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Conserved domains on  [gi|188219642|ref|NP_001033030|]
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dnaJ homolog subfamily B member 6 isoform b [Mus musculus]

Protein Classification

molecular chaperone DnaJ( domain architecture ID 1000952)

molecular chaperone DnaJ, part of the DnaK-DnaJ-GrpE system, prevents the aggregation of unfolded substrate and acts primarily by stimulating the ATPase activity of Hsp70

CATH:  2.10.230.10
Gene Ontology:  GO:0051082|GO:0005524|GO:0009408|GO:0006457
PubMed:  8016869|15063739|29290615
SCOP:  4003813|4002149

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 3-108 7.77e-41

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.13  E-value: 7.77e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGi 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG- 82

                         90       100
                 ....*....|....*....|....*.
gi 188219642  83 hFDSPFEFGFTFrnpDDVFREFFGGR 108
Cdd:PRK10767  83 -FGGGGGFGDIF---GDIFGDIFGGG 104
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 3-108 7.77e-41

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.13  E-value: 7.77e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGi 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG- 82

                         90       100
                 ....*....|....*....|....*.
gi 188219642  83 hFDSPFEFGFTFrnpDDVFREFFGGR 108
Cdd:PRK10767  83 -FGGGGGFGDIF---GDIFGDIFGGG 104
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 3-107 2.84e-40

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 142.35  E-value: 2.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642    3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78

                          90       100
                  ....*....|....*....|....*
gi 188219642   83 HFdSPFEFGFtFRNPDDVFREFFGG 107
Cdd:TIGR02349  79 GF-NGFDIGF-FGDFGDIFGDFFGG 101
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-66 1.01e-33

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 116.42  E-value: 1.01e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188219642    3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP-EAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 3-74 9.48e-32

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 114.03  E-value: 9.48e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP-EAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-61 3.04e-29

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 105.01  E-value: 3.04e-29
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642     2 VDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
3-107 3.83e-27

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 108.75  E-value: 3.83e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLngggggggi 82
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA--PDAAEIFAEINEAYEVLSNPEKRANYDKYGHDGV--------- 74

                         90       100
                 ....*....|....*....|....*
gi 188219642  83 hfDSPFEFGFtfrNPDDVFREFFGG 107
Cdd:NF037946  75 --DGEGGFGF---DAFDVFSSFFET 94
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 5.35e-26

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 96.46  E-value: 5.35e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkEEAERKFKQVAEAYEVLSD 58
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 3-108 7.77e-41

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.13  E-value: 7.77e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGi 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG- 82

                         90       100
                 ....*....|....*....|....*.
gi 188219642  83 hFDSPFEFGFTFrnpDDVFREFFGGR 108
Cdd:PRK10767  83 -FGGGGGFGDIF---GDIFGDIFGGG 104
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 3-107 2.84e-40

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 142.35  E-value: 2.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642    3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78

                          90       100
                  ....*....|....*....|....*
gi 188219642   83 HFdSPFEFGFtFRNPDDVFREFFGG 107
Cdd:TIGR02349  79 GF-NGFDIGF-FGDFGDIFGDFFGG 101
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 3-106 3.28e-36

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 131.81  E-value: 3.28e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEeAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14294   5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFS 83

                         90       100
                 ....*....|....*....|....*
gi 188219642  83 HFDSPF-EFGftfrnpdDVFREFFG 106
Cdd:PRK14294  84 GFDDIFsSFG-------DIFEDFFG 101
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-66 1.01e-33

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 116.42  E-value: 1.01e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188219642    3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP-EAEEKFKEINEAYEVLSDPEKRAIYD 63
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 3-121 3.71e-33

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 123.89  E-value: 3.71e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGgggggi 82
Cdd:PRK14290   4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAG------ 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 188219642  83 hfDSPFEF-GFT-FRNPDDVFREFFGGRdpFSFDFFGLLGD 121
Cdd:PRK14290  78 --GSNFNWdNFThFSDINDIFNQIFGGN--FGSDFFSGFGN 114
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 3-121 1.77e-32

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 122.26  E-value: 1.77e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLngggggggi 82
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA-EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP--------- 71

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 188219642  83 hFDSPFEFGFT-FRNPDDVFREF-------FGGRDPFSFDFFGLLGD 121
Cdd:PRK14284  72 -FAGAGGFGGAgMGNMEDALRTFmgafggeFGGGGSFFEGLFGGLGE 117
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 3-120 4.22e-32

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 121.00  E-value: 4.22e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGggggi 82
Cdd:PRK14301   5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG----- 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 188219642  83 hfdspfeFGFTFRNPDDVFREF---FGgrdpfsfDFFGLLG 120
Cdd:PRK14301  79 -------GFGGFSSAEDIFSHFsdiFG-------DLFGFSG 105
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 3-74 9.48e-32

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 114.03  E-value: 9.48e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP-EAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 3-108 3.39e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 118.36  E-value: 3.39e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEG---LNGGGGG 79
Cdd:PRK14282   5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGeqpPYQETES 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 188219642  80 GGIHFDSPF-EFGFTFRNpdDVFREFFGGR 108
Cdd:PRK14282  85 GGGFFEDIFkDFENIFNR--DIFDIFFGER 112
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 3-135 4.82e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 118.33  E-value: 4.82e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGgi 82
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ-- 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 188219642  83 hFDSPFEFGFTFRNPDDVFREFFGGrdpfsFDFFGLLGDfhfqavRIFAQEKK 135
Cdd:PRK14291  80 -QGQEGFSDFGGGNIEDILEDVFDI-----FGFGDIFGR------RRATRERR 120
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 3-107 8.79e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 117.64  E-value: 8.79e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 188219642  83 hfdspfefgftFRNPD-----DVFREFFGG 107
Cdd:PRK14298  84 -----------FRGADfggfgDIFEMFFGG 102
PRK14289 PRK14289
molecular chaperone DnaJ;
3-120 2.06e-29

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 114.16  E-value: 2.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGL-----NGGG 77
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVggaagGGGF 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 188219642  78 GGGGIHFDSPFE-FGftfrnpdDVFREFFGGrdpFSfDFFGLLG 120
Cdd:PRK14289  85 SGEGMSMEDIFSmFG-------DIFGGHGGG---FG-GFGGFGG 117
PRK14280 PRK14280
molecular chaperone DnaJ;
3-110 2.32e-29

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 113.66  E-value: 2.32e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14280   5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 188219642  83 HfDSPFEFGFTFrnpDDVFREFFGG----RDP 110
Cdd:PRK14280  83 G-GGDFGGGFGF---EDIFSSFFGGggrrRDP 110
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-61 3.04e-29

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 105.01  E-value: 3.04e-29
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642     2 VDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 3-110 3.05e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 113.26  E-value: 3.05e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14276   5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 188219642  83 HFdSPFEFGFTFRNPDDVFREFFGG----RDP 110
Cdd:PRK14276  83 GF-GGFDGSGGFGGFEDIFSSFFGGggarRNP 113
PRK14297 PRK14297
molecular chaperone DnaJ;
3-107 6.16e-29

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 112.57  E-value: 6.16e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG 83

                         90       100
                 ....*....|....*....|....*
gi 188219642  83 HFDSpFEFgFTFRNPDDVFREFFGG 107
Cdd:PRK14297  84 GFGG-FDF-SDMGGFGDIFDSFFGG 106
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 3-117 9.63e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 112.21  E-value: 9.63e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGggi 82
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAAS--- 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 188219642  83 hfDSPFEFGFTFRNPDDVFREF---------FGGRDPFSF-DFFG 117
Cdd:PRK14281  80 --GGGPGYGGGGGDFNDIFSAFndmfgggarRGGGSPFGFeDVFG 122
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 3-117 1.37e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 111.82  E-value: 1.37e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14277   6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGG 84

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 188219642  83 HFDSPFE---FGFTFRNPDDVFREFFGgrdpfsfDFFG 117
Cdd:PRK14277  85 FGQGGFGgggFDFDFGGFGDIFEDIFG-------DFFG 115
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 4-107 1.68e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 108.54  E-value: 1.68e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEeAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGIh 83
Cdd:PRK14286   6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQ- 83

                         90       100
                 ....*....|....*....|....
gi 188219642  84 fDSPFEFGFTFRNPDDVFREFFGG 107
Cdd:PRK14286  84 -GAYTDFSDIFGDFGDIFGDFFGG 106
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
3-107 3.83e-27

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 108.75  E-value: 3.83e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLngggggggi 82
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA--PDAAEIFAEINEAYEVLSNPEKRANYDKYGHDGV--------- 74

                         90       100
                 ....*....|....*....|....*
gi 188219642  83 hfDSPFEFGFtfrNPDDVFREFFGG 107
Cdd:NF037946  75 --DGEGGFGF---DAFDVFSSFFET 94
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 3-107 4.79e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 107.60  E-value: 4.79e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK---EGLNGGGGG 79
Cdd:PRK14283   6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHagmDGFSQEDIF 83

                         90       100
                 ....*....|....*....|....*....
gi 188219642  80 GGIHFDSPFE-FGFTFRNPDDVFRefFGG 107
Cdd:PRK14283  84 NNINFEDIFQgFGFGIGNIFDMFG--FGG 110
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 3-107 2.38e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 105.52  E-value: 2.38e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGkeglngggggggi 82
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGG------------- 68

                         90       100       110
                 ....*....|....*....|....*....|...
gi 188219642  83 hfdSPFE--------FGFTFRNPDDVFREFFGG 107
Cdd:PRK14278  69 ---DPLEsaggggggFGGGFGGLGDVFEAFFGG 98
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 5.35e-26

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 96.46  E-value: 5.35e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkEEAERKFKQVAEAYEVLSD 58
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
1-66 3.48e-25

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 95.56  E-value: 3.48e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 188219642   1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:COG2214    4 LKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 1-107 6.90e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 101.50  E-value: 6.90e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK-EGLNGGGGG 79
Cdd:PRK14292   1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTaPGAGMPGGD 78

                         90       100
                 ....*....|....*....|....*...
gi 188219642  80 GgihfdspfeFGFTFRNPDDVFREFFGG 107
Cdd:PRK14292  79 P---------FGGMGFDPMDIFEQLFGG 97
PRK14293 PRK14293
molecular chaperone DnaJ;
1-107 7.71e-25

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 101.22  E-value: 7.71e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKnpeNKEE-AERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGG 79
Cdd:PRK14293   2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDV---NKEPgAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGF 78

                         90       100
                 ....*....|....*....|....*...
gi 188219642  80 GgihfDSPFEFGFTfrnpdDVFREFFGG 107
Cdd:PRK14293  79 P----DMGDMGGFA-----DIFETFFSG 97
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 3-62 2.36e-24

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 92.37  E-value: 2.36e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKR 62
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDP-KAEERFKEINEAYELLSDAEKR 59
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 3-120 7.05e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 97.32  E-value: 7.05e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14299   5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 188219642  83 HFDSPFEF-GFTFRNPDDVFREFFGGRDPFS--FDFFGLLG 120
Cdd:PRK14299  83 GPPGGGDFsGFNVGDFSDFFQQLFGGRGGFGgfGDLFGSVG 123
PRK14279 PRK14279
molecular chaperone DnaJ;
3-66 1.78e-23

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 97.88  E-value: 1.78e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:PRK14279  10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRKEYD 72
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 3-108 1.98e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 97.37  E-value: 1.98e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGi 82
Cdd:PRK14285   4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG- 81

                         90       100
                 ....*....|....*....|....*...
gi 188219642  83 hFDSPFEfGFT--FRNPDDVFREFFGGR 108
Cdd:PRK14285  82 -FSGGFS-GFSdiFEDFGDIFDSFFTGN 107
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 4-107 2.62e-21

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 92.19  E-value: 2.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDK--NPEnkeeaerKFKQVAEAYEVLSDAKKRDIYDKYGKEGLnggggggg 81
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKggDPE-------KFKEISRAYEVLSDPEKRKIYDEYGEEGL-------- 94

                         90       100
                 ....*....|....*....|....*.
gi 188219642  82 ihfdspfEFGFTFRNPDDVFREFFGG 107
Cdd:PTZ00037  95 -------EGGEQPADASDLFDLIFGG 113
PRK14295 PRK14295
molecular chaperone DnaJ;
3-66 1.94e-20

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 89.52  E-value: 1.94e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:PRK14295  10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 3-110 2.10e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 88.91  E-value: 2.10e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGkeglngggggggi 82
Cdd:PRK14287   5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFG------------- 69

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 188219642  83 HFDSPFEFGFT----FRNPDDVFREFFGG----RDP 110
Cdd:PRK14287  70 HTDPNQGFGGGgagdFGGFSDIFDMFFGGgggrRNP 105
PRK14288 PRK14288
molecular chaperone DnaJ;
2-74 4.30e-20

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 88.21  E-value: 4.30e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 188219642   2 VDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74
Cdd:PRK14288   3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 3-105 4.12e-19

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 86.41  E-value: 4.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642    3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNpeNKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGggggggi 82
Cdd:TIGR03835   3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDR------- 73

                          90       100
                  ....*....|....*....|...
gi 188219642   83 hfdspfEFGFTFRnpDDVFREFF 105
Cdd:TIGR03835  74 ------EDDFDFQ--ADVFNSFF 88
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 3-117 1.14e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 81.53  E-value: 1.14e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGlngggggggi 82
Cdd:PRK14296   5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQFGHAA---------- 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 188219642  83 hFDSPFEFGFTFRNPDDVFRE-----FFGGRDPFSfDFFG 117
Cdd:PRK14296  73 -FDGSSGFSSNFGDFEDLFSNmgssgFSSFTNIFS-DFFG 110
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 3-117 1.86e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 80.83  E-value: 1.86e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNpeNKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGGI 82
Cdd:PRK14300   4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 188219642  83 HFDSPFefgftfrNPD--DVFREFFGgrdpfsfDFFG 117
Cdd:PRK14300  82 GNHGGF-------HPDinDIFGDFFS-------DFMG 104
PRK10266 PRK10266
curved DNA-binding protein;
3-106 4.74e-16

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 76.01  E-value: 4.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDkygkeglNGGGGGGGI 82
Cdd:PRK10266   5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYD-------QLWQHRNDP 75

                         90       100
                 ....*....|....*....|....*...
gi 188219642  83 HFDSPFEFG----FTFRNPDDVFREFFG 106
Cdd:PRK10266  76 QFNRQFQHGdgqsFNAEDFDDIFSSIFG 103
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
1-64 4.89e-15

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 67.90  E-value: 4.89e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 188219642   1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDK-----NPENKEEAERKFKQVAEAYEVLSDAKKRDI 64
Cdd:COG1076    3 LDDAFELLGLPPDADDAELKRAYRKLQREHHPDRlaaglPEEEQRLALQKAAAINEAYETLKDPRGIDL 71
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 4-73 8.50e-10

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 59.03  E-value: 8.50e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGL 73
Cdd:PTZ00341  575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 2-66 6.21e-08

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 52.73  E-value: 6.21e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 188219642   2 VDYYEVLGVQRH---ASPEDIKKAYRKQALKWHPDKNPENKEEAERK-FKQVAEAYEVLSDAKKRDIYD 66
Cdd:COG5269   43 VDLYALLGLSKYrtkAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEfFKLIQKAREVLGDRKLRLQYD 111
djlA PRK09430
co-chaperone DjlA;
3-61 1.78e-06

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 47.88  E-value: 1.78e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 188219642   3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDK------NPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKlvakglPPEMMEMAKEKAQEIQAAYELIKKQKG 265
hscB PRK01356
co-chaperone HscB; Provisional
 1-65 7.91e-04

co-chaperone HscB; Provisional


Pssm-ID: 167217 [Multi-domain]  Cd Length: 166  Bit Score: 39.09  E-value: 7.91e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 188219642   1 MVDYYEVLGVQRHASP--EDIKKAYRKQALKWHPDKnPENKEEAERKFKQVAE---AYEVLSDAKKRDIY 65
Cdd:PRK01356   1 MQNYFQLLGLPQEYNIdlKILEKQYFAMQVKYHPDK-AKTLQEKEQNLIIASElnnAYSTLKDALKRAEY 69
PHA03102 PHA03102
Small T antigen; Reviewed
 6-37 1.14e-03

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 38.50  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 188219642   6 EVLGVQRHA--SPEDIKKAYRKQALKWHPDK--NPE 37
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKggDEE 44
PHA02624 PHA02624
large T antigen; Provisional
 6-34 5.73e-03

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 37.66  E-value: 5.73e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 188219642   6 EVLGVQRHA--SPEDIKKAYRKQALKWHPDK 34
Cdd:PHA02624  15 DLLGLPMAAwgNLPLMRKAYLRKCKEYHPDK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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