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Conserved domains on  [gi|111185930|ref|NP_001013391|]
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transmembrane protease serine 13 [Mus musculus]

Protein Classification

SRCR_2 and Tryp_SPc domain-containing protein( domain architecture ID 12173813)

SRCR_2 and Tryp_SPc domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
306-535 1.60e-99

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


:

Pssm-ID: 214473 [Multi-domain]  Cd Length: 229  Bit Score: 300.36  E-value: 1.60e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   306 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 382
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDEKTSPFLREVQVNLIDFKKCN 462
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR 157
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   463 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCeQNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:smart00020 158 RAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
212-302 4.82e-30

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


:

Pssm-ID: 434754  Cd Length: 99  Bit Score: 113.19  E-value: 4.82e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  212 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 283
Cdd:pfam15494   1 GPNFLLQVYSSARPSWLPVCSDDWNPAYGRQACQQLGYLRLTYHKSVNLSDISGNSsqefmklNSSSLNTDLYEALQpRD 80
                          90
                  ....*....|....*....
gi 111185930  284 QCPSRRYVSLQCSHCGLRA 302
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
PHA03378 super family cl33729
EBNA-3B; Provisional
6-122 1.88e-12

EBNA-3B; Provisional


The actual alignment was detected with superfamily member PHA03378:

Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 70.10  E-value: 1.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111185930  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
306-535 1.60e-99

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473 [Multi-domain]  Cd Length: 229  Bit Score: 300.36  E-value: 1.60e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   306 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 382
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDEKTSPFLREVQVNLIDFKKCN 462
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR 157
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   463 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCeQNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:smart00020 158 RAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
307-535 4.43e-97

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 294.18  E-value: 4.43e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 307 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPE---AASISQII 382
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGgRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDeKTSPFLREVQVNLIDFKKCN 462
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGG-PLPDVLQEVNVPIVSNAECK 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930 463 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:cd00190  157 RAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWI 229
Trypsin pfam00089
Trypsin;
307-535 5.11e-70

Trypsin;


Pssm-ID: 395042 [Multi-domain]  Cd Length: 219  Bit Score: 223.86  E-value: 5.11e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  307 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtreKLLEGWKVYAGTSNLHQLPEA---ASISQII 382
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSgKHFCGGSLISENWVLTAAHCV-----SGASDVKVVLGAHNIVLREGGeqkFDVEKII 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDEKTSpfLREVQVNLIDFKKCN 462
Cdd:pfam00089  76 VHPNYNPDTLDNDIALLKLESPVTLGDTVRPICLPDASSDLPVGTTCTVSGWGNTKTLGPSDT--LQEVTVPVVSRETCR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930  463 DYlvYDSYLTPRMMCAGDlrGGRDSCQGDSGGPLVCEQNnrwYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:pfam00089 154 SA--YGGTVTDTMICAGA--GGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 219
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
212-302 4.82e-30

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


Pssm-ID: 434754  Cd Length: 99  Bit Score: 113.19  E-value: 4.82e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  212 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 283
Cdd:pfam15494   1 GPNFLLQVYSSARPSWLPVCSDDWNPAYGRQACQQLGYLRLTYHKSVNLSDISGNSsqefmklNSSSLNTDLYEALQpRD 80
                          90
                  ....*....|....*....
gi 111185930  284 QCPSRRYVSLQCSHCGLRA 302
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
304-541 3.56e-26

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227927 [Multi-domain]  Cd Length: 413  Bit Score: 110.74  E-value: 3.56e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 304 TGRIVGGALTSESKWPWQVSLhfgTTHI--------CGGTLIDAQWVLTAAHCFfvtrekllEGWKVYAGTSNLhQLPEA 375
Cdd:COG5640   30 SSRIIGGSNANAGEYPSLVAL---VDRIsdyvsgtfCGGSKLGGRYVLTAAHCA--------DASSPISSDVNR-VVVDL 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 376 ASISQ--------IIINGNYTDEQDDYDIALIRLSKPLTLSAH-IHPACLPmhgQTFGLNETCW----ITGFGKTKETD- 441
Cdd:COG5640   98 NDSSQaerghvrtIYVHEFYSPGNLGNDIAVLELARAASLPRVkITSFDAS---DTFLNSVTTVspmtNGTFGVTTPSDv 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 442 EKTSP---FLREVQVNLIDFKKCNDYLVY----DSYLTPRMMCAGdlRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGT 514
Cdd:COG5640  175 PRSSPkgtILHEVAVLFVPLSTCAQYKGCanasDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGRVQRGVVSWGD 252
                        250       260
                 ....*....|....*....|....*...
gi 111185930 515 G-CGQKNKPGVYTKVTEVLPWIYRKMES 541
Cdd:COG5640  253 GgCGGTLIPGVYTNVSNYQDWIAAMTNG 280
PHA03378 PHA03378
EBNA-3B; Provisional
6-122 1.88e-12

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 70.10  E-value: 1.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111185930  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
224-297 1.52e-07

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 49.65  E-value: 1.52e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930   224 SGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAH-RDITSSFLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 297
Cdd:smart00202  19 NGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYfGPGSGPIWLDNVRCSGTEaSL--SDCPHSGWGSHNCSH 92
SPATA3 pfam15662
Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed ...
8-77 2.61e-05

Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed significantly in testis and faintly in epididymis in the ten tissues of testis, ovary, spleen, kidney, lung, heart, brain, epididymis, liver and skeletal muscle in mouse. Members are not expressed in the eight other tissues. This suggests that SPATA3 plays potential roles in spermatogenesis cell apoptosis or spermatogenesis.


Pssm-ID: 434837 [Multi-domain]  Cd Length: 190  Bit Score: 44.96  E-value: 2.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930    8 NSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARAS--PARASLARAPP 77
Cdd:pfam15662  25 ESTPQQPSSESAPQQPSPESTPQQPSPS-TTPQPSSESTPQQPASQALPAPEIRHSSRCllPPDPNTKAAPP 95
FimV COG3170
Tfp pilus assembly protein FimV [Cell motility, Extracellular structures];
11-66 2.01e-04

Tfp pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 225711 [Multi-domain]  Cd Length: 755  Bit Score: 44.13  E-value: 2.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  11 PARTPPQA-SPARTSPARAPPQASPARTPPQAS-PTRTPpqaSPARAPPPQASPARAS 66
Cdd:COG3170  142 PGYSPKSAlSAEPSHPVPAPAAASAPPPPPRAArPVRQP---APAPAAPGDTYTVRSG 196
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
14-68 4.15e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 40.05  E-value: 4.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930   14 TPPQASPARTSPARAP--PQASPARTPPQ----ASPTRTPPQASPARAPPPQA-SPARASPA 68
Cdd:TIGR01645 344 NKAVVSSAKKEAEEVPplPQAAPAVVKPGpmeiPTPVPPPGLAIPSLVAPPGLvAPTEINPS 405
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
306-535 1.60e-99

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473 [Multi-domain]  Cd Length: 229  Bit Score: 300.36  E-value: 1.60e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   306 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 382
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDEKTSPFLREVQVNLIDFKKCN 462
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR 157
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   463 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCeQNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:smart00020 158 RAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
307-535 4.43e-97

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 294.18  E-value: 4.43e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 307 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPE---AASISQII 382
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGgRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDeKTSPFLREVQVNLIDFKKCN 462
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGG-PLPDVLQEVNVPIVSNAECK 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930 463 DYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:cd00190  157 RAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWI 229
Trypsin pfam00089
Trypsin;
307-535 5.11e-70

Trypsin;


Pssm-ID: 395042 [Multi-domain]  Cd Length: 219  Bit Score: 223.86  E-value: 5.11e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  307 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtreKLLEGWKVYAGTSNLHQLPEA---ASISQII 382
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSgKHFCGGSLISENWVLTAAHCV-----SGASDVKVVLGAHNIVLREGGeqkFDVEKII 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  383 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETDEKTSpfLREVQVNLIDFKKCN 462
Cdd:pfam00089  76 VHPNYNPDTLDNDIALLKLESPVTLGDTVRPICLPDASSDLPVGTTCTVSGWGNTKTLGPSDT--LQEVTVPVVSRETCR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930  463 DYlvYDSYLTPRMMCAGDlrGGRDSCQGDSGGPLVCEQNnrwYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 535
Cdd:pfam00089 154 SA--YGGTVTDTMICAGA--GGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 219
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
212-302 4.82e-30

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


Pssm-ID: 434754  Cd Length: 99  Bit Score: 113.19  E-value: 4.82e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  212 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 283
Cdd:pfam15494   1 GPNFLLQVYSSARPSWLPVCSDDWNPAYGRQACQQLGYLRLTYHKSVNLSDISGNSsqefmklNSSSLNTDLYEALQpRD 80
                          90
                  ....*....|....*....
gi 111185930  284 QCPSRRYVSLQCSHCGLRA 302
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
304-541 3.56e-26

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227927 [Multi-domain]  Cd Length: 413  Bit Score: 110.74  E-value: 3.56e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 304 TGRIVGGALTSESKWPWQVSLhfgTTHI--------CGGTLIDAQWVLTAAHCFfvtrekllEGWKVYAGTSNLhQLPEA 375
Cdd:COG5640   30 SSRIIGGSNANAGEYPSLVAL---VDRIsdyvsgtfCGGSKLGGRYVLTAAHCA--------DASSPISSDVNR-VVVDL 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 376 ASISQ--------IIINGNYTDEQDDYDIALIRLSKPLTLSAH-IHPACLPmhgQTFGLNETCW----ITGFGKTKETD- 441
Cdd:COG5640   98 NDSSQaerghvrtIYVHEFYSPGNLGNDIAVLELARAASLPRVkITSFDAS---DTFLNSVTTVspmtNGTFGVTTPSDv 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930 442 EKTSP---FLREVQVNLIDFKKCNDYLVY----DSYLTPRMMCAGdlRGGRDSCQGDSGGPLVCEQNNRWYLAGVTSWGT 514
Cdd:COG5640  175 PRSSPkgtILHEVAVLFVPLSTCAQYKGCanasDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGRVQRGVVSWGD 252
                        250       260
                 ....*....|....*....|....*...
gi 111185930 515 G-CGQKNKPGVYTKVTEVLPWIYRKMES 541
Cdd:COG5640  253 GgCGGTLIPGVYTNVSNYQDWIAAMTNG 280
PHA03378 PHA03378
EBNA-3B; Provisional
6-122 1.88e-12

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 70.10  E-value: 1.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111185930  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
PHA03378 PHA03378
EBNA-3B; Provisional
11-131 5.25e-12

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 68.56  E-value: 5.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  11 PARTPPQASPARTSPARAPPQASPART----PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPSRSSSGRS 85
Cdd:PHA03378 655 PQVEITPYKPTWTQIGHIPYQPSPTGAntmlPIQWAPGTMqPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA 734
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 111185930  86 SSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03378 735 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPP 780
PHA03378 PHA03378
EBNA-3B; Provisional
7-136 6.74e-12

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 68.56  E-value: 6.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARA-PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrSSSG 83
Cdd:PHA03378 693 TMQPPPRAPTPMRPPAAPPGRAqRPAAATGRArPPAAAPGRArPPAAAPGRARPPAAAPGRARPPAAAPGRARP--PAAA 770
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111185930  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASParsAPATRATRESPGLSFP 136
Cdd:PHA03378 771 PGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGP---TSMQLMPRAAPGQQGP 820
PHA03378 PHA03378
EBNA-3B; Provisional
9-131 2.02e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 67.01  E-value: 2.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPPQASPARTSPARaPPQASPART-PPQASPTR-TPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSS 86
Cdd:PHA03378 667 TQIGHIPYQPSPTGANTML-PIQWAPGTMqPPPRAPTPmRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR 745
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 111185930  87 SARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03378 746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790
PHA03378 PHA03378
EBNA-3B; Provisional
7-129 2.78e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 66.24  E-value: 2.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARtPPQASPARTSPARA------PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPS 78
Cdd:PHA03378 699 RAPTPMR-PPAAPPGRAQRPAAatgrarPPAAAPGRArPPAAAPGRArPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ 777
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 111185930  79 RSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPiRASPARSAPATRATRE 129
Cdd:PHA03378 778 PPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP-RAAPGQQGPTKQILRQ 827
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
4-131 5.02e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 65.28  E-value: 5.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASParAPPPQASPARASPARASLARAppsrssSG 83
Cdd:PRK12323 367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAA--ARAVAAAPARRSPAPEALAAA------RQ 438
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 111185930  84 RSSSARSASTTSSPTRVylvrATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK12323 439 ASARGPGGAPAPAPAPA----AAPAAAARPAAAGPRPVAAAAAAAPAR 482
PHA03378 PHA03378
EBNA-3B; Provisional
12-136 3.54e-10

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 62.78  E-value: 3.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  12 ARTPPQASPARTSPARA------PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARAslARAPPSRSSSG 83
Cdd:PHA03378 713 RAQRPAAATGRARPPAAapgrarPPAAAPGRArPPAAAPGRArPPAAAPGRARPPAAAPGAPTPQPP--PQAPPAPQQRP 790
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111185930  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03378 791 RGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKP 843
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
3-147 3.60e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.42  E-value: 3.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   3 RGSHRNSSPARTPPQASPARTSPARAPPqasPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPV---AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930  83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA-TRATRESPGLsfpkfSWQETQRQL 147
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAaARLTPTEEGD-----VWHATVQQL 504
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
3-151 6.41e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 61.82  E-value: 6.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTrTPPQASPARAPPPQAS---------PARASPARASLA 73
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA-APARAAPAAAPAPADDdpppweelpPEFASPAPAQPD 515
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  74 RAPPSRSSSGRSSSARSASTTSSPTRVylVRATPVGAVPIRASPARSAPATRATRESPGLSfPKF--SWQETQRQLPLIG 151
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLA--PAPAAAPAPRAAAATEPVVAPRPPRASASGLP-DMFdgDWPALAARLPVRG 592
PHA03247 PHA03247
large tegument protein UL36; Provisional
9-148 7.98e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.80  E-value: 7.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    9 SSPARTPPQASPARTSPARAPPQASPARTPPQA----SPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGR 84
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930   85 SSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP---GLSFPKFSWQETQRQLP 148
Cdd:PHA03247 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPpvrRLARPAVSRSTESFALP 2901
PHA03378 PHA03378
EBNA-3B; Provisional
7-132 1.55e-08

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 57.38  E-value: 1.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARA-PPQASPART-PPQASPTRT-PPQASPARA---PPPQASPA-----RASPARASLARA 75
Cdd:PHA03378 723 RARPPAAAPGRARPPAAAPGRArPPAAAPGRArPPAAAPGRArPPAAAPGAPtpqPPPQAPPApqqrpRGAPTPQPPPQA 802
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930  76 PPSRSSSGRSSSARSASTTSSPTRVYLVRATPVG--AVPIRASPARSAPAtrATRESPG 132
Cdd:PHA03378 803 GPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGrpSLKKPAALERQAAA--GPTPSPG 859
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
4-130 6.86e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.38  E-value: 6.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111185930  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PRK07764 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
PHA03247 PHA03247
large tegument protein UL36; Provisional
5-124 8.38e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.33  E-value: 8.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    5 SHRNSSPART-PPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PHA03247 2727 AARQASPALPaAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 111185930   84 RSSSARSASTTSSPTrvylvrATPVGAVPIRASPARSAPAT 124
Cdd:PHA03247 2807 PPAAVLAPAAALPPA------ASPAGPLPPPTSAQPTAPPP 2841
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
3-123 1.05e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 1.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASptRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP--APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111185930  83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA 123
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
PHA02682 PHA02682
ORF080 virion core protein; Provisional
10-77 1.36e-07

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 53.33  E-value: 1.36e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930  10 SP-ARTPPQASPARTSPARAPPQASPARTPPQASPTrTPPQASPArAPPPQASPARASPARA---SLARAPP 77
Cdd:PHA02682  80 SPlAPSPACAAPAPACPACAPAAPAPAVTCPAPAPA-CPPATAPT-CPPPAVCPAPARPAPAcppSTRQCPP 149
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
224-297 1.52e-07

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 49.65  E-value: 1.52e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930   224 SGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAH-RDITSSFLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 297
Cdd:smart00202  19 NGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYfGPGSGPIWLDNVRCSGTEaSL--SDCPHSGWGSHNCSH 92
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
7-124 3.12e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.45  E-value: 3.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQ-ASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRS 85
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAApAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 111185930  86 SSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPAT 124
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
8-77 3.76e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.97  E-value: 3.76e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
11-136 3.78e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.93  E-value: 3.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  11 PARTPP-QASPARTSPARAP-PQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07003 427 PAAPAPpATADRGDDAADGDaPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA 506
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 111185930  89 RSASttssptrvylvrATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 507 VPDA------------RAPAAASREDAPAAAAPPAPEARPPTPAAAAP 542
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
11-77 3.95e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 52.86  E-value: 3.95e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK14971 393 SAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459
PHA03247 PHA03247
large tegument protein UL36; Provisional
12-131 4.14e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 4.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   12 ARTPPQASPAR--TSPARAPPQASPARTP-PQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PHA03247 2655 DPAPGRVSRPRraRRLGRAAQASSPPQRPrRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 111185930   89 RSASTTSSPTRVylVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03247 2735 LPAAPAPPAVPA--GPATPGGPARPARPPTTAGPPAPAPPAAP 2775
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
29-136 6.16e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 6.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  29 PPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSSPTRVylVRATPV 108
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAA--PAAAPA 443
                         90       100       110
                 ....*....|....*....|....*....|
gi 111185930 109 GAVPIRASPARSAPATRAT--RESPGLSFP 136
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIpvRVAPEPAVA 473
PHA03247 PHA03247
large tegument protein UL36; Provisional
4-140 9.08e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 9.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    4 GSHRNSSPARTPPQASPARTSP-----ARAPPQASP---ARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PHA03247 2860 GDVRRRPPSRSPAAKPAAPARPpvrrlARPAVSRSTesfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   76 PPSRSSSGRSSSARSASTTSS--------PTRVYLVRATPVGAVPIRASPARSAPaTRATRESPGLSfpkfSW 140
Cdd:PHA03247 2940 QPPLAPTTDPAGAGEPSGAVPqpwlgalvPGRVAVPRFRVPQPAPSREAPASSTP-PLTGHSLSRVS----SW 3007
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
16-77 1.63e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.04  E-value: 1.63e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930   16 PQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
4-131 2.22e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 2.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   4 GSHRNSSPARTPPQASPARTSPAraPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PRK07764 654 PKHVAVPDASDGGDGWPAKAGGA--APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 111185930  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 732 SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
225-297 2.32e-06

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 425734 [Multi-domain]  Cd Length: 97  Bit Score: 46.19  E-value: 2.32e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930  225 GEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSS--FLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 297
Cdd:pfam00530  15 GSWGTVCDDGWDLRDANVVCRQLGCGGAVSASSGASFFGPGTgpIWLDDVRCSGNEtSL--WQCPHRPWGNHNCSH 88
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
17-131 2.40e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 2.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  17 QASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSS 96
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 111185930  97 PTrvylvrATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 466 PA------PAPAAAPEPTAAPAPAPPAAPAPAAAP 494
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
10-77 3.75e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 49.74  E-value: 3.75e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  10 SPARTPPQASPARTSPARAPPQASpARTPPQASPTRtPPQASPARAPPPqaSPARASPARASLARAPP 77
Cdd:PRK14965 381 APAPPSAAWGAPTPAAPAAPPPAA-APPVPPAAPAR-PAAARPAPAPAP--PAAAAPPARSADPAAAA 444
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
12-136 5.68e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.08  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  12 ARTPPQASPARTSPARAPPqASPArtPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSsgrsssarsa 91
Cdd:PRK07003 409 ALAPKAAAAAAATRAEAPP-AAPA--PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG---------- 475
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 111185930  92 sttssptrvylVRATPVGAVPiraSPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 476 -----------SASAPASDAP---PDAAFEPAPRAAAPSAATPAA 506
PHA03247 PHA03247
large tegument protein UL36; Provisional
3-136 6.25e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 6.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    3 RGSHRNSSPARTP-PQASPARTSPARAPPQASP----ARTPPQ-ASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PHA03247 2662 SRPRRARRLGRAAqASSPPQRPRRRAARPTVGSltslADPPPPpPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111185930   77 PSRSSSGRS----SSARSASTTSSPTRVYLVRAtPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2742 PAVPAGPATpggpARPARPPTTAGPPAPAPPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
8-148 8.20e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 48.65  E-value: 8.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   8 NSSPARTPPQASPARTSPARapPQASPArTPPQASPTRTPPQASPARAPPPQASPArASPARASLARAPPSRSSSGRSss 87
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVR--PTPAPS-TRPKAAAAANIPPKEPVRETATPPPVP-PRPVAPPVPHTPESAPKLTRA-- 434
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930  88 arsasttssptrvylvrATPVGAVPIRASPARSAPATRATRESPG-LSFPKFSWQETQRQLP 148
Cdd:PRK14950 435 -----------------AIPVDEKPKYTPPAPPKEEEKALIADGDvLEQLEAIWKQILRDVP 479
PHA02682 PHA02682
ORF080 virion core protein; Provisional
7-77 9.06e-06

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 47.55  E-value: 9.06e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930   7 RNSSPARTPPQASPARTSPARAPPqasparTPPQASPTRTPPQASPARAPPPQASParasPARASLARAPP 77
Cdd:PHA02682  92 APACPACAPAAPAPAVTCPAPAPA------CPPATAPTCPPPAVCPAPARPAPACP----PSTRQCPPAPP 152
PHA03247 PHA03247
large tegument protein UL36; Provisional
2-77 9.09e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 9.09e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930    2 DRGSHRNSSPARTPPQASPARTSPARAPpqASPARTPPQASPTRTPPQASPARAP-PPQASPAR--ASPARASLARAPP 77
Cdd:PHA03247 2604 DRGDPRGPAPPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPaPGRVSRPRraRRLGRAAQASSPP 2680
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
4-131 1.01e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 1.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   4 GSHRNSSPARTPPQASPARTSPARAppQASPARTPPQASPTR--TPPQASPARAPPPQASPARASPARASLARAPPSRSS 81
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGA--SAVPAVTAVTGAAGAalAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111185930  82 SGRSSSARSASTTssPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07003 447 APVPAKANARASA--DSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
1-132 1.06e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.44  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   1 MDRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASP-TRTPPQASPARAPPPQASPARASPARASLARAPPSR 79
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPaATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111185930  80 SSSGRSSSARSASTTSSPTRVyLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPA-PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
PHA03247 PHA03247
large tegument protein UL36; Provisional
11-132 1.81e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   11 PARTPPQASPARTSPARAPPQASP--------AR-----TPPQASPTRTP------PQASPARAPPPQASPARASPARAS 71
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPRPAPrpsepavtSRarrpdAPPQSARPRAPvddrgdPRGPAPPSPLPPDTHAPDPPPPSP 2631
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930   72 LARA-PPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PHA03247 2632 SPAAnEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
9-77 2.29e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.17  E-value: 2.29e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930   9 SSPARTPPQASPARTSPARAP---PQASPARTPPQASPTRTPPQASPARAPPPQASPA---RASPARASLARAPP 77
Cdd:PRK07994 387 PTAAVAPPQAPAVPPPPASAPqqaPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAaasRARPVNSALERLAS 461
SPATA3 pfam15662
Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed ...
8-77 2.61e-05

Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed significantly in testis and faintly in epididymis in the ten tissues of testis, ovary, spleen, kidney, lung, heart, brain, epididymis, liver and skeletal muscle in mouse. Members are not expressed in the eight other tissues. This suggests that SPATA3 plays potential roles in spermatogenesis cell apoptosis or spermatogenesis.


Pssm-ID: 434837 [Multi-domain]  Cd Length: 190  Bit Score: 44.96  E-value: 2.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930    8 NSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARAS--PARASLARAPP 77
Cdd:pfam15662  25 ESTPQQPSSESAPQQPSPESTPQQPSPS-TTPQPSSESTPQQPASQALPAPEIRHSSRCllPPDPNTKAAPP 95
PHA03247 PHA03247
large tegument protein UL36; Provisional
9-99 3.38e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 3.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    9 SSPARTPPQASPARTSPARAPPQASP-ARTP------------PQASPTRTPPQAsPARAPPPQASPARASPARASLARA 75
Cdd:PHA03247  369 SAGRHHPKRASLPTRKRRSARHAATPfARGPggddqtrpaapvPASVPTPAPTPV-PASAPPPPATPLPSAEPGSDDGPA 447
                          90       100
                  ....*....|....*....|....
gi 111185930   76 PPSRSSSGRSSSARSASTTSSPTR 99
Cdd:PHA03247  448 PPPERQPPAPATEPAPDDPDDATR 471
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
10-62 4.02e-05

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 45.60  E-value: 4.02e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930  10 SPARTPPQASPARTSPArAPPQASPARTPPQASPTRTPPQASPARAP----PPQASP 62
Cdd:PLN02983 148 APVVMMQPPPPHAMPPA-SPPAAQPAPSAPASSPPPTPASPPPAKAPksshPPLKSP 203
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
2-77 4.58e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.25  E-value: 4.58e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930   2 DRGSHRNSSPARTPPQASPARTSPAR--APPQASPARTPPQASPTRTPPQASPARAPP-PQASPARASPARASLARAPP 77
Cdd:PRK14951 400 APAPAAAPAAAASAPAAPPAAAPPAPvaAPAAAAPAAAPAAAPAAVALAPAPPAQAAPeTVAIPVRVAPEPAVASAAPA 478
flhF PRK06995
flagellar biosynthesis protein FlhF;
8-148 5.16e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 45.73  E-value: 5.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   8 NSSPARTPPQASPARTSPARAPPQaspARTPPQASPTRtpPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PRK06995  73 VSRPAAPAAEPAPWLVEHAKRLTA---QREQLVARAAA--PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930  88 ARSASTTSSPTRVYLVRATPVGAvPIRasparsapATRATRESpglSFPKFSWQETQRQLP 148
Cdd:PRK06995 148 AAAAVADAVKARIERIVNDTVMQ-ELR--------SLRGMLEE---QLASLAWGERQRRDP 196
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
9-131 5.34e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 5.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPArtPPQASPTRTPPQASPAraPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQA--PAVPPPPASAPQQAPA--VPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 111185930  89 RsasttssptrvylVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07994 446 A-------------SRARPVNSALERLASVRPAPSALEKAPAK 475
PRK10905 PRK10905
cell division protein DamX; Validated
3-76 6.34e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 45.31  E-value: 6.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   3 RGSHRNSSPARTPPQASPARTSPARA-------PPQASPARTP--PQASPTRTPPQASPARAPPPQASPARASPARASLA 73
Cdd:PRK10905 134 RNGNASRQTAKTQTAERPATTRPARKqaviepkKPQATAKTEPkpVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTA 213

                 ...
gi 111185930  74 RAP 76
Cdd:PRK10905 214 PVQ 216
Treacle pfam03546
Treacher Collins syndrome protein Treacle;
2-76 6.65e-05

Treacher Collins syndrome protein Treacle;


Pssm-ID: 427362 [Multi-domain]  Cd Length: 480  Bit Score: 45.41  E-value: 6.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    2 DRGSHRNSSPARTPPQASPARTSP----ARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARAS---------PA 68
Cdd:pfam03546  31 DSDSEEETPAAKTPLQAKPSGKTPqvraASAPAKESPRKGAPPVPPGKTGPAAAQAQAGKPEEDSESSSeesdsegetPA 110

                  ....*...
gi 111185930   69 RASLARAP 76
Cdd:pfam03546 111 AQTLTTSP 118
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2-76 6.81e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.93  E-value: 6.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    2 DRGSHRNSSP--ARTPPQASPARTSPARAPPQ----ASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PHA03307  291 PRERSPSPSPssPGSGPAPSSPRASSSSSSSResssSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370

                  .
gi 111185930   76 P 76
Cdd:PHA03307  371 P 371
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
9-146 7.53e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 7.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  89 RSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFPKFSWQETQRQ 146
Cdd:PRK07764 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2-132 7.55e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.55  E-value: 7.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSS 81
Cdd:PHA03307  114 PDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP 193
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 111185930   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPIR--ASPARSAPATRATRESPG 132
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRsaADDAGASSSDSSSSESSG 246
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
10-75 8.14e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 45.50  E-value: 8.14e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930  10 SPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PRK14965 392 PTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRAFVAFV 457
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
3-77 8.43e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.55  E-value: 8.43e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930    3 RGSHRNSSPARTPPQASPArtSPARAPPQASPARTPPQASPTRTPPQASPARAPPpqaSPARASPARASLARAPP 77
Cdd:PHA03307  345 PSPSRSPSPSRPPPPADPS--SPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGR---ARRRDATGRFPAGRPRP 414
PHA03247 PHA03247
large tegument protein UL36; Provisional
3-136 1.07e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    3 RGSHRNSSPART--------PPQASPART-----SPARAPPQASPArtPPQASPTRTPPQASPARA--PPPQASPARASP 67
Cdd:PHA03247 2572 RPAPRPSEPAVTsrarrpdaPPQSARPRApvddrGDPRGPAPPSPL--PPDTHAPDPPPPSPSPAAnePDPHPPPTVPPP 2649
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   68 ARASLARAPPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPI----RASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtslaDPPPPPPTPEPAPHALVSATPLP 2722
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
9-136 1.19e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    9 SSPARTPPQASPARTS-----PARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PHA03307   74 GPGTEAPANESRSTPTwslstLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 111185930   84 RSSSARsasttssptrvylvRATPVGAVPIR--ASPARSAPATRATRESPGLSFP 136
Cdd:PHA03307  154 AAGASP--------------AAVASDAASSRqaALPLSSPEETARAPSSPPAEPP 194
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
7-131 1.52e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARASP--ARASLARAPPSRSSSGR 84
Cdd:PRK07764 606 SGPPEEAARPAAPAAPAAPAAPAPAGAAA-APAEASAAPAPGVAAPEHHPKHVAVPDASDGgdGWPAKAGGAAPAAPPPA 684
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111185930  85 SSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
10-77 1.54e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.38  E-value: 1.54e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930  10 SPARTPPQ-ASPARTSPArAPPQAS----PARTPPQASPTRTPPQASPARAP---PPQASPARASPARASLARAPP 77
Cdd:PRK14971 370 SGGRGPKQhIKPVFTQPA-AAPQPSaaaaASPSPSQSSAAAQPSAPQSATQPagtPPTVSVDPPAAVPVNPPSTAP 444
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
1-75 1.58e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 44.35  E-value: 1.58e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930   1 MDRGSHRNSSPARTPPQ-ASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PRK14965 377 LERGAPAPPSAAWGAPTpAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
8-77 1.89e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 1.89e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPAR-APPPQASPARASPARASLARAPP 77
Cdd:PRK07003 473 DSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREdAPAAAAPPAPEARPPTPAAAAPA 543
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
19-77 1.93e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.50  E-value: 1.93e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930   19 SPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95
FimV COG3170
Tfp pilus assembly protein FimV [Cell motility, Extracellular structures];
11-66 2.01e-04

Tfp pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 225711 [Multi-domain]  Cd Length: 755  Bit Score: 44.13  E-value: 2.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  11 PARTPPQA-SPARTSPARAPPQASPARTPPQAS-PTRTPpqaSPARAPPPQASPARAS 66
Cdd:COG3170  142 PGYSPKSAlSAEPSHPVPAPAAASAPPPPPRAArPVRQP---APAPAAPGDTYTVRSG 196
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
27-131 2.09e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 2.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  27 RAPPQASPARTPPQASPTRTPPQASPArapPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSSPTRVYLVRAT 106
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAA---PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459
                         90       100
                 ....*....|....*....|....*
gi 111185930 107 PVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAP 484
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
10-136 2.63e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   10 SPARTPPQAS-PARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PHA03307  164 SDAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSE 243
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 111185930   89 RSASTTSSPTRVYLVRATPVGAVPIRASPARS-APATRATRESPGLSFP 136
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPR 292
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
10-67 2.66e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 427171 [Multi-domain]  Cd Length: 991  Bit Score: 43.99  E-value: 2.66e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   10 SPARTPPQASPARTSPARAPpqaspARTPPQASPTrTPPQASPARAPPPQASPARASP 67
Cdd:pfam03154 176 AQSGAASPPSPPPPGTTQAA-----TAGPTPSAPS-VPPQGSPATSQPPNQTQSTAAP 227
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
15-77 2.66e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 42.90  E-value: 2.66e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930  15 PPQASPARTSPARAPPQASPArTPPQASPtrtppqASPARAPPPQASPARASPARASLARAPP 77
Cdd:PLN02983 144 PPPPAPVVMMQPPPPHAMPPA-SPPAAQP------APSAPASSPPPTPASPPPAKAPKSSHPP 199
PHA03247 PHA03247
large tegument protein UL36; Provisional
7-131 3.18e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 3.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    7 RNSSPARTP-PQASPARTSP----ARAPPQASPARTPPQ----ASPTRTPPQASPARAPPPQASPA-RASPARASLARAP 76
Cdd:PHA03247 2675 QASSPPQRPrRRAARPTVGSltslADPPPPPPTPEPAPHalvsATPLPPGPAAARQASPALPAAPApPAVPAGPATPGGP 2754
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930   77 PSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRAS----PARSAPATRATRESP 131
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslPSPWDPADPPAAVLA 2813
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
12-77 3.37e-04

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 42.61  E-value: 3.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   12 ARTPPQASPARTSPARAPPQASPARTPPqASPTRTPPQASP--ARAPPPQASPARASPARASLARAPP 77
Cdd:pfam07174  37 AHADPEPAPPPPSTATAPPAPPPPPPAP-AAPAPPPPPAAPnaPNAPPPPADPNAPPPPPADPNAPPP 103
PHA03377 PHA03377
EBNA-3C; Provisional
14-146 3.63e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 43.50  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   14 TPPQASPARtspaRAPPQASPartPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSAST 93
Cdd:PHA03377  551 TPPKVSPSD----RGPPKASP---PVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPR 623
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 111185930   94 TSSPTRVYLVRATPVGAVPIRASPaRSAPATRATRESPGLSFPKFSWQETQRQ 146
Cdd:PHA03377  624 DMAPSVVRMFLRERLLEQSTGPKP-KSFWEMRAGRDGSGIQQEPSSRRQPATQ 675
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
11-68 3.72e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.17  E-value: 3.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPA 68
Cdd:PRK06975 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
14-77 4.43e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 43.03  E-value: 4.43e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111185930  14 TPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK14948 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
PHA03377 PHA03377
EBNA-3C; Provisional
2-67 4.86e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 43.12  E-value: 4.86e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930    2 DRGSHRNSSPARTPPQASP-ARTSPARAPPQASPARTPP--QASPTRTPPQASPARAPPPQASPARASP 67
Cdd:PHA03377  559 DRGPPKASPPVMAPPSTGPrVMATPSTGPRDMAPPSTGPrqQAKCKDGPPASGPHEKQPPSSAPRDMAP 627
PRK12757 PRK12757
cell division protein FtsN; Provisional
7-73 5.36e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 5.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTP---PQASPARAPPPQASPARAS-------------PA-- 68
Cdd:PRK12757 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQpaaPVTQAVEAPKVEAEKEKEQrwmvqcgsfkgteQAes 200

                 ....*.
gi 111185930  69 -RASLA 73
Cdd:PRK12757 201 vRAQLA 206
PHA03269 PHA03269
envelope glycoprotein C; Provisional
7-154 5.41e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 5.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTrtpPQASpaRAPPPQASPARASPARASLARAPPSRSSSgrss 86
Cdd:PHA03269  38 QKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT---PAAS--EKFDPAPAPHQAASRAPDPAVAPQLAAAP---- 108
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930  87 sarsasttssptrvylvraTPVGAVPIRASP-ARSAPATRATRESPGLSFPKFSWQETQ------RQLPLIGCVI 154
Cdd:PHA03269 109 -------------------KPDAAEAFTSAAqAHEAPADAGTSAASKKPDPAAHTQHSPppfaytRSMEHIACTH 164
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
9-62 5.50e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 42.13  E-value: 5.50e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111185930   9 SSPARTPPqASPARTSPARAPPQASPARTPPQASPTRT-----PPQASPA-----RAPPPQASP 62
Cdd:PLN02983 156 PPPHAMPP-ASPPAAQPAPSAPASSPPPTPASPPPAKApksshPPLKSPMagtfyRSPAPGEPP 218
Pro-rich pfam15240
Proline-rich; This family includes several eukaryotic proline-rich proteins.
6-77 5.54e-04

Proline-rich; This family includes several eukaryotic proline-rich proteins.


Pssm-ID: 434562 [Multi-domain]  Cd Length: 167  Bit Score: 40.74  E-value: 5.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    6 HRNSSPARTPPQaSPARTSPARAPPQASPARTPPQA--SPTRTPPQASPAR-------APPPQASPARASPARASLARAP 76
Cdd:pfam15240  46 PQGPPPGGFPPR-PPASGRPPGPPPQGGPQQPPPQGgkQPQGPPPQGGPQRpppgkpqGPPPQGGPQQQGPPPPGKPQGP 124

                  .
gi 111185930   77 P 77
Cdd:pfam15240 125 P 125
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
14-74 5.83e-04

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 42.50  E-value: 5.83e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930  14 TPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLAR 74
Cdd:PRK11855 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLAR 254
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2-75 5.92e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 5.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111185930    2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PHA03307  317 SSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA 390
PHA03269 PHA03269
envelope glycoprotein C; Provisional
5-75 6.48e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.41  E-value: 6.48e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   5 SHRNSSPARTPPQASPARTSPARAP-PQAS----PARTPPQASPTRTPPQASP--ARAPPPQASPARASPARASLARA 75
Cdd:PHA03269  50 ASRAPDPAVAPTSAASRKPDLAQAPtPAASekfdPAPAPHQAASRAPDPAVAPqlAAAPKPDAAEAFTSAAQAHEAPA 127
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
21-77 6.63e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.42  E-value: 6.63e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930  21 ARTSPARAPPQASPARTPPQASP--TRTPPQASPARAPPPQASPARASPARAslARAPP 77
Cdd:PRK14965 378 ERGAPAPPSAAWGAPTPAAPAAPppAAAPPVPPAAPARPAAARPAPAPAPPA--AAAPP 434
PHA03247 PHA03247
large tegument protein UL36; Provisional
7-136 6.67e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 6.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    7 RNSSPARTPPQASPARTSPARA--PPQASPART-PPQASPTRTPPQASPARAPPPQASPARASP----ARASLARAPPSR 79
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAalPPAASPAGPlPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAK 2874
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930   80 SSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2875 PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
10-76 6.84e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 227665 [Multi-domain]  Cd Length: 931  Bit Score: 42.50  E-value: 6.84e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930  10 SPARTP--PQASPARTSPARAPPQASPARTPPQ----ASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:COG5373   49 KAAEQMaaPEAAEAAPLPAAAESIASPEVPPPVppapAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANP 121
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
13-132 7.65e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 7.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   13 RTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSAS 92
Cdd:PHA03307  257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 111185930   93 TTSSPTRVYLV-------RATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PHA03307  337 RGAAVSPGPSPsrspspsRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
Pro-rich pfam15240
Proline-rich; This family includes several eukaryotic proline-rich proteins.
2-77 7.84e-04

Proline-rich; This family includes several eukaryotic proline-rich proteins.


Pssm-ID: 434562 [Multi-domain]  Cd Length: 167  Bit Score: 40.35  E-value: 7.84e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930    2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:pfam15240  70 QGGPQQPPPQGGKQPQGPPPQGGPQRPPPGKPQGPPPQGGPQQQGPPPPGKPQGPPPQGGGPPPQPGNPQGPPPPP 145
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
1-130 8.26e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 8.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    1 MDRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPA-RAPPPQASPARASPARASLARAPPSR 79
Cdd:PHA03307   85 RSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMlRPVGSPGPPPAASPPAAGASPAAVAS 164
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 111185930   80 SSSGRSSSARSASTTSSPTRvylVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PHA03307  165 DAASSRQAALPLSSPEETAR---APSSPPAEPPPSTPPAAASPRPPRRSSP 212
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
2-65 8.75e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225689 [Multi-domain]  Cd Length: 226  Bit Score: 41.03  E-value: 8.75e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930   2 DRGSHRNSSPARTPPQASPARTSPARAPPQAS---PARTPPQASPTRTPPQASPARAPPPQASPARA 65
Cdd:COG3147   80 DAGDAAAASVDPQPVAQPPVESTPAGVPVAAQtpkPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAA 146
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
9-76 9.16e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 9.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPArapPPQASPARASPARASLARAP 76
Cdd:PRK12373 247 ARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA---PKEAAKAAAAAAKPALEDKP 311
PHA03381 PHA03381
tegument protein VP22; Provisional
10-77 9.70e-04

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 41.15  E-value: 9.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  10 SPARTPPQASPARTSPARAPpqASPARTPPQ---ASPTRTPPQASPARAPPPQAsPARASPAR----ASLAR------AP 76
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAE--SPSPRDPPNpkgASAPRGRKSACADSAALLDA-PAPAAPKRqktpAGLARklhfstAP 179

                 .
gi 111185930  77 P 77
Cdd:PHA03381 180 T 180
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
8-123 1.18e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PHA03307  110 GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSP 189
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 111185930   88 ARSASTTSSPTRvyLVRATPVGAVPIRASPARSAPA 123
Cdd:PHA03307  190 PAEPPPSTPPAA--ASPRPPRRSSPISASASSPAPA 223
PHA03381 PHA03381
tegument protein VP22; Provisional
5-77 1.35e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 40.76  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   5 SHRNSSPARTPPQAS-------PARTSPARAPPQASPARTPPQASPTRTP------PQASPARAPPPQASP-ARASPARA 70
Cdd:PHA03381  44 ARRGAGQARGRSQAErrfhhydEARADYPYYTGSSSEDERPADPRPSRRPhaqpeaSGPGPARGARGPAGSrGRGRRAES 123

                 ....*..
gi 111185930  71 SLARAPP 77
Cdd:PHA03381 124 PSPRDPP 130
PHA03291 PHA03291
envelope glycoprotein I; Provisional
9-77 1.38e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 41.09  E-value: 1.38e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PHA03291 206 ATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATP 274
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
10-63 1.39e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 41.44  E-value: 1.39e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 111185930  10 SPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQAS-PARAPPPQASPA 63
Cdd:PRK01297  18 APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDkPRRERKPKPASL 72
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
4-137 1.39e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    4 GSHRNSSPARTPPQASPARTSPARAPPQAS-PARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PHA03307  163 ASDAASSRQAALPLSSPEETARAPSSPPAEpPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 111185930   83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFPK 137
Cdd:PHA03307  243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
9-127 1.47e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.09  E-value: 1.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPpqASPARTSPARAPPQASPARTPPQASPTRTPPQ---ASPARA--PPPQAS--PARASPARASLARAPPSRSS 81
Cdd:PTZ00436 227 AAPAKAA--APPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAkaaAPPAKAaaPPAKAAapPAKAAAPPAKAAAAPAKAAA 304
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 111185930  82 SGRSSSARSASTTSSPTRVylvrATPVGAVPIRASPARSAPATRAT 127
Cdd:PTZ00436 305 APAKAAAAPAKAAAPPAKA----AAPPAKAATPPAKAAAPPAKAAA 346
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
5-136 1.52e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.09  E-value: 1.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   5 SHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQAS--PARAS--PARASlarAPPSRS 80
Cdd:PTZ00436 212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAapPAKAAapPAKAA---APPAKA 288
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  81 SSGRSSSARSASTTSSPTRVYLVRATPVGAVPIR--ASPARSA--PATRATRESPGLSFP 136
Cdd:PTZ00436 289 AAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKaaAPPAKAAtpPAKAAAPPAKAAAAP 348
PHA03309 PHA03309
transcriptional regulator ICP4; Provisional
5-76 1.54e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 165564 [Multi-domain]  Cd Length: 2033  Bit Score: 41.38  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    5 SHRNSSPARTPPQASPARTsparAPPQASPARTPPQASPT----------RTPPQASPARAPPPQASPARASPARASLAR 74
Cdd:PHA03309 1820 SSSSSSSSSSSPSSRPSRS----ATPSLSPSPSPPRRAPVdrsrsgrrreRDRPSANPFRWAPRQRSRADHSPDGTAPGD 1895

                  ..
gi 111185930   75 AP 76
Cdd:PHA03309 1896 AP 1897
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
24-76 1.57e-03

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 38.64  E-value: 1.57e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111185930  24 SPARAPPQASPARTPpqasptrTPPQASPARAPPPQAsPARASPARASLARAP 76
Cdd:PRK06549  23 APAQAAAPAQPASTP-------VPVPTEASPQVEAQA-PQPAAAAGADAMPSP 67
PRK12495 PRK12495
hypothetical protein; Provisional
9-75 1.74e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 40.24  E-value: 1.74e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPP--QASPA-RAPPPQASPARASPARASLARA 75
Cdd:PRK12495 106 AEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTaqPATPDeRRSPRQRPPVSGEPPTPSTPDA 175
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
23-130 1.82e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  23 TSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARA----SLARAPPSRSSSGRSSSARSASTTSSPT 98
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAeasaAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
                         90       100       110
                 ....*....|....*....|....*....|..
gi 111185930  99 RVYLVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701
PRK12757 PRK12757
cell division protein FtsN; Provisional
8-63 1.87e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.03  E-value: 1.87e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   8 NSSPARTPPQASPARTSPA--RAPPQASPARTPPQASPTRTPPQASPARAPPPQASPA 63
Cdd:PRK12757 119 VQIQQQAQQQQPPATTAQPqpVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVE 176
PRK10856 PRK10856
cytoskeleton protein RodZ;
8-63 2.01e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.39  E-value: 2.01e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPA 63
Cdd:PRK10856 190 QTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
17-76 2.14e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 40.86  E-value: 2.14e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930  17 QASPARTSPARAPP-QASPARTPPQASPTRTPPQASPARAPPP-QASPARASPARASLARAP 76
Cdd:PRK06975 264 TWADAAAQPATAAPaPSRMTDTNDSKSVTSQPAAAAAAPAPPPnPPATPPEPPARRGRGSAA 325
PHA03247 PHA03247
large tegument protein UL36; Provisional
12-123 2.31e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   12 ARTPPQASPARTS-PARAPPQASPARTPPQASPTRTP-----PQASPARAPPPQASPAR-ASPAR---ASLARAPPSRSS 81
Cdd:PHA03247 2816 AALPPAASPAGPLpPPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRRPPSRSPAAKpAAPARppvRRLARPAVSRST 2895
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 111185930   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA 123
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
PRK10905 PRK10905
cell division protein DamX; Validated
20-132 2.39e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.31  E-value: 2.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  20 PARTSPAR---APPQASPARTPPQASPTR----------TPPQASPARAPPPQASPARASPARASLARAPpsrsssgrss 86
Cdd:PRK10905 127 PATVAPVRngnASRQTAKTQTAERPATTRparkqaviepKKPQATAKTEPKPVAQTPKRTEPAAPVASTK---------- 196
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 111185930  87 sarsastTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PRK10905 197 -------APAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAG 235
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
9-77 2.45e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225805 [Multi-domain]  Cd Length: 292  Bit Score: 39.94  E-value: 2.45e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   9 SSPARTPPQASPARTSPARA----PPQASPARTPPQASPTRTPPQASPARAPPPQASPARASpARASLARAPP 77
Cdd:COG3266  138 VRNASVPTAERPAITRPVRAqavsEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAA-ASGQLKSAPS 209
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
17-69 2.52e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 40.28  E-value: 2.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111185930  17 QASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPAR 69
Cdd:PRK01297  11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRR 63
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
11-136 2.97e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 2.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQA-SPARASPARASLARAPPsRSSSGRSSSAR 89
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAAlAPKAAAAAAATRAEAPP-AAPAPPATADR 438
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111185930  90 SASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485
Pro-rich pfam15240
Proline-rich; This family includes several eukaryotic proline-rich proteins.
9-77 3.00e-03

Proline-rich; This family includes several eukaryotic proline-rich proteins.


Pssm-ID: 434562 [Multi-domain]  Cd Length: 167  Bit Score: 38.81  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    9 SSPARTPPQASPARTSPARA---PPQASP--ARTPPQASPTRTPPQA--------SPARAPPPQASPARASPARASLARA 75
Cdd:pfam15240  82 KQPQGPPPQGGPQRPPPGKPqgpPPQGGPqqQGPPPPGKPQGPPPQGggpppqpgNPQGPPPPPPGNPQGPPQRPPQPGN 161

                  ..
gi 111185930   76 PP 77
Cdd:pfam15240 162 PQ 163
motB PRK12799
flagellar motor protein MotB; Reviewed
8-130 3.03e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.08  E-value: 3.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   8 NSSPARTPPQASPARTSPARAPpqaSPARTPPqASPTRTPPQASPARAPPPqaSPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PRK12799 309 AVTQSSAITPSSAAIPSPAVIP---SSVTTQS-ATTTQASAVALSSAGVLP--SDVTLPGTVALPAAEPVNMQPQPMSTT 382
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 111185930  88 ARSASTTSSPTRvylVRATPVGAVPirASPARSAPATRATRES 130
Cdd:PRK12799 383 ETQQSSTGNITS---TANGPTTSLP--AAPASNIPVSPTSRDA 420
PHA03291 PHA03291
envelope glycoprotein I; Provisional
3-74 3.10e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 39.94  E-value: 3.10e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930   3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQAS----PTRTPPQASPA--RAPPPQASPA-RASPARASLAR 74
Cdd:PHA03291 209 RPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGttpeAEGTPAPPTPGggEAPPANATPApEASRYELTVTQ 287
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
3-77 3.18e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 3.18e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930    3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARaspaRASLARAPP 77
Cdd:PHA03307  862 GGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP----RGGFRRVPP 932
PRK12495 PRK12495
hypothetical protein; Provisional
12-129 3.25e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.08  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  12 ARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQasPARASPARASLARAPPSRSSSGRSSSARSA 91
Cdd:PRK12495 100 AQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQ--PATPDERRSPRQRPPVSGEPPTPSTPDAHV 177
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 111185930  92 STTSSPTRVYLVRAtpVGAVPIRAS----PARSAPATRATRE 129
Cdd:PRK12495 178 AGTLQAARESLVET--LARFARRAAatddPRRAREYLEAARE 217
PRK11633 PRK11633
cell division protein DedD; Provisional
11-68 3.37e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.22  E-value: 3.37e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRtPPQASPARAPPPQASPARASPA 68
Cdd:PRK11633  87 PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP-QQKVEAPPAPKPEPKPVVEEKA 143
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
9-68 3.61e-03

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 428305 [Multi-domain]  Cd Length: 141  Bit Score: 38.15  E-value: 3.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930    9 SSPARTP---PQASPARTSPARAPPQASPARTPPQASPT-----RTPPQASPARAPPPQASPARASPA 68
Cdd:pfam05104  74 PSPALEPepvPQPVPAPVTPVPAPPSEKPAPSPKEKKKKekkaaKVEPAESPEVNSPKPVSAKKEAPL 141
DUF1986 pfam09342
Domain of unknown function (DUF1986); This domain is found in serine proteases and is ...
318-417 3.61e-03

Domain of unknown function (DUF1986); This domain is found in serine proteases and is predicted to contain disulphide bonds.


Pssm-ID: 286432  Cd Length: 116  Bit Score: 37.53  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930  318 WPWQVSLHFGTTHICGGTLIDAQWVLTAAHCFfvtrekllegWKVYAGTSNLHQLPEAASiSQIIINGNYtdEQ----DD 393
Cdd:pfam09342   1 WPWIAKVYLDGNMICSGVLIDASWVIVSGSCL----------RDTNLRHQYISVVLGGAK-TLKSIEGPY--EQivrvDC 67
                          90       100       110
                  ....*....|....*....|....*....|
gi 111185930  394 Y------DIALIRLSKPLTLSAHIHPACLP 417
Cdd:pfam09342  68 RhdipesEISLLHLASPASFSNHVLPTFVP 97
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
8-68 3.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 39.95  E-value: 3.75e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPA 68
Cdd:PRK14948 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
14-68 4.15e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 40.05  E-value: 4.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930   14 TPPQASPARTSPARAP--PQASPARTPPQ----ASPTRTPPQASPARAPPPQA-SPARASPA 68
Cdd:TIGR01645 344 NKAVVSSAKKEAEEVPplPQAAPAVVKPGpmeiPTPVPPPGLAIPSLVAPPGLvAPTEINPS 405
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
13-76 4.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.93  E-value: 4.33e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930  13 RTPPQASPART-SPARAPPQASPARTPPQASP--TRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PRK14954 393 KAPEPDLPQPDrHPGPAKPEAPGARPAELPSPasAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PRK10547 PRK10547
chemotaxis protein CheA; Provisional
15-71 4.43e-03

chemotaxis protein CheA; Provisional


Pssm-ID: 236712 [Multi-domain]  Cd Length: 670  Bit Score: 39.71  E-value: 4.43e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 111185930  15 PPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARAS 71
Cdd:PRK10547 219 ADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
9-136 4.67e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 4.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTP-------------PQASPARAPPP-QASPARASPARASLAR 74
Cdd:PRK07764 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPkhvavpdasdggdGWPAKAGGAAPaAPPPAPAPAAPAAPAG 695
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930  75 APPSRSSSgrsssarsasttssptrvylvrATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PRK07764 696 AAPAQPAP----------------------APAATPPAGQADDPAAQPPQAAQGASAPSPAA 735
Mif2_N pfam15624
Kinetochore CENP-C fungal homolog, Mif2, N-terminal; Mif2_N is a family of fungal proteins ...
2-57 4.99e-03

Kinetochore CENP-C fungal homolog, Mif2, N-terminal; Mif2_N is a family of fungal proteins homologous to mammalian CENP-C. On depletion of CENP-C proper formation of both centromeres and kinetochores is prevented. The N-terminal of CENP-C is necessary for recruitment of some but not all components of the Mis12 complex of the kinetochore.


Pssm-ID: 434820  Cd Length: 134  Bit Score: 37.30  E-value: 4.99e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    2 DRGSHRNSSPARTPPQA-SPART---SPARappqaspaRTPPQASPTRTPPQASPARAPP 57
Cdd:pfam15624  73 DLLSGRRRSPRLPPPRArSPAKTnlnSPAR--------RNPSLALDQPARPSSSPTRGAS 124
PHA03381 PHA03381
tegument protein VP22; Provisional
6-76 5.13e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 38.84  E-value: 5.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111185930   6 HRNSSPARTP-PQASPARTSPARAPPQASPARTPPQASPT---RTPPQ---ASPARAPPPqASPARASPARASLARAP 76
Cdd:PHA03381  84 PADPRPSRRPhAQPEASGPGPARGARGPAGSRGRGRRAESpspRDPPNpkgASAPRGRKS-ACADSAALLDAPAPAAP 160
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
9-77 5.43e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 39.66  E-value: 5.43e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930   9 SSPARTPPQASPARTSPARAPpqaSPaRTPPQASPTRTPPQASPARAPP--PQASPARASPAR-ASLARAPP 77
Cdd:PRK14959 410 PAAGMTPSSAAPATPAPSAAP---SP-RVPWDDAPPAPPRSGIPPRPAPrmPEASPVPGAPDSvASASDAPP 477
motB PRK05996
MotB family protein;
4-76 5.44e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 39.30  E-value: 5.44e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111185930   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PRK05996 202 GQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
1-70 5.51e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 39.11  E-value: 5.51e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   1 MDRGSHRNSSPARTPPqaSPARTSPAraPPQASPARTPPqasptrTPPqaSPARAPPPQASPARASPARA 70
Cdd:PHA03201   1 MKRARSRSPSPPRRPS--PPRPTPPR--SPDASPEETPP------SPP--GPGAEPPPGRAAGPAAPRRR 58
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
10-77 5.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.54  E-value: 5.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111185930  10 SPARTPPQASPARTSPARAPPQASPARTPpqASPTRTPPQA-SPARAPPPQASPARASPA---RASLARAPP 77
Cdd:PRK14954 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKP--EAPGARPAELpSPASAPTPEQQPPVARSAplpPSPQASAPR 452
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
2-132 5.71e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.16  E-value: 5.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930   2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARA--PPPQAS--PARASPARASLARAPP 77
Cdd:PTZ00436 186 ERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAaaAPAKAAaaPAKAAAPPAKAAAPPA 265
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 111185930  78 SRSSSGRSSSARSASTTSSPTRVYLVRATPVGA-VPIRASPARSAPATRATRESPG 132
Cdd:PTZ00436 266 KAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAApAKAAAAPAKAAAAPAKAAAPPA 321
PRK11901 PRK11901
hypothetical protein; Reviewed
11-77 6.39e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 38.90  E-value: 6.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111185930  11 PARTPPQASPARTSPARAPPQAS--PARTPPQASPTRTPPQAspaRAPPPQASPARASPARASLARAPP 77
Cdd:PRK11901 178 PATVAPSKGAKVPATAETHPTPPqkPATKKPAVNHHKTATVA---VPPATSGKPKSGAASARALSSAPA 243
PRK12757 PRK12757
cell division protein FtsN; Provisional
13-77 6.97e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 38.49  E-value: 6.97e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930  13 RTPPQASPARTSPARAPPQASPARTPPQAspTRTPPQASPARAPPPQASPARASPArASLARAPP 77
Cdd:PRK12757 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQ--PVTPPRQTTAPVQPQTPAPVRTQPA-APVTQAVE 171
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2-136 7.87e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.00  E-value: 7.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111185930    2 DRGSHRNSSPARTPPQAS-----PARTSPAR-APPQASPARTPPQASPTRTPPQASPARAPPPQASParaSPARASLARA 75
Cdd:PHA03307  779 EPQRGAGSSPPVRAEAAFrrpgrLRRSGPAAdAASRTASKRKSRSHTPDGGSESSGPARPPGAAARP---PPARSSESSK 855
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111185930   76 PPSRSSSGRSSSARSASTTSSPTRvylvRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03307  856 SKPAAAGGRARGKNGRRRPRPPEP----RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK 912
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
14-76 8.86e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 38.89  E-value: 8.86e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111185930  14 TPPQASPARTSPARA--PPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PRK14959 399 TPGTQGPQGTAPAAGmtPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVP 463
PRK10856 PRK10856
cytoskeleton protein RodZ;
9-72 9.93e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 38.08  E-value: 9.93e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111185930   9 SSPARTPPQASPARTSPARAPPQASPArtPPQASPTRTPPQASPARAPPPQASPARASPARASL 72
Cdd:PRK10856 176 PAPAAPVDTTPTNSQTPAVATAPAPAV--DPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPL 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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