R--------------IEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILG 614
Cdd:TIGR02168 821 NlrerleslerriaaTERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 615 SQLvrRNDELALLYEKIKIQQsvLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFfhmqrELLKER 694
Cdd:TIGR02168 901 EEL--RELESKRSELRRELEE--LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED-----DEEEAR 971
|
730
....*....|..
gi 56961680 695 TRCRALEEELEN 706
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
412-682 |
2.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 412 QAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLY 491
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 492 EAVRSDRN-LYSKNLVEAQDEITDMKRKLKimiHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALE 570
Cdd:TIGR02169 775 HKLEEALNdLEARLSHSRIPEIQAELSKLE---EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 571 TKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDIL---GSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQ 647
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaqLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
250 260 270
....*....|....*....|....*....|....*
gi 56961680 648 RLEDMRILRLEIKKLRREKGILARSMANVEELRQE 682
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-367 |
2.94e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 55 DNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLV 134
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 135 EQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASRE 214
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 215 FRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQE-NEQHSL 293
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSL 951
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 294 VCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIR-------EQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVE 366
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
.
gi 56961680 367 A 367
Cdd:TIGR02168 1032 E 1032
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
251-825 |
3.22e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 251 EELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIR 330
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 331 EQIHKKlhhtEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELlrerdilnKNMLKAVNATQKQTDLVKLH 410
Cdd:PRK03918 238 EEIEEL----EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 411 EQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRyINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESE-IKLKQQQN 489
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERHELYEEAKAKKEELErLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 490 LYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESA-----LVKLHLEQQRIEKEKETLKAELQKL 564
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 565 RQQALETKHFIEKQEAEERKLLRIIAEaDGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQ 644
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 645 YNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRcraleeELENPLNvhRWRKLEASDpnay 724
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLK------ELEPFYN--EYLELKDAE---- 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 725 eliQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLARQPGPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEVQ 804
Cdd:PRK03918 612 ---KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688
|
570 580
....*....|....*....|.
gi 56961680 805 SKEYKYEVEKLTNELQNLKKK 825
Cdd:PRK03918 689 REEIKKTLEKLKEELEEREKA 709
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-842 |
6.57e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 151 LLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKlekelkQIQA 230
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG------ELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 231 DMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELK 310
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 311 AKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILN 390
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 391 KNMLKA----VNATQKQTDLVKLHEQAKRNL---EGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDL----------- 452
Cdd:TIGR02169 462 ADLSKYeqelYDLKEEYDRVEKELSKLQRELaeaEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgeryatai 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 453 -------TQKVLMNMEDIKVRETQIFDYRKKIAESEI---KLKQQQNLYEAVRSDRNL-YSKNLVEAQDEIT-------- 513
Cdd:TIGR02169 542 evaagnrLNNVVVEDDAVAKEAIELLKRRKAGRATFLplnKMRDERRDLSILSEDGVIgFAVDLVEFDPKYEpafkyvfg 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 514 --------DMKRKLKIMIHQVdELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRqqaletkhfiEKQEAEERKL 585
Cdd:TIGR02169 622 dtlvvediEAARRLMGKYRMV-TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLR----------ERLEGLKREL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 586 LRIIAEadgeRLRQKKELDQVISERDILGSQLVRrndelallyekIKIQQSVLNKGESQYNQRLEDmriLRLEIKKLRRE 665
Cdd:TIGR02169 691 SSLQSE----LRRIENRLDELSQELSDASRKIGE-----------IEKEIEQLEQEEEKLKERLEE---LEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 666 KGILARSMANVEELRQEffhMQRELLKERtrcrALEEELENPLNVHRWRKLEASdpnaYELIQKIHTLQKRLISKTEEVV 745
Cdd:TIGR02169 753 IENVKSELKELEARIEE---LEEDLHKLE----EALNDLEARLSHSRIPEIQAE----LSKLEEEVSRIEARLREIEQKL 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 746 EKelLLQEKEKLYMELKHVLARQPgpEAAEQLKLYRRTLHDKKQQLKVLSSELnmyevqsKEYKYEVEKLTNELQNLKKK 825
Cdd:TIGR02169 822 NR--LTLEKEYLEKEIQELQEQRI--DLKEQIKSIEKEIENLNGKKEELEEEL-------EELEAALRDLESRLGDLKKE 890
|
730
....*....|....*...
gi 56961680 826 YL-AQKRKEQLQKNKDTA 842
Cdd:TIGR02169 891 RDeLEAQLRELERKIEEL 908
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
236-693 |
2.84e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 236 QTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQfqmRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEE 315
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE---KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQD 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 316 VHQmrldigKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASkkqaELDRKAMDELLRERDILNKNMLK 395
Cdd:TIGR04523 308 WNK------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS----ESENSEKQRELEEKQNEIEKLKK 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 396 AvnaTQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIK-------VRET 468
Cdd:TIGR04523 378 E---NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnqdsVKEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 469 QIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQ 548
Cdd:TIGR04523 455 IIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 549 RIEKEKETLKAELQK---------LRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVR 619
Cdd:TIGR04523 535 EKESKISDLEDELNKddfelkkenLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS 614
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56961680 620 RNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKE 693
Cdd:TIGR04523 615 LEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKE 688
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-744 |
5.25e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 525 QVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELD 604
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 605 QVISERDILGsqlvrRNDELALLYEKIKIQQSVLNKGESQY--NQRLEDMRILRLEIKKLRREKGILARSMANVEELRQE 682
Cdd:COG4942 108 ELLRALYRLG-----RQPPLALLLSPEDFLDAVRRLQYLKYlaPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56961680 683 FFHMQRELLKERTRCRALEEELENPLNVHRwRKLEASDPNAYELIQKIHTLQKRLISKTEEV 744
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELA-AELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
548-834 |
5.54e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 548 QRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIA----EADGERLRQKKELDQVISERDILGSQLvrrnDE 623
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVlrleELREELEELQEELKEAEEELEELTAEL----QE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 624 LALLYEKIKIQQSVLNKGESQYNQRLEDMRIlrlEIKKLRREKGILARSMANVEELRQEffhmqrellkertrcraLEEE 703
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALAN---EISRLEQQKQILRERLANLERQLEE-----------------LEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 704 LENPLnvhrwRKLEasdpnayELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLArqpgpEAAEQLKLYRRT 783
Cdd:TIGR02168 325 LEELE-----SKLD-------ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE-----ELEEQLETLRSK 387
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 56961680 784 LHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKKKYLAQKRKEQ 834
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
42-468 |
6.64e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 42 EYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETIL 121
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 122 ALKEEivnltklveqgsglsmdQHSNIRDLLRFKEEVTKERDqllsEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQ 201
Cdd:PTZ00121 1489 KKKAE-----------------EAKKKADEAKKAAEAKKKAD----EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 202 QEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIkaLQQYVQKSKEELQKLEQQLKEQKILNERAAKElEQFQMRN 281
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE--AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE-AKIKAEE 1624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 282 AKLQQENEQHSLVCEQLSQENQQKALELKAKEEEvhqmrldigklNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGL 361
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE-----------NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 362 EREVEASKKQAELDRKAMDELLRERDILNK----NMLKAVNATQKQTDLVKLHEQAKRNlEGEIQNYKDEAQKQRKIIFH 437
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKaeeeNKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEE 1772
|
410 420 430
....*....|....*....|....*....|.
gi 56961680 438 LEKERDRYINQASDLTQKVLMNMEDIKVRET 468
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
503-706 |
1.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 503 KNLVEAQDEITDMKRKLKIMIH------QVDELKEDISAKESALVKLHL-----EQQRIEKEKETLKAELQKLRQQALET 571
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPirelaeRYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 572 KHFIEKQEAEERKLLRIIAEADGERLRQ-KKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLE 650
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 56961680 651 DMRILRleikklrrekgilarsmanvEELRQEFFHMQRELLKERTRCRALEEELEN 706
Cdd:COG4913 395 ALEEEL--------------------EALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
40-706 |
1.23e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 40 RIEYERLHAVMKKSYDNEKR------LMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDK- 112
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKReyegyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKi 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 113 EQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEE 192
Cdd:TIGR02169 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 193 AEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAK 272
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 273 ELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKE 352
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 353 TLKNQIVGLER---------EVEASKKQA------ELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNL 417
Cdd:TIGR02169 522 GVHGTVAQLGSvgeryataiEVAAGNRLNnvvvedDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGF 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 418 EGEIQNYKDEAQKQRKIIFhlekeRDRYINQASDlTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAvrsd 497
Cdd:TIGR02169 602 AVDLVEFDPKYEPAFKYVF-----GDTLVVEDIE-AARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRS---- 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 498 rnlYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFI-- 575
Cdd:TIGR02169 672 ---EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLss 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 576 --EKQEAEERKLLRIIAEADGERLRQKKELDQVIS-ERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDM 652
Cdd:TIGR02169 749 leQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 56961680 653 RILRLEIKKLRREKGIL----ARSMANVEELRQEFFHMQRELLKERTRCRALEEELEN 706
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLkeqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-826 |
1.23e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 381 ELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRY------INQASDLTQ 454
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELeelkeeIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 455 KVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKnLVEAQDEITDMKRKLKIMIHQVDELKEDIS 534
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 535 AKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEER-----------KLLRIIAEADGERLRQKKEL 603
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlkkrltgltpeKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 604 DQVISERDILGSQLVRRNDELALLyEKIKIQQSVLNKgESQYNQRLEDMRILRLEIKKLRREkgiLARSMANVEELRQEF 683
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEEL-KKAKGKCPVCGR-ELTEEHRKELLEEYTAELKRIEKE---LKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 684 FHMQRELLKERTRCRALE-----EELENPLNVHRWRKLEASDPNAYELIQKIHTLQKRLISKTEEVVEKELLLQEKEKLY 758
Cdd:PRK03918 483 RELEKVLKKESELIKLKElaeqlKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 759 MELK---------HVLARQPGPEAAEQ-----------------LKLYRRTLHDKKQQLKVLSSELNMYEVQSKEYKYEV 812
Cdd:PRK03918 563 KKLDeleeelaelLKELEELGFESVEEleerlkelepfyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490
....*....|....
gi 56961680 813 EKLTNELQNLKKKY 826
Cdd:PRK03918 643 EELRKELEELEKKY 656
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
175-403 |
1.29e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 175 SLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQ 254
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 255 KLEQQLKEQKilneraakelEQFQMRNAKLQQeNEQHSLVCEQLSQENQQKALE--------LKAKEEEVHQMRLDIGKL 326
Cdd:COG4942 94 ELRAELEAQK----------EELAELLRALYR-LGRQPPLALLLSPEDFLDAVRrlqylkylAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56961680 327 NKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQ 403
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
238-705 |
1.98e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 238 EIKALQQYVQKSKEELQKLEQQLKEQKILNEraakELEQFQMRNAKLQQENEQhslvCEQLSQENQQKALELKAKEEEVH 317
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSKRK----LEEKIRELEERIEELKKEIEELE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 318 QMRLDIGKLNKIREQ---IHKKLHHTEDQKAEVEQHKETLKNQIVGLEREV-EASKKQAELD--RKAMDELLRERDILNK 391
Cdd:PRK03918 280 EKVKELKELKEKAEEyikLSEFYEEYLDELREIEKRLSRLEEEINGIEERIkELEEKEERLEelKKKLKELEKRLEELEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 392 NMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKV------ 465
Cdd:PRK03918 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcp 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 466 ----------RETQIFDYRKKIAESEIKLKQQQNLYEAVRsdrnlysKNLVEAQDEITDMKR--KLKIMIHQVDELK--- 530
Cdd:PRK03918 440 vcgrelteehRKELLEEYTAELKRIEKELKEIEEKERKLR-------KELRELEKVLKKESEliKLKELAEQLKELEekl 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 531 -----EDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQ 605
Cdd:PRK03918 513 kkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 606 VISERDILGSQLVRRND---ELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREkgilaRSMANVEELRQE 682
Cdd:PRK03918 593 RLKELEPFYNEYLELKDaekELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK-----YSEEEYEELREE 667
|
490 500
....*....|....*....|...
gi 56961680 683 FFHMQRELLKERTRCRALEEELE 705
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRRE 690
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
111-684 |
2.48e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 111 DKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSK 190
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 191 EEAEHAISQFQQEIQQRQNEAS------REFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQK 264
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEeleekvKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 265 ILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQK 344
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 345 AEVEQHKETLKNQIVGLER-EVEASKKQAELDRKAMDELLRERDILNKNMLKAvnatqkqtdlVKLHEQAKRNLEGEIQN 423
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE----------LKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 424 YKDEAQKQRKIIfHLEKERDRYINQASDLTQkvlMNMEDIKVRETQIfdyrKKIAESEIKLKQQQNLYEAVRSDRNLYSK 503
Cdd:PRK03918 485 LEKVLKKESELI-KLKELAEQLKELEEKLKK---YNLEELEKKAEEY----EKLKEKLIKLKGEIKSLKKELEKLEELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 504 NLVEAQDEITDMKRKLKIMIHQ--------VDELKEDISAKESA------LVKLHLEQQRIEKEKETLKAELQKLRQQAL 569
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPFyneyleLKDAEKELEREEKELKKLEEELDKAFEELA 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 570 ETKHFIEKQEAEERKLLRIIAEADGERLRQKK-ELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQ---Y 645
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKElekL 716
|
570 580 590
....*....|....*....|....*....|....*....
gi 56961680 646 NQRLEDMRILRLEIKKLRREkgILARSMANVEELRQEFF 684
Cdd:PRK03918 717 EKALERVEELREKVKKYKAL--LKERALSKVGEIASEIF 753
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-602 |
3.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 342 DQKAEVEQHKETLKNQIVGLEREVEASKKQAEldrkamdELLRERDILNKNMlkavnatQKQTDLVKLHEQAKRNLEGEI 421
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEK-------ALLKQLAALERRI-------AALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 422 QNYKDEAQKQRKiifHLEKERDRYINQASDLtqkvlmnmedikvretqifdYRKKIAESEIKLKQQQNLYEAVRsdRNLY 501
Cdd:COG4942 86 AELEKEIAELRA---ELEAQKEELAELLRAL--------------------YRLGRQPPLALLLSPEDFLDAVR--RLQY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 502 SKNLVEA-QDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEA 580
Cdd:COG4942 141 LKYLAPArREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
250 260
....*....|....*....|..
gi 56961680 581 EERKLLRIIAEADGERLRQKKE 602
Cdd:COG4942 221 EAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
511-825 |
3.52e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 511 EITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKEtLKAELQKLRQQALEtkhfiekqeAEERKLLRIIA 590
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-LLKEKREYEGYELL---------KEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 591 EADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKiqqsvlNKGESQYNQRLEDMRILRLEIKKLRREKGILA 670
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 671 RSMANVEELRQEffhMQRELLKERTRCRALEEELEnplnvhRWRKLEASDPNAYELIQKIHTLqkrLISKTEEVVEKELL 750
Cdd:TIGR02169 315 RELEDAEERLAK---LEAEIDKLLAEIEELEREIE------EERKRRDKLTEEYAELKEELED---LRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 751 LQEKEKLYMELKHVLARQPGPEAAEQLKLYRRT------LHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKK 824
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELqrlseeLADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
.
gi 56961680 825 K 825
Cdd:TIGR02169 463 D 463
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
225-826 |
5.94e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 225 LKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQ 304
Cdd:pfam05483 87 AEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCAR 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 305 KALELKAKEEEvhqmrldigklnkireqihkklhhtedqKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLR 384
Cdd:pfam05483 167 SAEKTKKYEYE----------------------------REETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLK 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 385 ER----DILNKNMLKAVNATQKQTDLVKLHEQAKRNlegeiqnykdeaqKQRKIIFHLEKERDRyinqASDLTQKVLMNM 460
Cdd:pfam05483 219 EDhekiQHLEEEYKKEINDKEKQVSLLLIQITEKEN-------------KMKDLTFLLEESRDK----ANQLEEKTKLQD 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 461 EDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLV----EAQDEITDMKRKLKIMIHQVDELKEDISAK 536
Cdd:pfam05483 282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICqlteEKEAQMEELNKAKAAHSFVVTEFEATTCSL 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 537 ESAlvkLHLEQQRIEKEKETLK---AELQKLRQQALETKHFIEKQEAEERKLLRIIAEaDGERLRQKKELDQVISERDIL 613
Cdd:pfam05483 362 EEL---LRTEQQRLEKNEDQLKiitMELQKKSSELEEMTKFKNNKEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 614 GSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRIlRLEIKKLRREKGILARSMANVE--ELRQEFFHMQRELL 691
Cdd:pfam05483 438 EQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKT-ELEKEKLKNIELTAHCDKLLLEnkELTQEASDMTLELK 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 692 KERTRCRALEEELENPLnvhrwRKLEASDPNAYELIQKIHTLQKRLISKTEEV------VEKELLLQEKEKLYMELKHVL 765
Cdd:pfam05483 517 KHQEDIINCKKQEERML-----KQIENLEEKEMNLRDELESVREEFIQKGDEVkckldkSEENARSIEYEVLKKEKQMKI 591
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56961680 766 ARQPGPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKKKY 826
Cdd:pfam05483 592 LENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
192-705 |
5.99e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 5.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 192 EAEHAISQFQQEIQQRQNEASREFRKKEKlekelkQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKE-QKILNERA 270
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDD------QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAfLDADIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 271 AKELEQFQMRNAKLQQENEQHSLVCE-QLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKL------------ 337
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKALTGkHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLavaeddlqales 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 338 ---HHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAEL--DRKAMDELL-RERDILNKNMLKAVNATQKQTDLVKLHE 411
Cdd:pfam12128 423 elrEQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELllQLENFDERIeRAREEQEAANAEVERLQSELRQARKRRD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 412 QAKRNLE------GEIQNYKDEAQKQ-----RKIIFHLEKERDRYINQASDLTQKVLMNMEDI--KVRETQIFD----YR 474
Cdd:pfam12128 503 QASEALRqasrrlEERQSALDELELQlfpqaGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdpEVWDGSVGGelnlYG 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 475 KKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEK 554
Cdd:pfam12128 583 VKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEK 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 555 ETLKAELQKLRQQALETK-HFIEKQEAEERKLLRIIAEADGERLRQKKE--------LDQVISERDilgSQLVRRNDELA 625
Cdd:pfam12128 663 QSEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLEEQKEQKREartekqayWQVVEGALD---AQLALLKAAIA 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 626 LLYEKIKIQQSVLnkgESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQE----FFHMQRELLKER----TRC 697
Cdd:pfam12128 740 ARRSGAKAELKAL---ETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEvlryFDWYQETWLQRRprlaTQL 816
|
....*...
gi 56961680 698 RALEEELE 705
Cdd:pfam12128 817 SNIERAIS 824
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
467-682 |
6.14e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 467 ETQIFDYRKKIAESEIKLK--QQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLh 544
Cdd:COG3206 181 EEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 545 leqqriekekeTLKAELQKLRQQaletkhfIEKQEAEERKLLRIIAEADGERLRQKKELDQViseRDILGSQLVRRNDEL 624
Cdd:COG3206 260 -----------LQSPVIQQLRAQ-------LAELEAELAELSARYTPNHPDVIALRAQIAAL---RAQLQQEAQRILASL 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 56961680 625 ALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRREKGILARSMANVEELRQE 682
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-392 |
7.68e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 7.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 155 KEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDS 234
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 235 RQTEIKALQQYVQKSKEELQKLEQQLKEQKILN-ERAAKELEQFQMRNAKLQQENEQ-------HSLVCEQLSQENQQKA 306
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLREIEQklnrltlEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 307 LELKAK----EEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDEL 382
Cdd:TIGR02169 843 IDLKEQiksiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
250
....*....|
gi 56961680 383 LRERDILNKN 392
Cdd:TIGR02169 923 KAKLEALEEE 932
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
227-540 |
8.20e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 8.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 227 QIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKA 306
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSA 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 307 LELKAKEEevHQMRLDIGKLNKIREQIHK-KLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELL-R 384
Cdd:pfam12128 681 NERLNSLE--AQLKQLDKKHQAWLEEQKEqKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYkR 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 385 ERDILNKNMLKAVNATQKQTDLVKLHEQAKRNlEGEIQNYKDEAQKQRKIifhlekERDRYINQASDLTQKVLmnmedik 464
Cdd:pfam12128 759 DLASLGVDPDVIAKLKREIRTLERKIERIAVR-RQEVLRYFDWYQETWLQ------RRPRLATQLSNIERAIS------- 824
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56961680 465 vretqifdyrkkiaESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESAL 540
Cdd:pfam12128 825 --------------ELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQG 886
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
210-617 |
1.07e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 210 EASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAA--KELEQFQMRNAKLQQE 287
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAleAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 288 NEQHSLV---CEQLSQENQQKALELKAKEEEV-HQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLER 363
Cdd:COG4717 155 LEELRELeeeLEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 364 EVEASKKQAELDRK---------------AMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEA 428
Cdd:COG4717 235 ELEAAALEERLKEArlllliaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 429 QKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKnLVEA 508
Cdd:COG4717 315 ELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRA-ALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 509 QDEITDMKRKLKIMIHQVDELKEDISAKESALvklhleqqriekEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRI 588
Cdd:COG4717 394 AEEYQELKEELEELEEQLEELLGELEELLEAL------------DEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 56961680 589 IaeadgERLRQKKELDQVISERDILGSQL 617
Cdd:COG4717 462 L-----EQLEEDGELAELLQELEELKAEL 485
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
227-665 |
1.46e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 227 QIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLK----EQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQ-E 301
Cdd:TIGR04523 44 TIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKileqQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKlE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 302 NQQKALELKAKEEEVHQMRL--DIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQaELDRKAM 379
Cdd:TIGR04523 124 VELNKLEKQKKENKKNIDKFltEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK-LLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 380 DELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNlegEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMN 459
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ---EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 460 MEDIKVRETQIFDYRKKIaeSEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESA 539
Cdd:TIGR04523 280 NKKIKELEKQLNQLKSEI--SDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 540 LVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVR 619
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 56961680 620 RNDELALLYEKIKIQQSVLNKGESQYNQRLEDMRILRLEIKKLRRE 665
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
475-625 |
1.74e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 475 KKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESAL--VKLHLEQQRIEK 552
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnVRNNKEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56961680 553 EKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELA 625
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
96-840 |
1.99e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 96 KKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRES 175
Cdd:pfam02463 215 LKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 176 LAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQK 255
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 256 LEQQLKEQKILNERAAKELEQ-FQMRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIH 334
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEeLELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 335 KKLHHTEDQKAEVEQ----HKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLH 410
Cdd:pfam02463 455 KQELKLLKDELELKKsedlLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 411 EQAKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNL 490
Cdd:pfam02463 535 GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 491 YEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALE 570
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 571 TKHFIEKQEAEERKLLRIIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIKIQQSVLNKGESQYNQRLE 650
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 651 DMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQR--ELLKERTRCRALEEELENPLNVHRWRKLEASDPNAYELIQ 728
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEeaELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 729 KIHTLQKRLISKTEEVVEKELLLQEKEKLYMELKHVLARQPGPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEvqsKEY 808
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAE---ILL 931
|
730 740 750
....*....|....*....|....*....|..
gi 56961680 809 KYEVEKLTNELQNLKKKYLAQKRKEQLQKNKD 840
Cdd:pfam02463 932 KYEEEPEELLLEEADEKEKEENNKEEEEERNK 963
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
418-599 |
3.30e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 418 EGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLKQQQNLYEAV--- 494
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 495 --RSDRN-------LYSKNLVEAQDEITDMKR---KLKIMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQ 562
Cdd:COG3883 95 lyRSGGSvsyldvlLGSESFSDFLDRLSALSKiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 56961680 563 KLRQQALETKHFIEKQEAEERKLLRIIAEADGERLRQ 599
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
624-839 |
3.94e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 624 LALLYEKIKIQQSVLNKGESQYNQR-LEDMRILRLEIKKLRREKGILARSMANVEELRQEFFHMQRELLKERTRCRALEE 702
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELnLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 703 ELENPLNVHRWRKLEASDPnayELIQKIHTLQKRLisktEEVVEKELLLQEKEKLYMELKHVLARQPGPEAAEQlklyRR 782
Cdd:COG4717 124 LLQLLPLYQELEALEAELA---ELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLEQLSLAT----EE 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 56961680 783 TLHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQNLKKKYLAQKRKEQLQKNK 839
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-837 |
4.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 146 SNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREF---------- 215
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELeaeiaslers 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 216 -----RKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQ 290
Cdd:TIGR02169 310 iaekeRELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 291 HSLVCEQLSQENQQKALELKAKEEEVHQMRLDIgklnkirEQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKK 370
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEEL-------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 371 QAELDRKAMDELLRERDILNKNMlkavnaTQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKI------IFHLEKERDR 444
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKEL------SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIqgvhgtVAQLGSVGER 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 445 YI----NQASDLTQKVLMNMEDIKVRETQIFDYRKKIAESEI---KLKQQQNLYEAVRSDRNL-YSKNLVEAQDEIT--- 513
Cdd:TIGR02169 537 YAtaieVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLplnKMRDERRDLSILSEDGVIgFAVDLVEFDPKYEpaf 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 514 -------------DMKRKLKIMIHQVdELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRqqaletkhfiEKQEA 580
Cdd:TIGR02169 617 kyvfgdtlvvediEAARRLMGKYRMV-TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLR----------ERLEG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 581 EERKLLRIIAeadgERLRQKKELDQVISERDILGSQLVRrndelallyekIKIQQSVLNKGESQYNQRLEDmriLRLEIK 660
Cdd:TIGR02169 686 LKRELSSLQS----ELRRIENRLDELSQELSDASRKIGE-----------IEKEIEQLEQEEEKLKERLEE---LEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 661 KLRREKGILARSMANVEELRQEffhMQRELLKErtrcRALEEELENPLNVHRWRKLEASdpnaYELIQKIHTLQKRLISK 740
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEE---LEEDLHKL----EEALNDLEARLSHSRIPEIQAE----LSKLEEEVSRIEARLRE 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 741 TEEVVEKelLLQEKEKLYMELKHVLARQpgPEAAEQLKLYRRTLHDKKQQLKVLSSELNMYEVQSKEYKYEVEKLTNELQ 820
Cdd:TIGR02169 817 IEQKLNR--LTLEKEYLEKEIQELQEQR--IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
|
730
....*....|....*..
gi 56961680 821 NLKKKYLAQKRKEQLQK 837
Cdd:TIGR02169 893 ELEAQLRELERKIEELE 909
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
224-591 |
5.63e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 224 ELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQ 303
Cdd:pfam05483 423 EKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 304 QKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELL 383
Cdd:pfam05483 503 ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 384 RERDILNKNMLKAVNATQKQTdlvklhEQAKRNLEgeiqnykdEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDI 463
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQI------ENKNKNIE--------ELHQENKALKKKGSAENKQLNAYEIKVNKLELELASA 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 464 KVRETQIFDYRKKiaESEIKLKQQQNLYEAVRSDRNLYSKNL-------VEAQDEITDMKRKLKIMIHQVDELKEDisaK 536
Cdd:pfam05483 649 KQKFEEIIDNYQK--EIEDKKISEEKLLEEVEKAKAIADEAVklqkeidKRCQHKIAEMVALMEKHKHQYDKIIEE---R 723
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 56961680 537 ESALVKLHLEQQRIEKEKETLKAELQKLRQQALETKHFIEKQEAEERKLLRIIAE 591
Cdd:pfam05483 724 DSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
250-649 |
6.30e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 250 KEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENeqhslvceQLSQENQQKALELKAKEEEVHQMRLDIGKLN-- 327
Cdd:COG3096 291 RRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDY--------QAASDHLNLVQTALRQQEKIERYQEDLEELTer 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 328 -----KIREQIHKKLHHTEDQKAEVEQHKETLKNQIVGLEREVEASKKQAELDRKAMDELLRERDILNKNMLKAVNATQK 402
Cdd:COG3096 363 leeqeEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 403 QTDLVKLHEQAKRNLEGEIQ--NYKDEAQKQ--------RKIIFHLEKErdryinQASDLTQKVLMNMEDIKVRETQIFD 472
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQklSVADAARRQfekayelvCKIAGEVERS------QAWQTARELLRRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 473 YRKKIAESEIKLKQQQNLyEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESAlvklhLEQQRiek 552
Cdd:COG3096 517 LRAQLAELEQRLRQQQNA-ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSE-----LRQQL--- 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 553 ekETLKAELQKLRQQALEtkhFIEKQEAEERkllriIAEADGERLRQKKELDQVISERDILGSQLVRRNDELALLYEKIK 632
Cdd:COG3096 588 --EQLRARIKELAARAPA---WLAAQDALER-----LREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALE 657
|
410
....*....|....*..
gi 56961680 633 IQQSVLNKGESQYNQRL 649
Cdd:COG3096 658 SQIERLSQPGGAEDPRL 674
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-455 |
6.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 190 KEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNER 269
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 270 AAKELEQFQMRNAKLQQENEqhSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQ 349
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 350 HKETLKNQIVGLEREVEASKKQ-AELDRKAMDELLRERDIlnknmlkavnatqkqtdlvklhEQAKRNLEGEIQNYKDEA 428
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKkEELEEELEELEAALRDL----------------------ESRLGDLKKERDELEAQL 898
|
250 260
....*....|....*....|....*..
gi 56961680 429 QKQRKIIFHLEKERDRYINQASDLTQK 455
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAK 925
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
89-582 |
7.56e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 89 QTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIRDLLRFKEEVTKERDQLLSE 168
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 169 VVKLRESLAQT----------TEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLEKELKQIQADMDSRQTE 238
Cdd:PRK02224 292 EEERDDLLAEAglddadaeavEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 239 IKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQE-NEQHSLVCE-----QLSQENQQKALELKA- 311
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREErDELREREAEleatlRTARERVEEAEALLEa 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 312 ---------------------KEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKaEVEQHKETLKNQIVGLEREVEASKK 370
Cdd:PRK02224 452 gkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 371 QAELDRKAMDELLRERDILNKNMLKAVNATQKQTDLVKLHEQAKRNLEGEIQNYKDEAQKQRKIIFHLEkERDRYINQAS 450
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 451 DLTQKVLMNMEDIKVRETQIFDYRKKIAESEIKLkqQQNLYEAVRSDRnlysKNLVEAQDEITDmkrKLKIMIHQVDELK 530
Cdd:PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEF--DEARIEEAREDK----ERAEEYLEQVEE---KLDELREERDDLQ 680
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 56961680 531 EDISAKESALvklhleqqrieKEKETLKAELQKL--RQQALETKHfiekQEAEE 582
Cdd:PRK02224 681 AEIGAVENEL-----------EELEELRERREALenRVEALEALY----DEAEE 719
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
228-572 |
8.04e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 8.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 228 IQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKAL 307
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 308 ELKAKEEEVHQMRLDIGKLNKIREQIHKKLhhtedqkaeveqhkETLKNQIVGLEREVEASKKQAELDRKAMDELLRErd 387
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQL--------------KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE-- 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 388 ilnknmlkavnatqkqtdlvklheqaKRNLEGEIQNYKDEAQKQRKIIFHLEKERDRYINQASDLTQKVLMNMEDIKVRE 467
Cdd:TIGR04523 505 --------------------------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961680 468 tqifdYRKKIAESEIKLKQQQNLYEAVRSDRNLYSKNLVEAQDEITDMKRKLKIMIHQVDELKEDISAKESALVKLHLEQ 547
Cdd:TIGR04523 559 -----LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
330 340
....*....|....*....|....*
gi 56961680 548 QRIEKEKETLKAELQKLRQQALETK 572
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| |
