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Conserved domains on  [gi|195947391|ref|NP_001124334|]
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RAD51-associated protein 1 isoform a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RAD51_interact super family cl24311
RAD51 interacting motif; This motif interacts with RAD51.
328-349 6.98e-09

RAD51 interacting motif; This motif interacts with RAD51.


The actual alignment was detected with superfamily member pfam15696:

Pssm-ID: 406187  Cd Length: 39  Bit Score: 50.77  E-value: 6.98e-09
                          10        20
                  ....*....|....*....|..
gi 195947391  328 PNQSLRLGLSRLARVKPLHPNA 349
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPYL 39
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
328-349 6.98e-09

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 406187  Cd Length: 39  Bit Score: 50.77  E-value: 6.98e-09
                          10        20
                  ....*....|....*....|..
gi 195947391  328 PNQSLRLGLSRLARVKPLHPNA 349
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPYL 39
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
328-349 6.98e-09

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 406187  Cd Length: 39  Bit Score: 50.77  E-value: 6.98e-09
                          10        20
                  ....*....|....*....|..
gi 195947391  328 PNQSLRLGLSRLARVKPLHPNA 349
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPYL 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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