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Conserved domains on  [gi|157786994|ref|NP_001099429|]
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uncharacterized protein C1orf21 homolog [Rattus norvegicus]

Protein Classification

DUF4612 domain-containing protein( domain architecture ID 10634115)

DUF4612 domain-containing protein similar to Homo sapiens protein C1orf21

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4612 pfam15389
Domain of unknown function (DUF4612); This protein family is a domain of unknown function, ...
 2-118 4.05e-44

Domain of unknown function (DUF4612); This protein family is a domain of unknown function, which is found in eukaryotes. Proteins in this family are typically between 109 and 323 amino acids in length.


:

Pssm-ID: 464696  Cd Length: 110  Bit Score: 139.63  E-value: 4.05e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157786994    2 GCASAKHVATVQNEEEAQKGKSYQNGDVFGDEYRIKPVEEVKYMKNgaeEEQKIAARNQENLEKSASSNTRLKTNKEIPG 81
Cdd:pfam15389   1 GCGSAKQVSTVPNGEEGGHGKAYSNGDAFADEYKIKGVEKVKYMKG---EEKHLNSRNQENLEKSALHLPRSKPQSETGL 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157786994   82 fvhqPRANMHISESQQEFFRMLDEKIEKGRDYCSEEE 118
Cdd:pfam15389  78 ----NFINIHISESQQEFFRMLDEKIEKGRDYCSEEE 110
 
Name Accession Description Interval E-value
DUF4612 pfam15389
Domain of unknown function (DUF4612); This protein family is a domain of unknown function, ...
 2-118 4.05e-44

Domain of unknown function (DUF4612); This protein family is a domain of unknown function, which is found in eukaryotes. Proteins in this family are typically between 109 and 323 amino acids in length.


Pssm-ID: 464696  Cd Length: 110  Bit Score: 139.63  E-value: 4.05e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157786994    2 GCASAKHVATVQNEEEAQKGKSYQNGDVFGDEYRIKPVEEVKYMKNgaeEEQKIAARNQENLEKSASSNTRLKTNKEIPG 81
Cdd:pfam15389   1 GCGSAKQVSTVPNGEEGGHGKAYSNGDAFADEYKIKGVEKVKYMKG---EEKHLNSRNQENLEKSALHLPRSKPQSETGL 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157786994   82 fvhqPRANMHISESQQEFFRMLDEKIEKGRDYCSEEE 118
Cdd:pfam15389  78 ----NFINIHISESQQEFFRMLDEKIEKGRDYCSEEE 110
 
Name Accession Description Interval E-value
DUF4612 pfam15389
Domain of unknown function (DUF4612); This protein family is a domain of unknown function, ...
 2-118 4.05e-44

Domain of unknown function (DUF4612); This protein family is a domain of unknown function, which is found in eukaryotes. Proteins in this family are typically between 109 and 323 amino acids in length.


Pssm-ID: 464696  Cd Length: 110  Bit Score: 139.63  E-value: 4.05e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157786994    2 GCASAKHVATVQNEEEAQKGKSYQNGDVFGDEYRIKPVEEVKYMKNgaeEEQKIAARNQENLEKSASSNTRLKTNKEIPG 81
Cdd:pfam15389   1 GCGSAKQVSTVPNGEEGGHGKAYSNGDAFADEYKIKGVEKVKYMKG---EEKHLNSRNQENLEKSALHLPRSKPQSETGL 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157786994   82 fvhqPRANMHISESQQEFFRMLDEKIEKGRDYCSEEE 118
Cdd:pfam15389  78 ----NFINIHISESQQEFFRMLDEKIEKGRDYCSEEE 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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