|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
156-688 |
7.07e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 7.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 156 QELQSVQKLYQEHMTEAQIHEFENRKQKDQlNNFQQLTKKLHVANENIEmtnhhflktvtEQNMEIEKLRKHLRQARLDL 235
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELE-AELEELEAELEELEAELA-----------ELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 236 RVAVSKVEELTKvteglqeQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQIKEL 315
Cdd:COG1196 284 EEAQAEEYELLA-------ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 316 QAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQLIQDAA--IKARKEVESTKKQYEIL 393
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLErlEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 394 ISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENR 473
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 474 IKQLEINS--SEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKET--EDLRKVALEAQKKAKLKVSTME 549
Cdd:COG1196 517 AGLRGLAGavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGraTFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 550 HQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEET--KKLTESAEMRISSLKSELSRQKLHTQELLSQL 627
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLagRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124487197 628 EMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAASMMNLENI 688
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-537 |
1.20e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 214 VTEQNMEIEKLRKhlrqarlDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCV 293
Cdd:TIGR02168 672 ILERRREIEELEE-------KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 294 AIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAN--IKQNQILLEEKQKEVDREK-------M 364
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeeLKALREALDELRAELTLLNeeaanlrE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 365 KKTMSQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYR 444
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 445 KLE----EMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREncgfvseqrlKLQQEN 520
Cdd:TIGR02168 905 ELEskrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE----------EARRRL 974
|
330
....*....|....*..
gi 124487197 521 EQLQKETEDLRKVALEA 537
Cdd:TIGR02168 975 KRLENKIKELGPVNLAA 991
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
131-655 |
3.97e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 131 RILQEQLQLAnqEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLnnfQQLTKKLHVANENIEMTNhhf 210
Cdd:COG1196 216 RELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL---EELRLELEELELELEEAQ--- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 211 lKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 290
Cdd:COG1196 288 -AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 291 LCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQ 370
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 371 LIQDAAIKARKEVESTKKQYEIL--ISQLKEELSTLQMDCDEKQGQIDRAIR------------GKRAVEEELEKIYREG 436
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLeeAALLEAALAELLEELAEAAARLLLLLEaeadyegflegvKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 437 KQDESDYRKLEE---------MHQRCLAAERSKDDLQLRLKSAE---------NRIKQLEINSSEEMSRSHEMIQKLQTV 498
Cdd:COG1196 527 AVLIGVEAAYEAaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 499 LESERENCGFVSEQRLkLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELR 578
Cdd:COG1196 607 DLREADARYYVLGDTL-LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 579 HLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEH-------------- 644
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelpeppdleel 765
|
570
....*....|.
gi 124487197 645 QEKANRLQRRL 655
Cdd:COG1196 766 ERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
154-536 |
5.35e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 5.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 154 ASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQARL 233
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 234 DLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVlktgksnLEKQIK 313
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED-------LEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 314 ELQakcsesenEKYEAISRARDSMQLLEEANIKQNQILLEEK-QKEVDREKMKKTMSQLIQDaaikaRKEVESTKKQYEI 392
Cdd:TIGR02168 849 ELS--------EDIESLAAEIEELEELIEELESELEALLNERaSLEEALALLRSELEELSEE-----LRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 393 LISQLKEELSTLQMDCDEKQGQIDRaIRGKRAVEEELEkiyregkqdesdyrkLEEMHQRCLAAERSKDDLQLRLKSAEN 472
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDN-LQERLSEEYSLT---------------LEEAEALENKIEDDEEEARRRLKRLEN 979
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124487197 473 RIKQL-EIN--SSEEmsrshemiqklqtvLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALE 536
Cdd:TIGR02168 980 KIKELgPVNlaAIEE--------------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
154-684 |
3.77e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 154 ASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQARL 233
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 234 DLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRlcVAIEEADVLKTGKSNLEKQIK 313
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR--RERLQQEIEELLKKLEEAELK 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 314 ELQAKCSESENEKYEAISRARDSMQLLEEAN--IKQNQILLEEKQKEVDREKMKKTMSQLIQDAA---IKARKEVESTKK 388
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELReeLEEAEQALDAAERELAQLQARLDSLERLQENLegfSEGVKALLKNQS 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 389 QYEILISQLKEELST---------------LQMDCDEKQGQIDRAI------RGKRAVEEELEKIYREGKQDESDYRKLE 447
Cdd:TIGR02168 517 GLSGILGVLSELISVdegyeaaieaalggrLQAVVVENLNAAKKAIaflkqnELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 448 EMHQRCLAAERSKDDLQLR---------------LKSAENRIKQLE------------INSSEEMSRSHEMIQKLQTVLE 500
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRkalsyllggvlvvddLDNALELAKKLRpgyrivtldgdlVRPGGVITGGSAKTNSSILERR 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 501 SERENCgfvSEQRLKLQQENEQLQKETEDLRKvALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHL 580
Cdd:TIGR02168 677 REIEEL---EEKIEELEEKIAELEKALAELRK-ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 581 LAAQQKTANRWKEETKKLTES------AEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRR 654
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
570 580 590
....*....|....*....|....*....|
gi 124487197 655 LSQAEERAASASQQLSVITVQRRKAASMMN 684
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
396-664 |
2.08e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 396 QLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEsdyRKLEEMHQRCLAAERSKDDLQLRLKSAENRIK 475
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 476 QLEINSSEEMSRSHEMIQKLQTVLESEREncgfvseqrlkLQQENEQLQKETEDLRkvalEAQKKAKLKVSTMEHQFSIK 555
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAE-----------LEEKLEELKEELESLE----AELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 556 EHGFE------VQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESA-EMRISSLKSELSRQKLHTQELLSQLE 628
Cdd:TIGR02168 378 EEQLEtlrskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELE 457
|
250 260 270
....*....|....*....|....*....|....*.
gi 124487197 629 MANEKVAENEKLILEHQEKANRLQRRLSQAEERAAS 664
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1-530 |
2.37e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 1 MATEIDLLRDQKDKlndILRQHQIEHIfrDPTMQNSMSKGGRGDTLVDSINEQSSLPPLIAEYEKHLEELNRQLTYYQKH 80
Cdd:TIGR01612 1148 IKAQINDLEDVADK---AISNDDPEEI--EKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKN 1222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 81 MGemKLQLETVITENERLHSKLK---------DAVEKQLEALPFGTGIGNDICADDETVRIL-----------QEQLQLA 140
Cdd:TIGR01612 1223 LG--KLFLEKIDEEKKKSEHMIKameayiedlDEIKEKSPEIENEMGIEMDIKAEMETFNIShdddkdhhiisKKHDENI 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 141 NQEKTWALELWQTASQE--LQSVQKLYQEHMTEAQIH---------EFENRKQKDQLNNFQQLTKKLHVANENIEMTNhh 209
Cdd:TIGR01612 1301 SDIREKSLKIIEDFSEEsdINDIKKELQKNLLDAQKHnsdinlylnEIANIYNILKLNKIKKIIDEVKEYTKEIEENN-- 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 210 flKTVTEQNMEIEKLRKHLRQaRLDLRVAVSKVEE----------LTKVTEgLQEQMLKKEEDIMSAQGKEEASDRRVQQ 279
Cdd:TIGR01612 1379 --KNIKDELDKSEKLIKKIKD-DINLEECKSKIEStlddkdidecIKKIKE-LKNHILSEESNIDTYFKNADENNENVLL 1454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 280 LQSSIKQLESRLCVAIEEADvlKTGKSNLEKQIKELQAKCSESENEKYEAISRARdsmqlleeaNIKQNQILLEEKQKEV 359
Cdd:TIGR01612 1455 LFKNIEMADNKSQHILKIKK--DNATNDHDFNINELKEHIDKSKGCKDEADKNAK---------AIEKNKELFEQYKKDV 1523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 360 drekmkktMSQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD 439
Cdd:TIGR01612 1524 --------TELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAA 1595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 440 ESDYRKLEEMHQRCLAAERSK---DDLQLRLKSAENRIKQLEINSSE-EMSRSHEMIQKLQTVLESERENCGFVSEQRLK 515
Cdd:TIGR01612 1596 IDIQLSLENFENKFLKISDIKkkiNDCLKETESIEKKISSFSIDSQDtELKENGDNLNSLQEFLESLKDQKKNIEDKKKE 1675
|
570
....*....|....*
gi 124487197 516 LQQENEQLQKETEDL 530
Cdd:TIGR01612 1676 LDELDSEIEKIEIDV 1690
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
307-657 |
2.82e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 307 NLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKARkevest 386
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKA----LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA------ 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 387 kkQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRclaAERSKDDLQLR 466
Cdd:TIGR02168 751 --QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL---LNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 467 LKSAENRIKQLEInSSEEMSRSHEMIQKLQTVLESERENCGfvsEQRLKLQQENEQLQKEtedlRKVALEAQKKAKLKVS 546
Cdd:TIGR02168 826 LESLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELE---ELIEELESELEALLNE----RASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 547 TMEHQfsikehgfevqLREMEDSNRnsivELRHLLAAQQKTANRWKEETkkltESAEMRISSLKSELSrqklhtQELLSQ 626
Cdd:TIGR02168 898 ELSEE-----------LRELESKRS----ELRRELEELREKLAQLELRL----EGLEVRIDNLQERLS------EEYSLT 952
|
330 340 350
....*....|....*....|....*....|.
gi 124487197 627 LEMANEKVAENEKLILEHQEKANRLQRRLSQ 657
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-649 |
4.96e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 135 EQLQLANQEKTWALELWQTASQ---ELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENiEMTNHHFL 211
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE-AKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 212 KTVTEQNMEIEKLRKHLRQARldlrvavSKVEELTKVTEGLQ--EQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLES 289
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDK-------KKADELKKAAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 290 RLCVAIEEADVLKTGKSNLEKQIKElqAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMS 369
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 370 QLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVE---EELEKIYREGKQDESDYRKL 446
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 447 EE-----MHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEmiQKLQTVLESERENCGFVSEQRLKLQQENE 521
Cdd:PTZ00121 1615 AEeakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA--AEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 522 QLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEV-QLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTE 600
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 124487197 601 SAEMRISSLKSELSRQKlhtQELLSQLEMANEKVAENEKLILEHQEKAN 649
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEED---EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
211-660 |
1.08e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 211 LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 290
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 291 LCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEA----------ISRARDSMQLLEE-ANIKQNQILLEEKQKEV 359
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahneeAESLREDADDLEErAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 360 DREKMKKTMSQL--IQDAAIKARKEVESTKKQYEILISQLKEELSTLQmDCDEKQGQIDRAIRGKRAVEEELEKIYREGK 437
Cdd:PRK02224 375 AREAVEDRREEIeeLEEEIEELRERFGDAPVDLGNAEDFLEELREERD-ELREREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 438 --------QDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLE--INSSEEMSRSHEMIQKLQTVLESERENCG 507
Cdd:PRK02224 454 cpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 508 FVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKlkvstmEHQFSIKEhgFEVQLREMEDSnRNSIVELRHLLAAQQKT 587
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAE------EAREEVAE--LNSKLAELKER-IESLERIRTLLAAIADA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 588 ANRWKEETKKLTESAEM-------------RISSLKSELSRQKLhtQELLSQLEMANEKVAENEKLILEHQEKANRLQRR 654
Cdd:PRK02224 605 EDEIERLREKREALAELnderrerlaekreRKRELEAEFDEARI--EEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
|
....*.
gi 124487197 655 LSQAEE 660
Cdd:PRK02224 683 IGAVEN 688
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-661 |
1.27e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 239 VSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRvqQLQSSIKQLESRLCVAIEEA-DVLKTGKSNLEKQIKELQA 317
Cdd:PTZ00121 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK--KAEAARKAEEVRKAEELRKAeDARKAEAARKAEEERKAEE 1216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 318 KCSESENEKYEAISRARDSMQLLEEANiKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKARKEVESTKKQYEILISQL 397
Cdd:PTZ00121 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 398 KEELSTLQMDCDEKQGQidrairGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQL 477
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 478 EINSSEEMSRSHEMIQKLQTVLESER-----ENCGFVSEQRLKLQQEN---EQLQKETEDLRKvALEAQKKAKLKVSTME 549
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEakkkaEEDKKKADELKKAAAAKkkaDEAKKKAEEKKK-ADEAKKKAEEAKKADE 1448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 550 HQFSIKE-HGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLE 628
Cdd:PTZ00121 1449 AKKKAEEaKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
410 420 430
....*....|....*....|....*....|....*
gi 124487197 629 MANEKVAENEKLILEHQEKANRLQR--RLSQAEER 661
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKaeELKKAEEK 1563
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
194-664 |
1.71e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 194 KKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQarldLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEAS 273
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPE----LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 274 DRRVQQLQSSIKQLESRLCV------AIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQ 347
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 348 NQI-LLEEKQKEVDREKMKKTMSQLIQDAAIKARKEVESTKKQYEIL----ISQLKEELSTLQMDCDEKQGQIDRAIRGK 422
Cdd:PRK03918 338 ERLeELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 423 RAVEEELEKIYREGKQDESDY----RKLEEMHQRCLAAERSKD--DLQLRLKSAENRIKQLEINSSEEmsrshEMIQKLQ 496
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLRKELREL-----EKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 497 TVLESERENCGFVSEQRLKLQQEN-EQLQKETEDLRKVaLEAQKKAKLKVSTMEHQFSiKEHGFEVQLREMEDSNRNSIV 575
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKL-KEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 576 ELRHLLAAQQKTANRWKEETKKLTESAE------MRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKAN 649
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490
....*....|....*
gi 124487197 650 RLQRRLSQAEERAAS 664
Cdd:PRK03918 651 ELEKKYSEEEYEELR 665
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-518 |
5.44e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 21 QHQIEHIFRDPTMQNSMSKGGRGDTLVDSINEQSSLPPLIAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHS 100
Cdd:pfam15921 298 QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 101 KLKD------------AVEKQLEALPFGTGIGNDICAD-------DETVRILQ----------------EQLQLANQEKT 145
Cdd:pfam15921 378 QLQKlladlhkrekelSLEKEQNKRLWDRDTGNSITIDhlrreldDRNMEVQRleallkamksecqgqmERQMAAIQGKN 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 146 WALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNfqqLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLR 225
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD---LTASLQEKERAIEATNAEITKLRSRVDLKLQELQ 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 226 ------KHLRQARLDLRVAVSKVEELTKVTEGLQEQMlkkeEDIMSAQGKEeasDRRVQQLQSSIKQLESRLCVAIEEAD 299
Cdd:pfam15921 535 hlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQI----ENMTQLVGQH---GRTAGAMQVEKAQLEKEINDRRLELQ 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 300 VLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKA 379
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 380 rKEVESTKKQYEILISQLKEELST---------------------LQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQ 438
Cdd:pfam15921 688 -EEMETTTNKLKMQLKSAQSELEQtrntlksmegsdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 439 DESDYRKLEEmHQRCLAAERSKDDLQLR-LKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREncgfvSEQRLKLQ 517
Cdd:pfam15921 767 LKEEKNKLSQ-ELSTVATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ-----ESVRLKLQ 840
|
.
gi 124487197 518 Q 518
Cdd:pfam15921 841 H 841
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
323-540 |
6.15e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 323 ENEKYEAISRARDSMQLLEEAnikQNQILLEEKQKEV------DREKMKKTMSQLIQDAAIKARKEVESTKKQYEilisQ 396
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA---HEALEDAREQIELlepireLAERYAAARERLAELEYLRAALRLWFAQRRLE----L 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 397 LKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREgkQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQ 476
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124487197 477 LEINSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKV--ALEAQKK 540
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERRKS 436
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
420-682 |
1.05e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 420 RGKRAVEEELEKIYREGKQDESDYRKLEEM-HQRCLAAERSKddLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTV 498
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMdRQAAIYAEQER--MAMERERELERIRQEERKRELERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 499 LESERencgfvseQRLKLQQENEQLQKETEDLRKVAL---EAQKKAKLKVSTMEHQFSIKEHGFEVQLREMED------- 568
Cdd:pfam17380 378 RELER--------LQMERQQKNERVRQELEAARKVKIleeERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerareme 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 569 -------SNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLI 641
Cdd:pfam17380 450 rvrleeqERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 124487197 642 LEHQEKANRLQRRLSQAE-ERAASASQQLSVITVQRRKAASM 682
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmEERRRIQEQMRKATEERSRLEAM 571
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-678 |
2.82e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 1 MATEIDLLRDQKDKLNDILR-----QHQIEHIFRDPTMQNSMSKGGRGDTLVDSINEQSSLPPLIAEYEKHLEELNRQLT 75
Cdd:pfam15921 115 LQTKLQEMQMERDAMADIRRresqsQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 76 YYQKHMGEMKLQLETVITENERlhsKLKDAVEKQLEALpfgtgiGNDICADDETVRILQEQLQLANQEKTWALELWQTAS 155
Cdd:pfam15921 195 DFEEASGKKIYEHDSMSTMHFR---SLGSAISKILREL------DTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 156 QElqSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQltkKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQARldl 235
Cdd:pfam15921 266 QD--RIEQLISEHEVEITGLTEKASSARSQANSIQS---QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAK--- 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 236 RVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVL---KTGKS------ 306
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrDTGNSitidhl 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 307 ------------NLEKQIKELQAKCSESENEKYEAISRARDSMQ-------LLEEANIKQNQILLEEKQKEVDREKMKKT 367
Cdd:pfam15921 418 rrelddrnmevqRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvssltaQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 368 MSQLIQDAAIKARKeVESTKKQYEILISQLKEELSTLQMDCDEKQG--QIDRAIRGKRAVEEELEKIYREGKQDESDYRK 445
Cdd:pfam15921 498 VSDLTASLQEKERA-IEATNAEITKLRSRVDLKLQELQHLKNEGDHlrNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 446 LEEMHQRCLAA-ERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTvLESERENCGFVSEQRLK----LQQEN 520
Cdd:pfam15921 577 LVGQHGRTAGAmQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD-LELEKVKLVNAGSERLRavkdIKQER 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 521 EQLQKETEDLRKvaleaqkkaklKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKeeTKKLTE 600
Cdd:pfam15921 656 DQLLNEVKTSRN-----------ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLK--SMEGSD 722
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124487197 601 SAEMRIS-SLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRK 678
Cdd:pfam15921 723 GHAMKVAmGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
236-453 |
6.76e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.71 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 236 RVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQ---- 311
Cdd:pfam05667 310 NEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQykvk 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 312 -------------IKELQAKCSESEN------EKYEAIsRARDSMQLLEEANIKQNQiLLEEKQKEVDREKMKKTMSQLI 372
Cdd:pfam05667 390 kktldllpdaeenIAKLQALVDASAQrlvelaGQWEKH-RVPLIEEYRALKEAKSNK-EDESQRKLEEIKELREKIKEVA 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 373 QDAAIKAR------KEVES----------TKKQYEIL--ISQLKEELSTLQMDCDEKQGQIDRAI-RGKRAVEEELEKIY 433
Cdd:pfam05667 468 EEAKQKEElykqlvAEYERlpkdvsrsayTRRILEIVknIKKQKEEITKILSDTKSLQKEINSLTgKLDRTFTVTDELVF 547
|
250 260
....*....|....*....|...
gi 124487197 434 REGKQDES---DYRKLEEMHQRC 453
Cdd:pfam05667 548 KDAKKDESvrkAYKYLAALHENC 570
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
220-435 |
7.10e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 7.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 220 EIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRlcvaieead 299
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE--------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 300 vLKTGKSNLEKQIKELQAKCSESENE---KYEAISRARDSMQLLEEANiKQNQILLEEKQKEVDREKMKKTMSQLIQDAA 376
Cdd:COG4942 99 -LEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLA-PARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 124487197 377 IKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYRE 435
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
593-685 |
8.04e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.02 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 593 EETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVI 672
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK 217
|
90
....*....|....
gi 124487197 673 TVQR-RKAASMMNL 685
Cdd:PRK11448 218 RKEItDQAAKRLEL 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
238-448 |
8.75e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 238 AVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQIKELQA 317
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 318 KCSESENE------KYEAISRARDSMQLLEEANIKQNQILLE--EKQKEVDREKMKKTMSQLIQDAAIKArkEVESTKKQ 389
Cdd:COG4942 98 ELEAQKEElaellrALYRLGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRA--ELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 124487197 390 YEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEE 448
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
248-392 |
9.16e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 248 VTEGLQEQMLKKEEDimSAQGKEEASDRRVQQLQSSIKQLESRlcvaIEEadvLKTGKSNLEKQIKELQAKCSESENEKY 327
Cdd:COG2433 381 ALEELIEKELPEEEP--EAEREKEHEERELTEEEEEIRRLEEQ----VER---LEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 328 EAISRARDSMQLLEEANIKQNQI-----LLEEKQKEVDR-----EKMKKTMSQLIQDAAIKA-------RKEVESTKKQY 390
Cdd:COG2433 452 EARSEERREIRKDREISRLDREIerlerELEEERERIEElkrklERLKELWKLEHSGELVPVkvvekftKEAIRRLEEEY 531
|
..
gi 124487197 391 EI 392
Cdd:COG2433 532 GL 533
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
323-670 |
9.73e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 323 ENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDrEKMKKTMSQliQDAAIKARKEVESTKKQYEilisQLKEELS 402
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELD-EEIERYEEQ--REQARETRDEADEVLEEHE----ERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 403 TLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDyrkLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEinss 482
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE---RDDLLAEAGLDDADAEAVEARREELEDRDEELR---- 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 483 EEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRkvalEAQKKAKLKVSTMEHQFSIKEHGFE-- 560
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR----EAVEDRREEIEELEEEIEELRERFGda 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 561 -VQLREMED------SNRNSIVELRHLLAAQQKTANRWKEETKKL---------------------TESAEMRISSLKSE 612
Cdd:PRK02224 404 pVDLGNAEDfleelrEERDELREREAELEATLRTARERVEEAEALleagkcpecgqpvegsphvetIEEDRERVEELEAE 483
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 124487197 613 LSRQKLHTQELLSQLEMAnEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLS 670
Cdd:PRK02224 484 LEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
412-681 |
1.21e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 412 QGQIDRAIRGK----------------------------RAVEEELEKI-----------------------YREGKQDE 440
Cdd:COG1196 143 QGMIDRIIEAKpeerraiieeaagiskykerkeeaerklEATEENLERLedilgelerqleplerqaekaerYRELKEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 441 SDYR------KLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEM-----------------IQKLQT 497
Cdd:COG1196 223 KELEaellllKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeleleeaqaeeyellaeLARLEQ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 498 VLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKK---AKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSI 574
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEleeAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 575 VELRHLLAAQQKTANRWKEETKKLT--ESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQ 652
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340
....*....|....*....|....*....
gi 124487197 653 RRLSQAEERAASASQQLSVITVQRRKAAS 681
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-482 |
1.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 211 LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVtEGLQEQMLKKEEDIMSAqgkeEASDRRVQQLQSSIKQLESR 290
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV-ASAEREIAELEAELERL----DASSDDLAALEEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 291 LCVAIEEADVLKTGKSNLEKQIKELQakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQ 370
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAE-----------EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 371 LIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDcdekqgqIDRAIRGKRAVEEELEKIYREGKqdesdYRKLEEMH 450
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPAETAD-------LDADLESLPEYLALLDRLEEDGL-----PEYEERFK 837
|
250 260 270
....*....|....*....|....*....|....*
gi 124487197 451 QRCL-AAERSKDDLQLRLKSAENRIKQ--LEINSS 482
Cdd:COG4913 838 ELLNeNSIEFVADLLSKLRRAIREIKEriDPLNDS 872
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
61-425 |
1.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 61 AEYEKHLEELNRQLtyyqkhmGEMKLQLETVITENERLHSKLKDAVEKQLEAlpfgtgigndicaDDETVRILQEQLQLA 140
Cdd:TIGR02169 670 RSEPAELQRLRERL-------EGLKRELSSLQSELRRIENRLDELSQELSDA-------------SRKIGEIEKEIEQLE 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 141 NQEKTWALELwqtasQELQSVQKLYQEHMTEAQIHEFENRKQKDQLnnfQQLTKKLHVANENIE-MTNHHFLKTVTEQNM 219
Cdd:TIGR02169 730 QEEEKLKERL-----EELEEDLSSLEQEIENVKSELKELEARIEEL---EEDLHKLEEALNDLEaRLSHSRIPEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 220 EIEKLRKHLRQARLDLRVAVSKV----EELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAI 295
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 296 EEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQI------LLEEKQKEVDREKMKKTMS 369
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIedpkgeDEEIPEEELSLEDVQAELQ 961
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124487197 370 QL------IQDAAIKARKEVESTKKQYeiliSQLKEELSTLQMDCDEKQGQIDRAIRGKRAV 425
Cdd:TIGR02169 962 RVeeeiraLEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
60-431 |
2.18e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 60 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVIT-----ENERLHSKLKDAVEKQLEALPfGTGIGNDICADDETVRILQ 134
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQqlerlRREREKAERYQALLKEKREYE-GYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 135 EQLQLANQEKTWALELWQTASQELQSVQKLYQEhmTEAQIhefeNRKQKDQLNNFQQLTKKLHVANENIEmtnhhflKTV 214
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKI----KDLGEEEQLRVKEKIGELEAEIASLE-------RSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 215 TEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVA 294
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 295 IEEADVLKTGKSNLEKQIKELQakcsESENEKYEAISRARDSMQLLEEAnIKQNQILLEEKQKEVdrEKMKKTMSQLIQD 374
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQ----EELQRLSEELADLNAAIAGIEAK-INELEEEKEDKALEI--KKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 375 AAiKARKEVESTKKQYEIL---ISQLKEELSTLQmdcdEKQGQIDRAIRGKRAVEEELEK 431
Cdd:TIGR02169 464 LS-KYEQELYDLKEEYDRVekeLSKLQRELAEAE----AQARASEERVRGGRAVEEVLKA 518
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
441-679 |
2.59e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 441 SDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLeinsSEEMSRSHEMIQKLQTVLESerencgfVSEQRLKLQQEN 520
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL----SQELSDASRKIGEIEKEIEQ-------LEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 521 EQLQKETEDLrKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIV-ELRHLLAAQQKTANRWkeetKKLT 599
Cdd:TIGR02169 740 EELEEDLSSL-EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRI----EARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 600 ESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKA 679
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-553 |
3.60e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 135 EQLQLANQEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVaneniemtnhhflKTV 214
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK-------------KKA 1566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 215 TEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQ----EQMLKKEEDIMSAQ--GKEEASDRRVQQLQSSIKQLE 288
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaEEAKKAEEAKIKAEelKKAEEEKKKVEQLKKKEAEEK 1646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 289 SRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAniKQNQILLEEKQKEVDREKMKKTM 368
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKA 1724
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 369 SQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKiyREGKQDESDYRKLEE 448
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE--EDEKRRMEVDKKIKD 1802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 449 MHQRCLAAERSKDDLQLRLksaeNRIKQLEINSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETE 528
Cdd:PTZ00121 1803 IFDNFANIIEGGKEGNLVI----NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKE 1878
|
410 420
....*....|....*....|....*
gi 124487197 529 DLRKVALEAQKKAKLKVSTMEHQFS 553
Cdd:PTZ00121 1879 DDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
305-656 |
4.25e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 305 KSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIK----QNQILLEEKQKEVDREKMKKTMSQLIQ-----DA 375
Cdd:pfam05557 8 KARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRnqelQKRIRLLEKREAEAEEALREQAELNRLkkkylEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 376 AIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLA 455
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 456 AERSKDDLQLRLKSAENRIKQLEINSSEEMSrshemIQKLQTVLESERENCGFVSEqrlkLQQENEQLQKETEDLRKvAL 535
Cdd:pfam05557 168 AEQRIKELEFEIQSQEQDSEIVKNSKSELAR-----IPELEKELERLREHNKHLNE----NIENKLLLKEEVEDLKR-KL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 536 EAQKKAKLKVSTMEhqfsIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEEtkkLTESAEmrISSLKSELSR 615
Cdd:pfam05557 238 EREEKYREEAATLE----LEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQRE---IVLKEE--NSSLTSSARQ 308
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 124487197 616 QKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLS 656
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVL 349
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
453-681 |
4.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 453 CLAAERSKDDLQLRLKSAENRIKQLE---INSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETED 529
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 530 LRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVeLRHLLAAQQKTANRWKEETKKLTESAEmrisSL 609
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRA----EL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124487197 610 KSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAAS 681
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-615 |
5.99e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 211 LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEdimSAQGKEEASDRRVQQLQSSIKQLESR 290
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE---LERLKKRLTGLTPEKLEKELEELEKA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 291 LCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRAR-----DSMQLLEEANIKQNQILLEEKQKEVDREKMK 365
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRelteeHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 366 KTMSQLiqDAAIKARKEVESTKKQYEILISqLKEELSTLQMDcdekqgQIDRAIRGKRAVEEELEKIYREGKQDESDYRK 445
Cdd:PRK03918 480 KELREL--EKVLKKESELIKLKELAEQLKE-LEEKLKKYNLE------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 446 LEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQK 525
Cdd:PRK03918 551 LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDK 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 526 ETEDLRKVALEAQKKAKlKVSTMEHQFSIKEH----GFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLtES 601
Cdd:PRK03918 631 AFEELAETEKRLEELRK-ELEELEKKYSEEEYeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER-EK 708
|
410
....*....|....
gi 124487197 602 AEMRISSLKSELSR 615
Cdd:PRK03918 709 AKKELEKLEKALER 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
147-669 |
6.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 147 ALELW-QTAS-QELQSVQKLYQEHM-----TEAQIHEFenRKQKDQLNNFQQLTKKlhvANENIEMtnhhfLKTVTEQNM 219
Cdd:COG4913 193 ALRLLhKTQSfKPIGDLDDFVREYMleepdTFEAADAL--VEHFDDLERAHEALED---AREQIEL-----LEPIRELAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 220 EIEKLRKHLRQ-----ARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSS--------IKQ 286
Cdd:COG4913 263 RYAAARERLAEleylrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQirgnggdrLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 287 LESRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARdsmQLLEEANIKQNQILLEEKQKEVDREKMKK 366
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA---ALLEALEEELEALEEALAEAEAALRDLRR 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 367 TMSQLIQD-AAIKARKEVEStkKQYEILISQLKEELST-----------LQMDCDEK--QGQIDRAIRGKR---AVEEE- 428
Cdd:COG4913 420 ELRELEAEiASLERRKSNIP--ARLLALRDALAEALGLdeaelpfvgelIEVRPEEErwRGAIERVLGGFAltlLVPPEh 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 429 ----LEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIK---QLEINS--------SEE--------- 484
Cdd:COG4913 498 yaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRawlEAELGRrfdyvcvdSPEelrrhprai 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 485 -----MSRSHEMIQKLQTVLESERENCGFVSEQRLK-LQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHG 558
Cdd:COG4913 578 tragqVKGNGTRHEKDDRRRIRSRYVLGFDNRAKLAaLEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 559 F---------------EVQLREMEDSNrnsiVELRHlLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQEL 623
Cdd:COG4913 658 WdeidvasaereiaelEAELERLDASS----DDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 124487197 624 LSQLEMANEKVAENEKLILE-----------HQEKANRLQRRLSQAEERAASASQQL 669
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEerfaaalgdavERELRENLEERIDALRARLNRAEEEL 789
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
127-654 |
6.44e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 127 DETVRILQEQLQLANQEK---TWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKD-QLNNFQQLTKKLHVANEN 202
Cdd:pfam05483 274 EEKTKLQDENLKELIEKKdhlTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEaQMEELNKAKAAHSFVVTE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 203 IEMTNHHFLKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGlQEQMLKKEEDIMSAQGKEEASDRRVQQLQS 282
Cdd:pfam05483 354 FEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNN-KEVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 283 SIKQLESRLCVAIE-----------EADVLKTGKSNLEKQIKELQakcSESENEKYEAIS-RARDSMQLLEEANIKQ--N 348
Cdd:pfam05483 433 ELKGKEQELIFLLQarekeihdleiQLTAIKTSEEHYLKEVEDLK---TELEKEKLKNIElTAHCDKLLLENKELTQeaS 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 349 QILLEEKQKEVDREKMKKTMSQLI------QDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGK 422
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQEERMLkqienlEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQM 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 423 RAVEEELEKIYregKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESE 502
Cdd:pfam05483 590 KILENKCNNLK---KQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 503 RencgfVSEQrlKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMehqfsikehgfeVQLREMEDSNRNSIVELRHLLA 582
Cdd:pfam05483 667 K-----ISEE--KLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEM------------VALMEKHKHQYDKIIEERDSEL 727
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124487197 583 AQQKTAnrwKEETKKLTESAEMRISSLKSELSRQKlhtqellSQLEMANEkvaENEKLILEHQEKANRLQRR 654
Cdd:pfam05483 728 GLYKNK---EQEQSSAKAALEIELSNIKAELLSLK-------KQLEIEKE---EKEKLKMEAKENTAILKDK 786
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
133-409 |
6.95e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 133 LQEQLQLANQEKTWALELWQTASQELQSVQKLYQEHmtEAQIHEFENRKQKDQlNNFQQLTKKLHVANENIEMTN---HH 209
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEEL--RLEVSELEEEIEELQ-KELYALANEISRLEQQKQILRerlAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 210 FLKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLEs 289
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE- 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 290 rlcvaieeadvlktgksnleKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMS 369
Cdd:TIGR02168 393 --------------------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 124487197 370 QLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCD 409
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
166-530 |
7.29e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 166 QEHMTEAQIHEFENRKQKDQLNNFQQLTkklhvanenIEMTNHHFLKTVTEQNMEIE---------KLRKHLRQA----- 231
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRL---------VEMARELEELSARESDLEQDyqaasdhlnLVQTALRQQekier 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 232 -RLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQgkEEASDRRVQ--QLQSSIKQLESR------LCVAIEEADVLk 302
Cdd:COG3096 352 yQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAE--EEVDSLKSQlaDYQQALDVQQTRaiqyqqAVQALEKARAL- 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 303 TGKSNLE-KQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQ--ILLEEKQKEVDREKMKKTMSQLIQDAAika 379
Cdd:COG3096 429 CGLPDLTpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayELVCKIAGEVERSQAWQTARELLRRYR--- 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 380 rkEVESTKKQYEILISQLKE--ELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD-ESDYRKLEEMHQRCLAA 456
Cdd:COG3096 506 --SQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQlEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 457 ERSKDDLQLRLKS----------AENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREncgfVSEQRLKLQQENEQLQKE 526
Cdd:COG3096 584 RQQLEQLRARIKElaarapawlaAQDALERLREQSGEALADSQEVTAAMQQLLERERE----ATVERDELAARKQALESQ 659
|
....
gi 124487197 527 TEDL 530
Cdd:COG3096 660 IERL 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
580-669 |
7.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487197 580 LLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAE 659
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90
....*....|
gi 124487197 660 ERAASASQQL 669
Cdd:COG4942 90 KEIAELRAEL 99
|
|
| |
