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Conserved domains on  [gi|157822777|ref|NP_001101897|]
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prefoldin subunit 1 [Rattus norvegicus]

Protein Classification

prefoldin subunit( domain architecture ID 10487305)

prefoldin subunit works as a transfer protein in conjunction with a chaperonin molecule to form a chaperone complex and correctly fold other nascent proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Prefoldin_1 cd23164
prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic ...
 15-113 5.90e-39

prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic prefoldin complex. Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


:

Pssm-ID: 467480  Cd Length: 99  Bit Score: 126.17  E-value: 5.90e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822777  15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKEL 94
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGRMFVLQPKATVKKELEEKQKEADEKIKKL 80

                         90
                 ....*....|....*....
gi 157822777  95 EQKKSYLERSVKEAEDNIR 113
Cdd:cd23164   81 EKKKEYLERSLKESEDNLR 99
 
Name Accession Description Interval E-value
Prefoldin_1 cd23164
prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic ...
 15-113 5.90e-39

prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic prefoldin complex. Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467480  Cd Length: 99  Bit Score: 126.17  E-value: 5.90e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822777  15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKEL 94
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGRMFVLQPKATVKKELEEKQKEADEKIKKL 80

                         90
                 ....*....|....*....
gi 157822777  95 EQKKSYLERSVKEAEDNIR 113
Cdd:cd23164   81 EKKKEYLERSLKESEDNLR 99
Prefoldin_2 pfam01920
Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.
 17-117 3.46e-13

Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.


Pssm-ID: 396482 [Multi-domain]  Cd Length: 102  Bit Score: 60.70  E-value: 3.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822777   17 QAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQ 96
Cdd:pfam01920   1 INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEVKEQLEERKETLEKEIKTLEK 80

                          90       100
                  ....*....|....*....|.
gi 157822777   97 KKSYLERSVKEAEDNIREMLM 117
Cdd:pfam01920  81 QLEKLEKELEELKEELYKKFG 101
 
Name Accession Description Interval E-value
Prefoldin_1 cd23164
prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic ...
 15-113 5.90e-39

prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic prefoldin complex. Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467480  Cd Length: 99  Bit Score: 126.17  E-value: 5.90e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822777  15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKEL 94
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGRMFVLQPKATVKKELEEKQKEADEKIKKL 80

                         90
                 ....*....|....*....
gi 157822777  95 EQKKSYLERSVKEAEDNIR 113
Cdd:cd23164   81 EKKKEYLERSLKESEDNLR 99
Prefoldin_2 pfam01920
Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.
 17-117 3.46e-13

Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.


Pssm-ID: 396482 [Multi-domain]  Cd Length: 102  Bit Score: 60.70  E-value: 3.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822777   17 QAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQ 96
Cdd:pfam01920   1 INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEVKEQLEERKETLEKEIKTLEK 80

                          90       100
                  ....*....|....*....|.
gi 157822777   97 KKSYLERSVKEAEDNIREMLM 117
Cdd:pfam01920  81 QLEKLEKELEELKEELYKKFG 101
Prefoldin_beta cd00632
Prefoldin beta subunit; Beta subunits of prefoldin, a hexameric molecular chaperone complex, ...
 26-103 7.79e-13

Prefoldin beta subunit; Beta subunits of prefoldin, a hexameric molecular chaperone complex, found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467469  Cd Length: 78  Bit Score: 58.89  E-value: 7.79e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157822777  26 KVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLER 103
Cdd:cd00632    1 EVLALKSQKEELERKINEQKVVLDELSNLKKNRKVYRQQGNIFILASKEETLSELKKTLDHLQKEIKELEQQLKAKEK 78
Prefoldin cd00890
prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and ...
 26-103 2.95e-09

prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits; the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes, there are two or more paralogous genes encoding each subunit, adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467470  Cd Length: 79  Bit Score: 50.03  E-value: 2.95e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157822777  26 KVKLADIQIEQLNRTKKHAHLTDTEIMTLV-DETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLER 103
Cdd:cd00890    1 QVQALSQQIEQLNRQINELEEALDELSNLDkDTEEVYRSVGGVFIEKSKEETKEELEEKLDELQKEIKKLEQQLEAKTK 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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