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Conserved domains on  [gi|193788629|ref|NP_001123356|]
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testis-expressed protein 264 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SbmC super family cl42591
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
41-193 9.79e-08

DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG3449:

Pssm-ID: 442672 [Multi-domain]  Cd Length: 286  Bit Score: 52.55  E-value: 9.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629  41 PPIRnvtVAYKFHMGLYGETGRLFT------ESCSISPK-LRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSpelid 113
Cdd:COG3449  141 PPRR---VAYLRHRGPYEEIGEAFErliawaKARGLLPPdSRTIGIYYDDPDITPPEKLRYDACVTVPEDVALPG----- 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629 114 lyqkfGFKVFSFPAPSHVV-TATFPYTTILSIWLA-TRRVHPAldtyiKERKLCAYPRLEIYQEDqiHFMCPLARQG-DF 190
Cdd:COG3449  213 -----GVEVKTIPGGRYAVlRHKGPYEDLGAAWDWlYGEWLPA-----SGYELRDRPCFEIYLND--PRETPEGELItDI 280

                 ...
gi 193788629 191 YVP 193
Cdd:COG3449  281 YLP 283
 
Name Accession Description Interval E-value
SbmC COG3449
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
41-193 9.79e-08

DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];


Pssm-ID: 442672 [Multi-domain]  Cd Length: 286  Bit Score: 52.55  E-value: 9.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629  41 PPIRnvtVAYKFHMGLYGETGRLFT------ESCSISPK-LRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSpelid 113
Cdd:COG3449  141 PPRR---VAYLRHRGPYEEIGEAFErliawaKARGLLPPdSRTIGIYYDDPDITPPEKLRYDACVTVPEDVALPG----- 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629 114 lyqkfGFKVFSFPAPSHVV-TATFPYTTILSIWLA-TRRVHPAldtyiKERKLCAYPRLEIYQEDqiHFMCPLARQG-DF 190
Cdd:COG3449  213 -----GVEVKTIPGGRYAVlRHKGPYEDLGAAWDWlYGEWLPA-----SGYELRDRPCFEIYLND--PRETPEGELItDI 280

                 ...
gi 193788629 191 YVP 193
Cdd:COG3449  281 YLP 283
PRK10016 PRK10016
DNA gyrase inhibitor SbmC;
77-96 2.13e-03

DNA gyrase inhibitor SbmC;


Pssm-ID: 182195  Cd Length: 156  Bit Score: 38.11  E-value: 2.13e-03
                         10        20
                 ....*....|....*....|
gi 193788629  77 IAVYYDNPHMVPPDKCRCAV 96
Cdd:PRK10016  48 VAVYYDNPDEVPAEKLRCDT 67
 
Name Accession Description Interval E-value
SbmC COG3449
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
41-193 9.79e-08

DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];


Pssm-ID: 442672 [Multi-domain]  Cd Length: 286  Bit Score: 52.55  E-value: 9.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629  41 PPIRnvtVAYKFHMGLYGETGRLFT------ESCSISPK-LRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSpelid 113
Cdd:COG3449  141 PPRR---VAYLRHRGPYEEIGEAFErliawaKARGLLPPdSRTIGIYYDDPDITPPEKLRYDACVTVPEDVALPG----- 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788629 114 lyqkfGFKVFSFPAPSHVV-TATFPYTTILSIWLA-TRRVHPAldtyiKERKLCAYPRLEIYQEDqiHFMCPLARQG-DF 190
Cdd:COG3449  213 -----GVEVKTIPGGRYAVlRHKGPYEDLGAAWDWlYGEWLPA-----SGYELRDRPCFEIYLND--PRETPEGELItDI 280

                 ...
gi 193788629 191 YVP 193
Cdd:COG3449  281 YLP 283
PRK10016 PRK10016
DNA gyrase inhibitor SbmC;
77-96 2.13e-03

DNA gyrase inhibitor SbmC;


Pssm-ID: 182195  Cd Length: 156  Bit Score: 38.11  E-value: 2.13e-03
                         10        20
                 ....*....|....*....|
gi 193788629  77 IAVYYDNPHMVPPDKCRCAV 96
Cdd:PRK10016  48 VAVYYDNPDEVPAEKLRCDT 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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