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Conserved domains on  [gi|71979937|ref|NP_001025459|]
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leukosialin precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Chi1 super family cl43877
Chitinase [Carbohydrate transport and metabolism];
45-244 1.50e-03

Chitinase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3469:

Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.51  E-value: 1.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937  45 YTTSITSDPKADSTGDQTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQET-PHATSHPAVPITAN 123
Cdd:COG3469  15 ASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTaTATAAAAAATSTSA 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937 124 SLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSleTSKGTSGPPVTMATDSLETSTGTTGP 203
Cdd:COG3469  95 TLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGS--TTTTTTVSGTETATGGTTTTSTTTTT 172
                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 71979937 204 PVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVP 244
Cdd:COG3469 173 TSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
 
Name Accession Description Interval E-value
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
45-244 1.50e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.51  E-value: 1.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937  45 YTTSITSDPKADSTGDQTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQET-PHATSHPAVPITAN 123
Cdd:COG3469  15 ASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTaTATAAAAAATSTSA 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937 124 SLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSleTSKGTSGPPVTMATDSLETSTGTTGP 203
Cdd:COG3469  95 TLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGS--TTTTTTVSGTETATGGTTTTSTTTTT 172
                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 71979937 204 PVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVP 244
Cdd:COG3469 173 TSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
 
Name Accession Description Interval E-value
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
45-244 1.50e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.51  E-value: 1.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937  45 YTTSITSDPKADSTGDQTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQET-PHATSHPAVPITAN 123
Cdd:COG3469  15 ASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTaTATAAAAAATSTSA 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71979937 124 SLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSleTSKGTSGPPVTMATDSLETSTGTTGP 203
Cdd:COG3469  95 TLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGS--TTTTTTVSGTETATGGTTTTSTTTTT 172
                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 71979937 204 PVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVP 244
Cdd:COG3469 173 TSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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