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Conserved domains on  [gi|217272802|ref|NP_001136028|]
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hyaluronan mediated motility receptor isoform a [Homo sapiens]

Protein Classification

HMMR_N and HMMR_C domain-containing protein( domain architecture ID 13869816)

protein containing domains HMMR_N, Smc, and HMMR_C

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
16-339 2.02e-114

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


:

Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 347.96  E-value: 2.02e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   16 GCAPSPGAYDVKTLEVLKGPVSFQKSQRFKQQK--ESKQNLNVDKDTTLPASARKVKSSESKKESQKND---KDLKILEK 90
Cdd:pfam15905   1 GCAPPPGSYDVKTSDALKGPVSFEKSQRFRKQKaaESQPNLNNSKDASTPATARKVKSLELKKKSQKDLkesKDQKELEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   91 EIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLE 170
Cdd:pfam15905  81 EIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKAKFSEDGTQKKMSSLSME 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  171 LMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEK 250
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  251 YKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQ 330
Cdd:pfam15905 241 YKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEE 320

                  ....*....
gi 217272802  331 QEREKLQQK 339
Cdd:pfam15905 321 QEHQKLQQK 329
HMMR_C pfam15908
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ...
553-709 1.43e-62

Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


:

Pssm-ID: 435010 [Multi-domain]  Cd Length: 157  Bit Score: 205.91  E-value: 1.43e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  553 RKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGH 632
Cdd:pfam15908   1 TKQLEMEEQRKARLENTTDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNEKGAAQEELNKLSDAYAKLLGH 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802  633 QNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKVLGIKHFDPSKAFHHESKENFALKTPLKEG 709
Cdd:pfam15908  81 QNQKQKIKHVVKLKEENSQLKQEVSKLRSQLAKEKQVQKKLQEQLNGAQGIRRFDPSKAFQHESKENFEPKTPLKEG 157
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
195-557 5.14e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 56.65  E-value: 5.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  195 KLQVTQRSLEESQGKIAQLEGKLVSIEKEKideksetEKLLEYIEEiscaSDQVEKYKLDIAQLE-ENLKEKNDEILSLK 273
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQA-------EKAERYQEL----KAELRELELALLLAKlKELRKELEELEEEL 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  274 QSLEENIVILSKQVEDLNVKCQLLEKEKEDhvnrnrehnenLNAEMQNLKQKFileQQEREKLQQKELQIDSLLQQEKEL 353
Cdd:COG1196   249 SRLEEELEELQEELEEAEKEIEELKSELEE-----------LREELEELQEEL---LELKEEIEELEGEISLLRERLEEL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  354 SSSLhqklcsfqEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSA 433
Cdd:COG1196   315 ENEL--------EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  434 AHTQATLLLQEKydsmVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRML 513
Cdd:COG1196   387 ELEAELAEIRNE----LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 217272802  514 LDLQTKSALKETEIKEITvSFLQKITDLQNQLKQQEEDFRKQLE 557
Cdd:COG1196   463 KELERELAELQEELQRLE-KELSSLEARLDRLEAEQRASQGVRA 505
 
Name Accession Description Interval E-value
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
16-339 2.02e-114

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 347.96  E-value: 2.02e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   16 GCAPSPGAYDVKTLEVLKGPVSFQKSQRFKQQK--ESKQNLNVDKDTTLPASARKVKSSESKKESQKND---KDLKILEK 90
Cdd:pfam15905   1 GCAPPPGSYDVKTSDALKGPVSFEKSQRFRKQKaaESQPNLNNSKDASTPATARKVKSLELKKKSQKDLkesKDQKELEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   91 EIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLE 170
Cdd:pfam15905  81 EIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKAKFSEDGTQKKMSSLSME 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  171 LMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEK 250
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  251 YKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQ 330
Cdd:pfam15905 241 YKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEE 320

                  ....*....
gi 217272802  331 QEREKLQQK 339
Cdd:pfam15905 321 QEHQKLQQK 329
HMMR_C pfam15908
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ...
553-709 1.43e-62

Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435010 [Multi-domain]  Cd Length: 157  Bit Score: 205.91  E-value: 1.43e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  553 RKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGH 632
Cdd:pfam15908   1 TKQLEMEEQRKARLENTTDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNEKGAAQEELNKLSDAYAKLLGH 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802  633 QNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKVLGIKHFDPSKAFHHESKENFALKTPLKEG 709
Cdd:pfam15908  81 QNQKQKIKHVVKLKEENSQLKQEVSKLRSQLAKEKQVQKKLQEQLNGAQGIRRFDPSKAFQHESKENFEPKTPLKEG 157
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
85-680 1.27e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 65.12  E-value: 1.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   85 LKILEKEIRVLLQERgAQDRRIQDLETELEKMEARLnaALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNL 164
Cdd:COG1196   195 LEELEKQLEKLERQA-EKAERYQELKAELRELELAL--LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  165 RILSLELMKLR-NKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISc 243
Cdd:COG1196   272 LKSELEELREElEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE- 350
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  244 asDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLK 323
Cdd:COG1196   351 --QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  324 QKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEE--ELKQTLDELDKLQQKEEQAERLVK 401
Cdd:COG1196   429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKElsSLEARLDRLEAEQRASQGVRAVLE 508
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  402 QLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQA-------------TLLLQEKYDSMVQSLEDVTAQFESYKALTA 468
Cdd:COG1196   509 ALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAvvveneevakkaiEFLKENKAGRATFLPLDRIKPLRSLKSDAA 588
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  469 SEIEDLKLENSSLQEKAAKAGKNAedVQHQILATESSNQEYVRMLLDLQTKSALKETEIKE----ITVSFLQKITDLQnq 544
Cdd:COG1196   589 PGFLGLASDLIDFDPKYEPAVRFV--LGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEpsgsITGGSRNKRSSLA-- 664
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  545 LKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRD 624
Cdd:COG1196   665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802  625 SYAKLLGHQNLKQKIKHvvKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKV 680
Cdd:COG1196   745 ELEELEEELEELQERLE--ELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
79-392 1.08e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.91  E-value: 1.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    79 QKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKfsen 158
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER---- 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   159 gnQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSE----TEKL 234
Cdd:TIGR02168  749 --IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaanlRERL 826
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   235 LEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEE---NIVILSKQVEDLNVKCQLLEKEKEDHVNRNREH 311
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEElesELEALLNERASLEEALALLRSELEELSEELREL 906
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   312 NENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLhqklcsfQEEMVKEKNLFEEELKQTLDELDKLQQ 391
Cdd:TIGR02168  907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-------LEEAEALENKIEDDEEEARRRLKRLEN 979

                   .
gi 217272802   392 K 392
Cdd:TIGR02168  980 K 980
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
195-557 5.14e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 56.65  E-value: 5.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  195 KLQVTQRSLEESQGKIAQLEGKLVSIEKEKideksetEKLLEYIEEiscaSDQVEKYKLDIAQLE-ENLKEKNDEILSLK 273
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQA-------EKAERYQEL----KAELRELELALLLAKlKELRKELEELEEEL 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  274 QSLEENIVILSKQVEDLNVKCQLLEKEKEDhvnrnrehnenLNAEMQNLKQKFileQQEREKLQQKELQIDSLLQQEKEL 353
Cdd:COG1196   249 SRLEEELEELQEELEEAEKEIEELKSELEE-----------LREELEELQEEL---LELKEEIEELEGEISLLRERLEEL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  354 SSSLhqklcsfqEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSA 433
Cdd:COG1196   315 ENEL--------EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  434 AHTQATLLLQEKydsmVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRML 513
Cdd:COG1196   387 ELEAELAEIRNE----LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 217272802  514 LDLQTKSALKETEIKEITvSFLQKITDLQNQLKQQEEDFRKQLE 557
Cdd:COG1196   463 KELERELAELQEELQRLE-KELSSLEARLDRLEAEQRASQGVRA 505
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
43-678 6.57e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.22  E-value: 6.57e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    43 RFKQQKESKQNLNVDKDttlpASARKVKSSESK---KESQKNDKDLKI--LEKEIRVLLQERGAQDRRIQDLETELEKME 117
Cdd:TIGR02168  233 RLEELREELEELQEELK----EAEEELEELTAElqeLEEKLEELRLEVseLEEEIEELQKELYALANEISRLEQQKQILR 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   118 ARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSEngNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEM--- 194
Cdd:TIGR02168  309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELEEQLETlrs 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   195 KLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEE--ISCASDQVEKYKLDIAQLEENLKEKNDEILSL 272
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEEL 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   273 KQSLEEN---IVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQ------------NLKQKF----------I 327
Cdd:TIGR02168  467 REELEEAeqaLDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseliSVDEGYeaaieaalggR 546
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   328 LEQQEREKLQQKELQIDSLLQQEK------ELSSSLHQKLCSFQEEMVKEKNLFEEELK--------------------- 380
Cdd:TIGR02168  547 LQAVVVENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKdlvkfdpklrkalsyllggvl 626
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   381 --QTLDELDKLQQKEEQAERLVKQLEEEAKSR------AEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQS 452
Cdd:TIGR02168  627 vvDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   453 LEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQhQILATESSNQEYVRMLLDLQTKSALKETEIKEITV 532
Cdd:TIGR02168  707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   533 SFLQKITDLQNQLKQQEE---DFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTK--------------PFQ 595
Cdd:TIGR02168  786 ELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEelsedieslaaeieELE 865
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   596 LQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLlgHQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQE 675
Cdd:TIGR02168  866 ELIEELESELEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943

                   ...
gi 217272802   676 ELN 678
Cdd:TIGR02168  944 RLS 946
PRK12704 PRK12704
phosphodiesterase; Provisional
225-411 1.65e-07

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 54.40  E-value: 1.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 225 IDEKSETEKLLEYIEEiscASDQVEKYKLDIAQL-EENLKEKNDEILSLKQSLEenivilsKQVEDLNVKCQLLEKeked 303
Cdd:PRK12704  24 VRKKIAEAKIKEAEEE---AKRILEEAKKEAEAIkKEALLEAKEEIHKLRNEFE-------KELRERRNELQKLEK---- 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 304 hvnRNREHNENLNAEMQNLKQKfileqqeREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTL 383
Cdd:PRK12704  90 ---RLLQKEENLDRKLELLEKR-------EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159
                        170       180
                 ....*....|....*....|....*....
gi 217272802 384 deLDKLQQK-EEQAERLVKQLEEEAKSRA 411
Cdd:PRK12704 160 --LEKVEEEaRHEAAVLIKEIEEEAKEEA 186
PRK12704 PRK12704
phosphodiesterase; Provisional
326-494 5.68e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 49.39  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 326 FILEQQEREKLQQKELQIDSLLQQ-EKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLE 404
Cdd:PRK12704  23 FVRKKIAEAKIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 405 EEAKSRAEELKLLEEKLKGKEAELEKssaahtqatllLQEKYDSMVQSLEDvtaQFESYKALTASEIEDLKLEN--SSLQ 482
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEK-----------KEEELEELIEEQLQ---ELERISGLTAEEAKEILLEKveEEAR 168
                        170
                 ....*....|..
gi 217272802 483 EKAAKAGKNAED 494
Cdd:PRK12704 169 HEAAVLIKEIEE 180
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
108-624 4.94e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 47.02  E-value: 4.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   108 DLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSkfsengnqknlriLSLELMKLRNKRETKMRGMMA 187
Cdd:pfam15921  114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC-------------LKEDMLNDSNTQIEQLRKMML 180
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   188 KQEGMEMKLQVTQRSLEESQGK------------------------------IAQLEGKLVSIEKEKIDEKSETEKLLEY 237
Cdd:pfam15921  181 SHEGVLQEIRSILVDFEEASGKkiyehdsmstihfrslgsaiskilreldteISYLKGRIFPVEDQLEALKSESQNKIEL 260
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   238 IeeISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVK--CQLLEKEKEDHVNRN--REHNE 313
Cdd:pfam15921  261 L--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMymRQLSDLESTVSQLRSelREAKR 338
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   314 NLNAEMQNLKQKFILE-------QQEREKLQQKELQIDSLLQQekeLSSSLHQKLCSFQEEMVKEKNLFEEELKQTLD-- 384
Cdd:pfam15921  339 MYEDKIEELEKQLVLAnselteaRTERDQFSQESGNLDDQLQK---LLADLHKREKELSLEKEQNKRLWDRDTGNSITid 415
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   385 ----ELDKLQQKEEQAERLVKQLEEEAKsraeelklleeklkgkeAELEKSSAAhtqatllLQEKYDSMvQSLEDVTAQF 460
Cdd:pfam15921  416 hlrrELDDRNMEVQRLEALLKAMKSECQ-----------------GQMERQMAA-------IQGKNESL-EKVSSLTAQL 470
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   461 ESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYV----RMLLDLQTKSALK---------ETEI 527
Cdd:pfam15921  471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklrsRVDLKLQELQHLKnegdhlrnvQTEC 550
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   528 KEITVSFLQKITDLQnQLKQQEEDFrKQLEDEEGRKA-EKENTTAELTEEINKWRLLYEELY-------NKTKPFQLQLD 599
Cdd:pfam15921  551 EALKLQMAEKDKVIE-ILRQQIENM-TQLVGQHGRTAgAMQVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVS 628
                          570       580
                   ....*....|....*....|....*
gi 217272802   600 AFEVEKQALLNehgAAQEQLNKIRD 624
Cdd:pfam15921  629 DLELEKVKLVN---AGSERLRAVKD 650
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
464-675 1.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   464 KALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITvsflQKITDLQN 543
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA----NEISRLEQ 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   544 Q---LKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLN 620
Cdd:TIGR02168  303 QkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802   621 KIRDSYAKLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAK--KKQSETKLQE 675
Cdd:TIGR02168  383 TLRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAELKE 437
 
Name Accession Description Interval E-value
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
16-339 2.02e-114

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 347.96  E-value: 2.02e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   16 GCAPSPGAYDVKTLEVLKGPVSFQKSQRFKQQK--ESKQNLNVDKDTTLPASARKVKSSESKKESQKND---KDLKILEK 90
Cdd:pfam15905   1 GCAPPPGSYDVKTSDALKGPVSFEKSQRFRKQKaaESQPNLNNSKDASTPATARKVKSLELKKKSQKDLkesKDQKELEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   91 EIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLE 170
Cdd:pfam15905  81 EIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKAKFSEDGTQKKMSSLSME 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  171 LMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEK 250
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  251 YKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQ 330
Cdd:pfam15905 241 YKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEE 320

                  ....*....
gi 217272802  331 QEREKLQQK 339
Cdd:pfam15905 321 QEHQKLQQK 329
HMMR_C pfam15908
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ...
553-709 1.43e-62

Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435010 [Multi-domain]  Cd Length: 157  Bit Score: 205.91  E-value: 1.43e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  553 RKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGH 632
Cdd:pfam15908   1 TKQLEMEEQRKARLENTTDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNEKGAAQEELNKLSDAYAKLLGH 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802  633 QNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKVLGIKHFDPSKAFHHESKENFALKTPLKEG 709
Cdd:pfam15908  81 QNQKQKIKHVVKLKEENSQLKQEVSKLRSQLAKEKQVQKKLQEQLNGAQGIRRFDPSKAFQHESKENFEPKTPLKEG 157
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
85-680 1.27e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 65.12  E-value: 1.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   85 LKILEKEIRVLLQERgAQDRRIQDLETELEKMEARLnaALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNL 164
Cdd:COG1196   195 LEELEKQLEKLERQA-EKAERYQELKAELRELELAL--LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  165 RILSLELMKLR-NKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISc 243
Cdd:COG1196   272 LKSELEELREElEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE- 350
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  244 asDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLK 323
Cdd:COG1196   351 --QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  324 QKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEE--ELKQTLDELDKLQQKEEQAERLVK 401
Cdd:COG1196   429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKElsSLEARLDRLEAEQRASQGVRAVLE 508
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  402 QLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQA-------------TLLLQEKYDSMVQSLEDVTAQFESYKALTA 468
Cdd:COG1196   509 ALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAvvveneevakkaiEFLKENKAGRATFLPLDRIKPLRSLKSDAA 588
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  469 SEIEDLKLENSSLQEKAAKAGKNAedVQHQILATESSNQEYVRMLLDLQTKSALKETEIKE----ITVSFLQKITDLQnq 544
Cdd:COG1196   589 PGFLGLASDLIDFDPKYEPAVRFV--LGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEpsgsITGGSRNKRSSLA-- 664
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  545 LKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRD 624
Cdd:COG1196   665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802  625 SYAKLLGHQNLKQKIKHvvKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKV 680
Cdd:COG1196   745 ELEELEEELEELQERLE--ELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
65-679 1.60e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 64.74  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   65 SARKVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIEL 144
Cdd:COG1196   270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  145 TRTNELLKSKFSENGNQKNLRILSLE------------LMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQ 212
Cdd:COG1196   350 EQLLAELEEAKEELEEKLSALLEELEelfealreelaeLEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  213 LEGKLVSIEKEKIDEKSETEKLLEYIEEiscASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNV 292
Cdd:COG1196   430 LEAELEELQTELEELNEELEELEEQLEE---LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAV 506
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  293 KCQLLEKEKE------DHVNRNREHNENLNAEMQNLKQKFILEQQE-----REKLQQKELQIDSLL-----QQEKELSSS 356
Cdd:COG1196   507 LEALESGLPGvygpvaELIKVKEKYETALEAALGNRLQAVVVENEEvakkaIEFLKENKAGRATFLpldriKPLRSLKSD 586
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  357 LHQKLCSFQEEMVKEKNLFEEELKQTLDELdKLQQKEEQAERLVKQLEEEA-----------KSRAEELKLLEEKLKGKE 425
Cdd:COG1196   587 AAPGFLGLASDLIDFDPKYEPAVRFVLGDT-LVVDDLEQARRLARKLRIKYrivtldgdlvePSGSITGGSRNKRSSLAQ 665
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  426 AELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESS 505
Cdd:COG1196   666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  506 NQEYVRMLLDLQTKSALKETEIKEITVSF------LQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINK 579
Cdd:COG1196   746 LEELEEELEELQERLEELEEELESLEEALaklkeeIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  580 WRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGH-----QNLKQKIKHVVKLKDENSQLKS 654
Cdd:COG1196   826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDElkeleEEKEELEEELRELESELAELKE 905
                         650       660
                  ....*....|....*....|....*
gi 217272802  655 EVSKLRCQLAKKKQSETKLQEELNK 679
Cdd:COG1196   906 EIEKLRERLEELEAKLERLEVELPE 930
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
66-405 1.93e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 64.35  E-value: 1.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   66 ARKVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELT 145
Cdd:COG1196   664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE 743
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  146 RTNELLKSKFSE-NGNQKNLRILSLELMKLRNKREtkmrgmmAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEK 224
Cdd:COG1196   744 EELEELEEELEElQERLEELEEELESLEEALAKLK-------EEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  225 IDEKSETEKLLEYIEEIscaSDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEEniviLSKQVEDLNVKCQLLEKEKEDH 304
Cdd:COG1196   817 ESLEQRRERLEQEIEEL---EEEIEELEEKLDELEEELEELEKELEELKEELEE----LEAEKEELEDELKELEEEKEEL 889
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  305 VNRNREHNENLnAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKE------LSSSLHQKLCSFQEEMVKEKN---LF 375
Cdd:COG1196   890 EEELRELESEL-AELKEEIEKLRERLEELEAKLERLEVELPELEEELEeeyedtLETELEREIERLEEEIEALGPvnlRA 968
                         330       340       350
                  ....*....|....*....|....*....|
gi 217272802  376 EEELKQTLDELDKLQQKEEQAERLVKQLEE 405
Cdd:COG1196   969 IEEYEEVEERYEELKSQREDLEEAKEKLLE 998
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
106-433 8.72e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 62.42  E-value: 8.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  106 IQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKsKFSENGNQKNLRILSLELMKLRNKREtKMRGM 185
Cdd:COG1196   167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKLKELRK-ELEEL 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  186 MAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSE----TEKLLEYIEEISCASDQVEKYKLDIAQLEEN 261
Cdd:COG1196   245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEllelKEEIEELEGEISLLRERLEELENELEELEER 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  262 LKEKNDEILSLKQSLEEniviLSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQEREKLQQKEL 341
Cdd:COG1196   325 LEELKEKIEALKEELEE----RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  342 QIDSLLQQEKELSSSLHQKLCSFQEE---MVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLE 418
Cdd:COG1196   401 ELKREIESLEERLERLSERLEDLKEElkeLEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480
                         330
                  ....*....|....*
gi 217272802  419 EKLKGKEAELEKSSA 433
Cdd:COG1196   481 KELSSLEARLDRLEA 495
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
79-392 1.08e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.91  E-value: 1.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    79 QKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKfsen 158
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER---- 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   159 gnQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSE----TEKL 234
Cdd:TIGR02168  749 --IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaanlRERL 826
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   235 LEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEE---NIVILSKQVEDLNVKCQLLEKEKEDHVNRNREH 311
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEElesELEALLNERASLEEALALLRSELEELSEELREL 906
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   312 NENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLhqklcsfQEEMVKEKNLFEEELKQTLDELDKLQQ 391
Cdd:TIGR02168  907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-------LEEAEALENKIEDDEEEARRRLKRLEN 979

                   .
gi 217272802   392 K 392
Cdd:TIGR02168  980 K 980
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
195-557 5.14e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 56.65  E-value: 5.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  195 KLQVTQRSLEESQGKIAQLEGKLVSIEKEKideksetEKLLEYIEEiscaSDQVEKYKLDIAQLE-ENLKEKNDEILSLK 273
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQA-------EKAERYQEL----KAELRELELALLLAKlKELRKELEELEEEL 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  274 QSLEENIVILSKQVEDLNVKCQLLEKEKEDhvnrnrehnenLNAEMQNLKQKFileQQEREKLQQKELQIDSLLQQEKEL 353
Cdd:COG1196   249 SRLEEELEELQEELEEAEKEIEELKSELEE-----------LREELEELQEEL---LELKEEIEELEGEISLLRERLEEL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  354 SSSLhqklcsfqEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSA 433
Cdd:COG1196   315 ENEL--------EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  434 AHTQATLLLQEKydsmVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRML 513
Cdd:COG1196   387 ELEAELAEIRNE----LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 217272802  514 LDLQTKSALKETEIKEITvSFLQKITDLQNQLKQQEEDFRKQLE 557
Cdd:COG1196   463 KELERELAELQEELQRLE-KELSSLEARLDRLEAEQRASQGVRA 505
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
43-678 6.57e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.22  E-value: 6.57e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    43 RFKQQKESKQNLNVDKDttlpASARKVKSSESK---KESQKNDKDLKI--LEKEIRVLLQERGAQDRRIQDLETELEKME 117
Cdd:TIGR02168  233 RLEELREELEELQEELK----EAEEELEELTAElqeLEEKLEELRLEVseLEEEIEELQKELYALANEISRLEQQKQILR 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   118 ARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSEngNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEM--- 194
Cdd:TIGR02168  309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELEEQLETlrs 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   195 KLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEE--ISCASDQVEKYKLDIAQLEENLKEKNDEILSL 272
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEEL 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   273 KQSLEEN---IVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQ------------NLKQKF----------I 327
Cdd:TIGR02168  467 REELEEAeqaLDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseliSVDEGYeaaieaalggR 546
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   328 LEQQEREKLQQKELQIDSLLQQEK------ELSSSLHQKLCSFQEEMVKEKNLFEEELK--------------------- 380
Cdd:TIGR02168  547 LQAVVVENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKdlvkfdpklrkalsyllggvl 626
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   381 --QTLDELDKLQQKEEQAERLVKQLEEEAKSR------AEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQS 452
Cdd:TIGR02168  627 vvDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   453 LEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQhQILATESSNQEYVRMLLDLQTKSALKETEIKEITV 532
Cdd:TIGR02168  707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   533 SFLQKITDLQNQLKQQEE---DFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTK--------------PFQ 595
Cdd:TIGR02168  786 ELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEelsedieslaaeieELE 865
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   596 LQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLlgHQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQE 675
Cdd:TIGR02168  866 ELIEELESELEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943

                   ...
gi 217272802   676 ELN 678
Cdd:TIGR02168  944 RLS 946
PRK12704 PRK12704
phosphodiesterase; Provisional
225-411 1.65e-07

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 54.40  E-value: 1.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 225 IDEKSETEKLLEYIEEiscASDQVEKYKLDIAQL-EENLKEKNDEILSLKQSLEenivilsKQVEDLNVKCQLLEKeked 303
Cdd:PRK12704  24 VRKKIAEAKIKEAEEE---AKRILEEAKKEAEAIkKEALLEAKEEIHKLRNEFE-------KELRERRNELQKLEK---- 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 304 hvnRNREHNENLNAEMQNLKQKfileqqeREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTL 383
Cdd:PRK12704  90 ---RLLQKEENLDRKLELLEKR-------EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159
                        170       180
                 ....*....|....*....|....*....
gi 217272802 384 deLDKLQQK-EEQAERLVKQLEEEAKSRA 411
Cdd:PRK12704 160 --LEKVEEEaRHEAAVLIKEIEEEAKEEA 186
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
99-406 1.99e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.68  E-value: 1.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    99 RGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSEngnqknLRILSLELMKLRNKR 178
Cdd:TIGR02168  672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA------LRKDLARLEAEVEQL 745
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   179 ETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVS----IEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLD 254
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEleaqIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   255 IAQLEENLKEKNDEILSLKQSLE---ENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLkqkfileQQ 331
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEelsEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-------EE 898
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   332 EREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFE---EELKQTLDELDKLQQK----EEQAERLVKQLE 404
Cdd:TIGR02168  899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlsEEYSLTLEEAEALENKieddEEEARRRLKRLE 978

                   ..
gi 217272802   405 EE 406
Cdd:TIGR02168  979 NK 980
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
66-411 2.37e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 2.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    66 ARKVKSSESKKESQKNDKDLKILEKEIRV---LLQERGAQDRRIQDLETELEKMEA-----RLNAALREKTSLSANNATL 137
Cdd:TIGR02169  170 RKKEKALEELEEVEENIERLDLIIDEKRQqleRLRREREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   138 EKQLIELTRTNELLKSKFSEngNQKNLRILSLELMKLRNKR----ETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQL 213
Cdd:TIGR02169  250 EEELEKLTEEISELEKRLEE--IEQLLEELNKKIKDLGEEEqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   214 EGKLVSI--EKEKIDEKSETEKLL--EYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEEniviLSKQVED 289
Cdd:TIGR02169  328 EAEIDKLlaEIEELEREIEEERKRrdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK----LKREINE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   290 LNVKCQLLEKEKEdhvnRNREHNENLNAEMQNLKQKfILEQQEREKLQQKELQidsllQQEKELsSSLHQKLCSFQEEMV 369
Cdd:TIGR02169  404 LKRELDRLQEELQ----RLSEELADLNAAIAGIEAK-INELEEEKEDKALEIK-----KQEWKL-EQLAADLSKYEQELY 472
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 217272802   370 KEKnlfeEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA 411
Cdd:TIGR02169  473 DLK----EEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
235-573 2.82e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.95  E-value: 2.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  235 LEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLE--ENIVILSKQVEDLNVKCQLLE-KEKEDHVNRNREH 311
Cdd:COG1196   168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEkaERYQELKAELRELELALLLAKlKELRKELEELEEE 247
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  312 NENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLcsfqEEMVKEKNLFEEELKQTLDELDKLQQ 391
Cdd:COG1196   248 LSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI----EELEGEISLLRERLEELENELEELEE 323
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  392 KEEQAERLVKQLEEEAKSRaeelKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKALTASEI 471
Cdd:COG1196   324 RLEELKEKIEALKEELEER----ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  472 EDLKLENSSLQEKAAKAGKNAEDVQHQILATESSnqeyvrmLLDLQTKSALKETEIKEITvsflQKITDLQNQLKQQEED 551
Cdd:COG1196   400 EELKREIESLEERLERLSERLEDLKEELKELEAE-------LEELQTELEELNEELEELE----EQLEELRDRLKELERE 468
                         330       340
                  ....*....|....*....|..
gi 217272802  552 FRKQLEDEEGRKAEKENTTAEL 573
Cdd:COG1196   469 LAELQEELQRLEKELSSLEARL 490
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
219-577 2.92e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.95  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  219 SIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLK---QSLEENIVILSKQVEDLNVKCQ 295
Cdd:COG1196   661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELErqlEELKRELAALEEELEQLQSRLE 740
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  296 LLEKEKEDHvnrnREHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLcsfqEEMVKEKNLF 375
Cdd:COG1196   741 ELEEELEEL----EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL----EEAERRLDAL 812
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  376 EEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQatllLQEKYDSMVQSLED 455
Cdd:COG1196   813 ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE----LEDELKELEEEKEE 888
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  456 VTAQFESYKaltaSEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALK--ETEIKEITVS 533
Cdd:COG1196   889 LEEELRELE----SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIErlEEEIEALGPV 964
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 217272802  534 FLQKITDLQnQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEI 577
Cdd:COG1196   965 NLRAIEEYE-EVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
333-684 4.32e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.56  E-value: 4.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  333 REKLQQKELQIDSLLQQEKELSSSLhQKLCSFQEemvKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAE 412
Cdd:COG1196   185 EENLERLEDLLEELEKQLEKLERQA-EKAERYQE---LKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQE 260
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  413 ELKLLEEKLKGKEAELEKssaahtqatllLQEKYDSMVQSLEDVTaqfesykaltaSEIEDLKLENSSLQEKAAKAGKNA 492
Cdd:COG1196   261 ELEEAEKEIEELKSELEE-----------LREELEELQEELLELK-----------EEIEELEGEISLLRERLEELENEL 318
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  493 EDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITV----------SFLQKITDLQNQLKQQEEDFRKQLEDEEGR 562
Cdd:COG1196   319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEakeeleeklsALLEELEELFEALREELAELEAELAEIRNE 398
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  563 KAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLlgHQNLKQKIKHV 642
Cdd:COG1196   399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL--ERELAELQEEL 476
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 217272802  643 VKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKVLGIK 684
Cdd:COG1196   477 QRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVY 518
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
170-499 5.47e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.15  E-value: 5.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   170 ELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSEtekLLEYIEEISCASDQVE 249
Cdd:TIGR02169  699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE---LKELEARIEELEEDLH 775
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   250 KYKLDIAQLEENL-KEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKedhvnrnrehnENLNAEMQNLKQKFIL 328
Cdd:TIGR02169  776 KLEEALNDLEARLsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-----------EYLEKEIQELQEQRID 844
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   329 EQQEREKLQQkelQIDSLLQQEKELSSSLhqklcsfqEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLE---E 405
Cdd:TIGR02169  845 LKEQIKSIEK---EIENLNGKKEELEEEL--------EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEaqiE 913
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   406 EAKSRAEELKLLEEKLKGKEAELEKSSAAHTQ--ATLLLQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQE 483
Cdd:TIGR02169  914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEipEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKE 993
                          330
                   ....*....|....*.
gi 217272802   484 KAAKAGKNAEDVQHQI 499
Cdd:TIGR02169  994 KRAKLEEERKAILERI 1009
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
72-388 6.19e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.18  E-value: 6.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   72 SESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELL 151
Cdd:COG1196   712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  152 KSKFsengnqKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSET 231
Cdd:COG1196   792 QEEL------EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  232 EKLLEYIEEIScasDQVEKYKLDIAQLEENLKEKNDEIlslkQSLEENIVILSKQVEDLNVKCQLLE-KEKEDHVNRNRE 310
Cdd:COG1196   866 EELEAEKEELE---DELKELEEEKEELEEELRELESEL----AELKEEIEKLRERLEELEAKLERLEvELPELEEELEEE 938
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  311 HNENLNAEMQNLKQKFILEQQEREKLQQKEL-QIDSLLQQEKELSS---SLHQKLCSFQEEMVKEKNLFEEELKQTLDEL 386
Cdd:COG1196   939 YEDTLETELEREIERLEEEIEALGPVNLRAIeEYEEVEERYEELKSqreDLEEAKEKLLEVIEELDKEKRERFKETFDKI 1018

                  ..
gi 217272802  387 DK 388
Cdd:COG1196  1019 NE 1020
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
98-411 9.44e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 52.43  E-value: 9.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   98 ERGAQDRRIQDLETELEKMEARLNAALREKtslsANNATLEKQlieltrtnellKSKFSENGNQKNLRILSLELMKLRNK 177
Cdd:pfam17380 294 EKMEQERLRQEKEEKAREVERRRKLEEAEK----ARQAEMDRQ-----------AAIYAEQERMAMERERELERIRQEER 358
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  178 REtKMRGMMAKQEGMEM-KLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCA-SDQVEKYKLDI 255
Cdd:pfam17380 359 KR-ELERIRQEEIAMEIsRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIrAEQEEARQREV 437
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  256 AQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQEREK 335
Cdd:pfam17380 438 RRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKL 517
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802  336 LQQKELQIDSLLQQEKELSSSLHQKLcsfQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAErLVKQLEEEAKSRA 411
Cdd:pfam17380 518 LEKEMEERQKAIYEEERRREAEEERR---KQQEMEERRRIQEQMRKATEERSRLEAMERERE-MMRQIVESEKARA 589
PLN02939 PLN02939
transferase, transferring glycosyl groups
95-333 3.61e-06

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 50.67  E-value: 3.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  95 LLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGnqKNLRILSLELMKL 174
Cdd:PLN02939 161 ILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLS--KELDVLKEENMLL 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 175 RNK-----------RETKMRGMMAKQE--GMEMKLQVTQRSLEESQGKIAqlegKLVSIEKEKIDEKSETEKLLeyieeI 241
Cdd:PLN02939 239 KDDiqflkaelievAETEERVFKLEKErsLLDASLRELESKFIVAQEDVS----KLSPLQYDCWWEKVENLQDL-----L 309
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 242 SCASDQVEKYKLDIAQlEENLKEKNDEilsLKQSLEENIV--ILSKQVEDLNVKCQLLEK--EKEDH-VNRNREHNENLN 316
Cdd:PLN02939 310 DRATNQVEKAALVLDQ-NQDLRDKVDK---LEASLKEANVskFSSYKVELLQQKLKLLEErlQASDHeIHSYIQLYQESI 385
                        250
                 ....*....|....*..
gi 217272802 317 AEMQNLKQKFILEQQER 333
Cdd:PLN02939 386 KEFQDTLSKLKEESKKR 402
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
72-595 3.70e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.45  E-value: 3.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  72 SESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLET---ELEKMEARLNAALREKTSLSANNATLEKQLIELTRTN 148
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 149 ELLKSKFSENGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEgKLVSIEKEKIDEK 228
Cdd:PRK03918 276 EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRL 354
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 229 SETEKLLEYIEEISCASDQVEKYKLDIAQLE--------ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKE 300
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTpeklekelEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 301 KEDHVNRNR----EHNENL----NAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELsSSLHQKLCSFQEEMVKEK 372
Cdd:PRK03918 435 KGKCPVCGRelteEHRKELleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL-IKLKELAEQLKELEEKLK 513
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 373 NLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQS 452
Cdd:PRK03918 514 KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 453 LEDVTAQFESYKAL--TASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEI 530
Cdd:PRK03918 594 LKELEPFYNEYLELkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 217272802 531 TVSFLQKITDlqnQLKQQEEDFRKQLEDEEGRKAEKENTTAELtEEINKWRLLYEELYNKTKPFQ 595
Cdd:PRK03918 674 ELAGLRAELE---ELEKRREEIKKTLEKLKEELEEREKAKKEL-EKLEKALERVEELREKVKKYK 734
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
193-577 4.16e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 4.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   193 EMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEeiscasdQVEKYKLDIAQLEENLKEKNDEILSL 272
Cdd:TIGR02168  669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-------QLRKELEELSRQISALRKDLARLEAE 741
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   273 KQSLEENIVILSKQVEDLNVKCQLLEKEKEDhvnrNREHNENLNAEMQNLKQKFileQQEREKLQQKELQIDSLLQQEKE 352
Cdd:TIGR02168  742 VEQLEERIAQLSKELTELEAEIEELEERLEE----AEEELAEAEAEIEELEAQI---EQLKEELKALREALDELRAELTL 814
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   353 LSSSLHQKLcSFQEEMVKEKNLFEEELKQTLDELDKLqqkEEQAERLVKQLEEEAKSRAeelklleeKLKGKEAELEKSS 432
Cdd:TIGR02168  815 LNEEAANLR-ERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIE--------ELESELEALLNER 882
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   433 AAHTQATLLLQEKYDSMVQSLEDVTAQF----ESYKALTAS------EIEDLKLENSSLQEKAAKAGK-NAEDVQHQILA 501
Cdd:TIGR02168  883 ASLEEALALLRSELEELSEELRELESKRselrRELEELREKlaqlelRLEGLEVRIDNLQERLSEEYSlTLEEAEALENK 962
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802   502 TESSNQEyvrmlldLQTKSALKETEIKEITVSFLQKITDLQnQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEI 577
Cdd:TIGR02168  963 IEDDEEE-------ARRRLKRLENKIKELGPVNLAAIEEYE-ELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA 1030
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
375-681 4.62e-06

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 50.10  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  375 FEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKsRAEELKLLEEKLKGKEAELEKSSAAhtqatlLLQEKYDSMVQSLE 454
Cdd:COG1196   170 YKERKEEAERKLERTEENLERLEDLLEELEKQLE-KLERQAEKAERYQELKAELRELELA------LLLAKLKELRKELE 242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  455 DVTAQFESYKAL---TASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEIt 531
Cdd:COG1196   243 ELEEELSRLEEEleeLQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL- 321
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  532 vsfLQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNE 611
Cdd:COG1196   322 ---EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  612 HGAAQEQLNKIRDSYAKLLG------------HQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNK 679
Cdd:COG1196   399 LEELKREIESLEERLERLSErledlkeelkelEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478

                  ..
gi 217272802  680 VL 681
Cdd:COG1196   479 LE 480
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
279-592 5.20e-06

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 50.10  E-value: 5.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  279 NIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLH 358
Cdd:COG1196   661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLE 740
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  359 ------QKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEE----------AKSRAEELKLLEEKLK 422
Cdd:COG1196   741 eleeelEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEleeleeeleeAERRLDALERELESLE 820
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  423 GKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKAL---TASEIEDLKLENSSLQEKAAKAGKNAEDVQHQI 499
Cdd:COG1196   821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEleeLEAEKEELEDELKELEEEKEELEEELRELESEL 900
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  500 LATESSNQEYVRMLLDLQTKSALKETEIKEITVS-----FLQKITDLQNQLKQQEEDFRK----------QLEDEEGRKA 564
Cdd:COG1196   901 AELKEEIEKLRERLEELEAKLERLEVELPELEEEleeeyEDTLETELEREIERLEEEIEAlgpvnlraieEYEEVEERYE 980
                         330       340
                  ....*....|....*....|....*...
gi 217272802  565 EKENTTAELTEEINKWRLLYEELYNKTK 592
Cdd:COG1196   981 ELKSQREDLEEAKEKLLEVIEELDKEKR 1008
PRK12704 PRK12704
phosphodiesterase; Provisional
326-494 5.68e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 49.39  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 326 FILEQQEREKLQQKELQIDSLLQQ-EKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLE 404
Cdd:PRK12704  23 FVRKKIAEAKIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 405 EEAKSRAEELKLLEEKLKGKEAELEKssaahtqatllLQEKYDSMVQSLEDvtaQFESYKALTASEIEDLKLEN--SSLQ 482
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEK-----------KEEELEELIEEQLQ---ELERISGLTAEEAKEILLEKveEEAR 168
                        170
                 ....*....|..
gi 217272802 483 EKAAKAGKNAED 494
Cdd:PRK12704 169 HEAAVLIKEIEE 180
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
366-680 5.89e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.68  E-value: 5.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   366 EEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEE-EAKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQE 444
Cdd:TIGR02169  183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   445 KYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKE 524
Cdd:TIGR02169  263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   525 TEIKEITVSFLQKITDLQNqLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEInkwrllyEELYNKTKPFQLQLDAFEVE 604
Cdd:TIGR02169  343 REIEEERKRRDKLTEEYAE-LKEELEDLRAELEEVDKEFAETRDELKDYREKL-------EKLKREINELKRELDRLQEE 414
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802   605 KQALLNEHGAAQEQLNKIRDSYAKLlgHQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKV 680
Cdd:TIGR02169  415 LQRLSEELADLNAAIAGIEAKINEL--EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
73-611 9.18e-06

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 48.99  E-value: 9.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  73 ESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLK 152
Cdd:COG0419  246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK 325
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 153 SKFSE-NGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEgklVSIEKEKIDEKSET 231
Cdd:COG0419  326 SLEERlEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLE---EAIQELKEELAELS 402
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 232 EKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREH 311
Cdd:COG0419  403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELE 482
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 312 NENLNAEMQNLKQKFILEQQERE---KLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQtldeldK 388
Cdd:COG0419  483 LEELEEELSREKEEAELREEIEElekELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQ------Q 556
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 389 LQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSaahtqatllLQEKYDSMVQSLEDVTAQFESYKALTA 468
Cdd:COG0419  557 LKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKK---------KLKELEERLSQLEELLQSLELSEAENE 627
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 469 SEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKITDLQNQL--- 545
Cdd:COG0419  628 LEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELeel 707
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802 546 KQQEEDFRKQLEDEEGRKAEKENTTAELtEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNE 611
Cdd:COG0419  708 LKKLGEIEQLIEELESRKAELEELKKEL-EKLEKALELLEELREKLGKAGLRADILRNLLAQIEAE 772
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
104-677 1.30e-05

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 48.60  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 104 RRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENG------NQKNLRILSLELMKLRNK 177
Cdd:COG0419  178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEiealeeRLAELEEEKERLEELKAR 257
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 178 RETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDE---KSETEKLLEYIEEISCASDQVEKYKLD 254
Cdd:COG0419  258 LLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELeglRALLEELEELLEKLKSLEERLEKLEEK 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 255 IAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQERE 334
Cdd:COG0419  338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 335 KLQQKELQIDSLLQQEKELSSSLHQKlcsfqeemvkeknlfeEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEEL 414
Cdd:COG0419  418 ELEELERELEELEEEIKKLEEQINQL----------------ESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYEL 481
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 415 KLLEEKLKGKEAELEKSsaahtqatllLQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAED 494
Cdd:COG0419  482 ELEELEEELSREKEEAE----------LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK 551
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 495 VQHQILATESSNQEYvrmlLDLQTKSALKETEIKEITVSFLQKITDLQNQLKQQEEDFRKQLedeegRKAEKENTTAELT 574
Cdd:COG0419  552 LQLQQLKEELRQLED----RLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERL-----SQLEELLQSLELS 622
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 575 EEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGHQNLKQKIKHVVKLKDENSQLKS 654
Cdd:COG0419  623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLRE 702
                        570       580
                 ....*....|....*....|...
gi 217272802 655 EVSKLRCQLAKKKQSETKLQEEL 677
Cdd:COG0419  703 ELEELLKKLGEIEQLIEELESRK 725
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
70-304 1.58e-05

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 48.13  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  70 KSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNE 149
Cdd:COG1269   44 KELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLS 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 150 LLKSKFSENGNQKN-LRILS---LELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKI 225
Cdd:COG1269  124 ELDEELEDLEDLLEeLEPLAyldFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDL 203
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 226 DEKSET-EKLLEYIEEISCASDQVEKYkldIAQLEENLKEKNDEILSLKQSLEEnivILSKQVEDLNVKCQLLEKEKEDH 304
Cdd:COG1269  204 DKVSKIlNELGFELYEVPEFDGGPSEL---ISELEEVIAEIQDELESLRSELEA---LAEKIAEELLAVREILEIEKALG 277
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
164-488 2.01e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.14  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   164 LRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEIsc 243
Cdd:TIGR02169  193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEI-- 270
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   244 asdqvekyKLDIAQLEENLKEK-NDEILSLKQSLEEniviLSKQVEdlnvKCQLLEKEKEDHVNRNREHNENLNAEMQNL 322
Cdd:TIGR02169  271 --------EQLLEELNKKIKDLgEEEQLRVKEKIGE----LEAEIA----SLERSIAEKERELEDAEERLAKLEAEIDKL 334
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   323 KQKfiLEQQEREkLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEeLKQTLDELDKLQQKEEQAERLVKQ 402
Cdd:TIGR02169  335 LAE--IEELERE-IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE-LKDYREKLEKLKREINELKRELDR 410
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   403 LEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKALTAsEIEDLKLENSSLQ 482
Cdd:TIGR02169  411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQ 489

                   ....*.
gi 217272802   483 EKAAKA 488
Cdd:TIGR02169  490 RELAEA 495
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
29-303 2.01e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.14  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    29 LEVLKGPVSFQKSQRFKQQKESKQNLNVDKDTTLPASARKVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQD 108
Cdd:TIGR02169  683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   109 LETE--------------LEKMEARLNAAL-----REKTSLSANNATLEKQLIEL-TRTNELLKSKFSENGNQKNLRILS 168
Cdd:TIGR02169  763 LEARieeleedlhkleeaLNDLEARLSHSRipeiqAELSKLEEEVSRIEARLREIeQKLNRLTLEKEYLEKEIQELQEQR 842
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   169 LELMKLRNKREtkmrgmmAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQV 248
Cdd:TIGR02169  843 IDLKEQIKSIE-------KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 217272802   249 EKYKLDIAQLEENLKEKNDEILSLKQSLEEnIVILSKQVEDLNVKCQLLEKEKED 303
Cdd:TIGR02169  916 RKRLSELKAKLEALEEELSEIEDPKGEDEE-IPEEELSLEDVQAELQRVEEEIRA 969
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
197-568 3.29e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 3.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   197 QVTQRSLEESQGKIAQLEGKLVSIEK--EKIDEKSE-TEKLLEYIEEISCAsdQVEKYKLDIAQLEENLKEKNDEILSLK 273
Cdd:TIGR02168  175 KETERKLERTRENLDRLEDILNELERqlKSLERQAEkAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAE 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   274 Q---SLEENIVILSKQVEDLNVKCQLLEKEKEDhvnrnrehnenLNAEMQNLKQKfileqqereklqqkelqIDSLLQQE 350
Cdd:TIGR02168  253 EeleELTAELQELEEKLEELRLEVSELEEEIEE-----------LQKELYALANE-----------------ISRLEQQK 304
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   351 KELSSSLHQklcsfqeemvkeknlFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEA---E 427
Cdd:TIGR02168  305 QILRERLAN---------------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleE 369
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   428 LEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKAltasEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQ 507
Cdd:TIGR02168  370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA----RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 217272802   508 EyvRMLLDLQTKSALKETEIKEITVSFLQKITDLQnQLKQQEEDFRKQLEDEEGRKAEKEN 568
Cdd:TIGR02168  446 E--EELEELQEELERLEEALEELREELEEAEQALD-AAERELAQLQARLDSLERLQENLEG 503
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
196-439 4.43e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 46.64  E-value: 4.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 196 LQVTQRSLEESQGKIAQLEGKLvsieKEKIDEKSETEKLLEYIE-EISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQ 274
Cdd:COG4942   33 AAADDKQLKQIQKEIAALEKKI----REQQDQRAKLEKQLKSLEtEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 275 SLEENIVILSKQVEDL-----NVKCQLLEKEKE-----------DHVNRNR----EHNENLNAEMQNLKQKFILEQQERE 334
Cdd:COG4942  109 QEREQRRRLAEQLAALqrsgrNPPPALLVSPEDaqrsvrlaiyyGALNPARaeriDALKATLKQLAAVRAEIAAEQAELT 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 335 KL---QQKELQIDSLLQQEKElssSLHQKLcsfqeemvkeknlfEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRA 411
Cdd:COG4942  189 TLlseQRAQQAKLAQLLEERK---KTLAQL--------------NSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251
                        250       260
                 ....*....|....*....|....*...
gi 217272802 412 EELKLLEEKLKGKEAELEKSSAAHTQAT 439
Cdd:COG4942  252 EAAAAAEAAAARARAAEAKRTGETYKPT 279
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
108-624 4.94e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 47.02  E-value: 4.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   108 DLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSkfsengnqknlriLSLELMKLRNKRETKMRGMMA 187
Cdd:pfam15921  114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC-------------LKEDMLNDSNTQIEQLRKMML 180
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   188 KQEGMEMKLQVTQRSLEESQGK------------------------------IAQLEGKLVSIEKEKIDEKSETEKLLEY 237
Cdd:pfam15921  181 SHEGVLQEIRSILVDFEEASGKkiyehdsmstihfrslgsaiskilreldteISYLKGRIFPVEDQLEALKSESQNKIEL 260
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   238 IeeISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVK--CQLLEKEKEDHVNRN--REHNE 313
Cdd:pfam15921  261 L--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMymRQLSDLESTVSQLRSelREAKR 338
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   314 NLNAEMQNLKQKFILE-------QQEREKLQQKELQIDSLLQQekeLSSSLHQKLCSFQEEMVKEKNLFEEELKQTLD-- 384
Cdd:pfam15921  339 MYEDKIEELEKQLVLAnselteaRTERDQFSQESGNLDDQLQK---LLADLHKREKELSLEKEQNKRLWDRDTGNSITid 415
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   385 ----ELDKLQQKEEQAERLVKQLEEEAKsraeelklleeklkgkeAELEKSSAAhtqatllLQEKYDSMvQSLEDVTAQF 460
Cdd:pfam15921  416 hlrrELDDRNMEVQRLEALLKAMKSECQ-----------------GQMERQMAA-------IQGKNESL-EKVSSLTAQL 470
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   461 ESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYV----RMLLDLQTKSALK---------ETEI 527
Cdd:pfam15921  471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklrsRVDLKLQELQHLKnegdhlrnvQTEC 550
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   528 KEITVSFLQKITDLQnQLKQQEEDFrKQLEDEEGRKA-EKENTTAELTEEINKWRLLYEELY-------NKTKPFQLQLD 599
Cdd:pfam15921  551 EALKLQMAEKDKVIE-ILRQQIENM-TQLVGQHGRTAgAMQVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVS 628
                          570       580
                   ....*....|....*....|....*
gi 217272802   600 AFEVEKQALLNehgAAQEQLNKIRD 624
Cdd:pfam15921  629 DLELEKVKLVN---AGSERLRAVKD 650
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
76-680 6.74e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.21  E-value: 6.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  76 KESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLkskf 155
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI---- 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 156 sengNQKNLRILSLElmklrnkretkmrgmmAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKsETEKLL 235
Cdd:PRK03918 241 ----EELEKELESLE----------------GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLS 299
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 236 EYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEE---NIVILSKQVEDLNVKCQLLEKEKEDHVNRNR--- 309
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEElkkKLKELEKRLEELEERHELYEEAKAKKEELERlkk 379
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 310 ----EHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQK-----LCSFQEEMVKEKNLFEE--- 377
Cdd:PRK03918 380 rltgLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEyta 459
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 378 ELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAE-------LEKSSAAHTQATLLLQE--KYDS 448
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEeklkkynLEELEKKAEEYEKLKEKliKLKG 539
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 449 MVQSLED---VTAQFESYKALTASEIEDLKLENSSLQEKAAKAG-KNAEDVQHQILATESSNQEYVRM------LLDLQT 518
Cdd:PRK03918 540 EIKSLKKeleKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELkdaekeLEREEK 619
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 519 KSALKETEIKEITVSFLQKITDLQnQLKQQEEDFRKQLEDEEGRKAEKENTtaELTEEINKWRLLYEELYNKTKPFQLQL 598
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLE-ELRKELEELEKKYSEEEYEELREEYL--ELSRELAGLRAELEELEKRREEIKKTL 696
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 599 DAFEVEKQallnEHGAAQEQLNKIRDSYAKLlghQNLKQKIKHVVKLKDENSQLKSE--VSKLRCQLAKKKQSETKLQEE 676
Cdd:PRK03918 697 EKLKEELE----EREKAKKELEKLEKALERV---EELREKVKKYKALLKERALSKVGeiASEIFEELTEGKYSGVRVKAE 769

                 ....
gi 217272802 677 LNKV 680
Cdd:PRK03918 770 ENKV 773
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
73-407 6.79e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.19  E-value: 6.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  73 ESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLK 152
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR 327
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 153 SKFSE--------NGNQKNLRILSLELmklrnkrETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEK 224
Cdd:PRK02224 328 DRLEEcrvaaqahNEEAESLREDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 225 IDEKSETEKLLEYIEEISCASDQVEKyklDIAQLEENLKEKNDEILSLKQSLEENivilskqvedlnvKCQLLEKEKED- 303
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELRE---REAELEATLRTARERVEEAEALLEAG-------------KCPECGQPVEGs 464
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 304 -HVNR---NREHNENLNAEMQNLKqkfileqQEREKLQQKELQIDSLLQQEKELSSSLHQ-----KLCSFQEEMVKEKNL 374
Cdd:PRK02224 465 pHVETieeDRERVEELEAELEDLE-------EEVEEVEERLERAEDLVEAEDRIERLEERredleELIAERRETIEEKRE 537
                        330       340       350
                 ....*....|....*....|....*....|....
gi 217272802 375 FEEELKQTLDELD-KLQQKEEQAERLVKQLEEEA 407
Cdd:PRK02224 538 RAEELRERAAELEaEAEEKREAAAEAEEEAEEAR 571
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
106-301 1.22e-04

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 45.30  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 106 IQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELtrtnELLKSkfsengnqknlriLSLELMKLRNKRETKMR-G 184
Cdd:PRK05771  88 IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL----EPWGN-------------FDLDLSLLLGFKYVSVFvG 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 185 MMAKQEGMEMKLQVTQRSLEEsqgkIAQLEGK---LVSIEKEKIDEKSETEKLLEY----IEEISCASDQVEKYKLDIAQ 257
Cdd:PRK05771 151 TVPEDKLEELKLESDVENVEY----ISTDKGYvyvVVVVLKELSDEVEEELKKLGFerleLEEEGTPSELIREIKEELEE 226
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 217272802 258 LEENLKEKNDEILSLKQSLEENIV----ILSKQVEDLNVKCQLLEKEK 301
Cdd:PRK05771 227 IEKERESLLEELKELAKKYLEELLalyeYLEIELERAEALSKFLKTDK 274
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
68-406 1.46e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 45.03  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  68 KVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRT 147
Cdd:PRK02224 334 RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 148 NELLKSKFSE-NGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEkekiD 226
Cdd:PRK02224 414 LEELREERDElREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLE----E 489
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 227 EKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEEniviLSKQVEDLNVKCQllekEKEDHVN 306
Cdd:PRK02224 490 EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEE----LRERAAELEAEAE----EKREAAA 561
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 307 RNREHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSsLHQKLCSFQE------EMVKEKNLFEEELK 380
Cdd:PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIER-LREKREALAElnderrERLAEKRERKRELE 640
                        330       340
                 ....*....|....*....|....*...
gi 217272802 381 QTLDE--LDKLQQKEEQAERLVKQLEEE 406
Cdd:PRK02224 641 AEFDEarIEEAREDKERAEEYLEQVEEK 668
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
222-572 1.55e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 1.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   222 KEKIDEKSETEKLLE-YIEEISCASDQVEKYKLDIAQLEENLKEKND----EILSLKQSLEENIVILSKQVEDLNVKCQL 296
Cdd:TIGR02169  176 LEELEEVEENIERLDlIIDEKRQQLERLRREREKAERYQALLKEKREyegyELLKEKEALERQKEAIERQLASLEEELEK 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   297 LEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQE-REKLQQKELQIDSLLQQEKELSSSlhqklcsfQEEMVKEKNLF 375
Cdd:TIGR02169  256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERE--------LEDAEERLAKL 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   376 EEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLkgkeAELEKSSAAhtqatllLQEKYDSMVQSLED 455
Cdd:TIGR02169  328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL----EEVDKEFAE-------TRDELKDYREKLEK 396
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   456 VTaqfesykaltaSEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITvsfl 535
Cdd:TIGR02169  397 LK-----------REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA---- 461
                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 217272802   536 QKITDLQNQLKQQEEDFRKqLEDEEgRKAEKENTTAE 572
Cdd:TIGR02169  462 ADLSKYEQELYDLKEEYDR-VEKEL-SKLQRELAEAE 496
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
313-578 1.85e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.05  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   313 ENLNAEMQNLKQKFILEQQEREKLQQKELQID---SLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKL 389
Cdd:TIGR02168  694 AELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   390 QQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAEL-----------------EKSSAAHTQATLLLQEKYDSMVQS 452
Cdd:TIGR02168  774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneeaanlrerleslERRIAATERRLEDLEEQIEELSED 853
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   453 LEDVTAQFESYKALTA---SEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKE 529
Cdd:TIGR02168  854 IESLAAEIEELEELIEeleSELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 217272802   530 ITVSFLQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEIN 578
Cdd:TIGR02168  934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
330-577 2.35e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 2.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   330 QQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQ---EEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEE 406
Cdd:TIGR02169  687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   407 AKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKY----DSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQ 482
Cdd:TIGR02169  767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   483 EKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITvSFLQKITDLQNQLKQQEEDFRKQLEDEEGR 562
Cdd:TIGR02169  847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE-AQLRELERKIEELEAQIEKKRKRLSELKAK 925
                          250
                   ....*....|....*
gi 217272802   563 KAEKENTTAELTEEI 577
Cdd:TIGR02169  926 LEALEEELSEIEDPK 940
PTZ00121 PTZ00121
MAEBL; Provisional
66-708 2.76e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 2.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   66 ARKVKSSESKKESQKNDkDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELT 145
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAE-DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA 1235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  146 RTNELLKSKFSENGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKiaqlEGKLVSIEKEKI 225
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE----EKKKADEAKKKA 1311
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  226 DEKSETEKLLEYIEEiscasdqvEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHV 305
Cdd:PTZ00121 1312 EEAKKADEAKKKAEE--------AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  306 NRNREHNEnlnaEMQNLKQKFILEQQEREKLQQKElqidsllqQEKELSSSLHQKlcsfQEEMVKEKNLFEE-ELKQTLD 384
Cdd:PTZ00121 1384 KKKAEEKK----KADEAKKKAEEDKKKADELKKAA--------AAKKKADEAKKK----AEEKKKADEAKKKaEEAKKAD 1447
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  385 ELDKLQQKEEQAERLVKQLEEEAKS---RAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQfE 461
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKAdeaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD-E 1526
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  462 SYKALTASEIEDLKlenSSLQEKAAKAGKNAEDVQ--HQILATESSNQEYVRMLLDLQTKSALKETE---IKEITVSFLQ 536
Cdd:PTZ00121 1527 AKKAEEAKKADEAK---KAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEearIEEVMKLYEE 1603
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  537 KITDLQNQLKQQEEDFRK--QLEDEEGRKAEKENTTAELTEEINKW-RLLYEELYNKTKPFQLQLDAFEVEKQA-----L 608
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKaeELKKAEEEKKKVEQLKKKEAEEKKKAeELKKAEEENKIKAAEEAKKAEEDKKKAeeakkA 1683
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  609 LNEHGAAQEQLNKIRDSYAK---LLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQE-ELNKVLGIK 684
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKaeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeEKKKIAHLK 1763
                         650       660
                  ....*....|....*....|....
gi 217272802  685 HFDPSKAFHHESKENFALKTPLKE 708
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKEAVIEEELDE 1787
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
85-580 2.79e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.19  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    85 LKILEKEIRVLLQERGAQDRRIQ---DLETELEKMEARLNAALREKTSL---SANNATLEKQ-LIELTRTNELLKSKFSE 157
Cdd:TIGR00618  395 LQSLCKELDILQREQATIDTRTSafrDLQGQLAHAKKQQELQQRYAELCaaaITCTAQCEKLeKIHLQESAQSLKEREQQ 474
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   158 NGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQG---KIAQLEGKLVSIEKEKIDEKSETEKL 234
Cdd:TIGR00618  475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPltrRMQRGEQTYAQLETSEEDVYHQLTSE 554
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   235 LEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNEN 314
Cdd:TIGR00618  555 RKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHL 634
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   315 LNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEE 394
Cdd:TIGR00618  635 QQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   395 QAERLVKQLEEEAKSRaeelklleeklkgkEAELEKSSAAHTQATLLLQEKYDSMVQSLEDvtAQFESYKALTASEIEDL 474
Cdd:TIGR00618  715 EYDREFNEIENASSSL--------------GSDLAAREDALNQSLKELMHQARTVLKARTE--AHFNNNEEVTAALQTGA 778
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   475 KLENssLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKITDLQNQLKQQEEdfrk 554
Cdd:TIGR00618  779 ELSH--LAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLL---- 852
                          490       500
                   ....*....|....*....|....*.
gi 217272802   555 QLEDEEGRKAEKENTTAELTEEINKW 580
Cdd:TIGR00618  853 KYEECSKQLAQLTQEQAKIIQLSDKL 878
PTZ00121 PTZ00121
MAEBL; Provisional
39-494 3.16e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   39 QKSQRFKQQKESKQNLNVDKDTTLPASAR-KVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKME 117
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEeAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  118 ARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLELMK---LRNKRETKMRGMMAKQEGMEM 194
Cdd:PTZ00121 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKadeAKKKAEEKKKADEAKKKAEEA 1443
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  195 KLQVTQRSLEESQGKIAQL-----EGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLK-EKNDE 268
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAkkkaeEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaEEAKK 1523
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  269 ILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEmqnlKQKFILEQQEREKLQQKELQIDSLLQ 348
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE----EDKNMALRKAEEAKKAEEARIEEVMK 1599
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  349 QEKELSSSLHQKLCSFQEEMVKEKNLF-EEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAE 427
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802  428 LEKSSAAHTQATLLLQEKYDSMVQSledvtAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAED 494
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKA-----EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
239-406 3.21e-04

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 44.07  E-value: 3.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  239 EEISCASDQVEKYKLDIAQL-----EENLKEKNDEILSLKQSLEENIviLSKQVEDLNVKcqllekEKEDHVNRNREHNE 313
Cdd:pfam06160 237 KEIQQLEEQLEENLALLENLeldeaEEALEEIEERIDQLYDLLEKEV--DAKKYVEKNLP------EIEDYLEHAEEQNK 308
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  314 NLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQK------LCSFQEEMVKEKNLFEEELKQTLDELD 387
Cdd:pfam06160 309 ELKEELERVQQSYTLNENELERVRGLEKQLEELEKRYDEIVERLEEKevayseLQEELEEILEQLEEIEEEQEEFKESLQ 388
                         170
                  ....*....|....*....
gi 217272802  388 KLQQKEEQAERLVKQLEEE 406
Cdd:pfam06160 389 SLRKDELEAREKLDEFKLE 407
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
74-288 6.01e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 43.15  E-value: 6.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  74 SKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSA---NNATLEKQLIELTRTNEL 150
Cdd:COG2433  420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRArdrRIERLEKELEEKKKRVEE 499
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 151 LKSKFSENgnqknlrilslelmklrnkreTKMRGMMAKQEGMEMKL--QVTQRSLEESQGKIAQLEGKLVSIEKEKIDEK 228
Cdd:COG2433  500 LERKLAEL---------------------RKMRKLELSGKGTPVKVveKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGA 558
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 217272802 229 SETEKLLE-------YIEEISCASDQV-EKYKLDIAQLEENLKEKNDEILSLK-QSLEENIVILSKQVE 288
Cdd:COG2433  559 RTAEELIDkkpraiiRGEEMSHAAAEEfFKNEIPVLPEGDVQIIRLDEFAVVDsEELRRAIEEWKKRFE 627
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
374-619 6.66e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 42.70  E-value: 6.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 374 LFEEELKQTLDELDKLQQKEEQAERLVKQLEEE----------AKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQ 443
Cdd:COG4372   64 LLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEkraaetereaARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 444 EKYDSMVQSLEDVTAQFE-----------SYKALTASeIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRM 512
Cdd:COG4372  144 KQAQDLQTRLKTLAEQRRqleaqaqslqaSQKQLQAS-ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 513 LLDLQTKSALKETEIKeitvsflqKITDLQNQLKQQEEDFRKQleDEEGRKAEKENTTAE-LTEEINKWRLLYEELYNKT 591
Cdd:COG4372  223 AAAAQQTAQAIQQRDA--------QISQKAQQIAARAEQIRER--ERQLQRLETAQARLEqEVAQLEAYYQAYVRLRQQA 292
                        250       260
                 ....*....|....*....|....*....
gi 217272802 592 KPFQL-QLDAFEVEKQALLNEHGAAQEQL 619
Cdd:COG4372  293 AATQRgQVLAGAAQRVAQAQAQAQAQAQL 321
MscK COG3264
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
441-636 1.06e-03

Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225803 [Multi-domain]  Cd Length: 835  Bit Score: 42.37  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 441 LLQEKYDSMVQSLEDVTAQFESYKALTASEIedlkleNSSLQEKAAKAGKNAEDVQHQILATESSNQEyVRMLLDLQTKS 520
Cdd:COG3264    8 VLQELLQSRRELLTAESAQLEAALQLLQEAV------NSKRQEEAEPAAEEAELQAELIQQELAINDQ-LSQALNQQTER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 521 ALKETEIKEITVSFLQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEinkWRLLYEELYNKTKPFQLQLDA 600
Cdd:COG3264   81 LNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQ---EQFEVTQERDALQAEKAYINA 157
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 217272802 601 FEVEKQALLNEhgaAQEQLNKIRDSYAKLLGHQNLK 636
Cdd:COG3264  158 LEGQAEQLTAE---VRDILDQILDTRRELLNSLLSQ 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
464-675 1.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   464 KALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITvsflQKITDLQN 543
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA----NEISRLEQ 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   544 Q---LKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLN 620
Cdd:TIGR02168  303 QkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 217272802   621 KIRDSYAKLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAK--KKQSETKLQE 675
Cdd:TIGR02168  383 TLRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAELKE 437
PRK11281 PRK11281
mechanosensitive channel MscK;
95-395 1.40e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.21  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   95 LLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIElTRTNELLKSKFSENGN-----QKNLRILSL 169
Cdd:PRK11281   71 LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLS-TLSLRQLESRLAQTLDqlqnaQNDLAEYNS 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  170 ELMKLRNKRETkmrgmmakqegmemklqvTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLeyieeiscasdQVE 249
Cdd:PRK11281  150 QLVSLQTQPER------------------AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLL-----------QAE 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  250 KYKLDiAQLEENlkekndeilslKQSLEEN---IVILSKQVEDLNVKCQLLEKEKEDhvnrnreHNENLNAEMQNLKQKF 326
Cdd:PRK11281  201 QALLN-AQNDLQ-----------RKSLEGNtqlQDLLQKQRDYLTARIQRLEHQLQL-------LQEAINSKRLTLSEKT 261
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 217272802  327 ILEQQEREKLQQkeLQIDSLLQQEKELSSSLHQKLCSFQEEMvkeKNLFEEEL--KQTLDELDKLQQK-EEQ 395
Cdd:PRK11281  262 VQEAQSQDEAAR--IQANPLVAQELEINLQLSQRLLKATEKL---NTLTQQNLrvKNWLDRLTQSERNiKEQ 328
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
44-576 2.31e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 41.25  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   44 FKQQKESKQNLNVDKDTTLPASARKVKSSESKKESQKNDKdlkilEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAa 123
Cdd:pfam05483 199 FEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDK-----EKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ- 272
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  124 LREKTSLSANN-ATLEKQLIELTRTNE-----LLKSKFSENGNQKNLRILSLELMKLRNKRETKMRGMMAKQEG------ 191
Cdd:pfam05483 273 LEEKTKLQDENlKELIEKKDHLTKELEdikmsLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAhsfvvt 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  192 --------MEMKLQVTQRSLE--ESQGKIAQLEGKLVSIEKEKIDE-KSETEKLLEYIEEISCASDQVEKYKLDIAQLEE 260
Cdd:pfam05483 353 efeattcsLEELLRTEQQRLEknEDQLKIITMELQKKSSELEEMTKfKNNKEVELEELKKILAEDEKLLDEKKQFEKIAE 432
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  261 NLKEKNDEILSLKQSLEENIVIL--------------SKQVEDLNVKCQ---LLEKEKEDHVNRNREHNENLNAEMQNLK 323
Cdd:pfam05483 433 ELKGKEQELIFLLQAREKEIHDLeiqltaiktseehyLKEVEDLKTELEkekLKNIELTAHCDKLLLENKELTQEASDMT 512
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  324 QKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQL 403
Cdd:pfam05483 513 LELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL 592
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  404 EEEA---KSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSS 480
Cdd:pfam05483 593 ENKCnnlKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEK 672
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  481 LQEKAAKAGKNAEDV-----------QHQILA----TESSNQEYVRMLLDLQTKSAL---KETEIKEITVSFLQKITDLQ 542
Cdd:pfam05483 673 LLEEVEKAKAIADEAvklqkeidkrcQHKIAEmvalMEKHKHQYDKIIEERDSELGLyknKEQEQSSAKAALEIELSNIK 752
                         570       580       590
                  ....*....|....*....|....*....|....
gi 217272802  543 NQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEE 576
Cdd:pfam05483 753 AELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
73-342 4.74e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 40.09  E-value: 4.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  73 ESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELtrtnellk 152
Cdd:COG4942   35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL-------- 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 153 skfsENGNQKNLRILSLELMKLRnkretkmrgMMAKQEGMEMKLqvtqrSLEESQGK--IAQLEGKLVSIEKEKIDEKSE 230
Cdd:COG4942  107 ----EVQEREQRRRLAEQLAALQ---------RSGRNPPPALLV-----SPEDAQRSvrLAIYYGALNPARAERIDALKA 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 231 TEKLLEYIEeiscASDQVEKykldiAQLEENLKEKNDEILSLKQSLEENivilSKQVEDLNVKCQLLEKEKEDH-VNRNR 309
Cdd:COG4942  169 TLKQLAAVR----AEIAAEQ-----AELTTLLSEQRAQQAKLAQLLEER----KKTLAQLNSELSADQKKLEELrANESR 235
                        250       260       270
                 ....*....|....*....|....*....|...
gi 217272802 310 EHNENLNAEMQNLKQKFILEQQEREKLQQKELQ 342
Cdd:COG4942  236 LKNEIASAEAAAAKAREAAAAAEAAAARARAAE 268
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
190-408 6.91e-03

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 39.65  E-value: 6.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 190 EGMEMKLQVTQRSLEESQGKIAQLEgKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEI 269
Cdd:COG1269   47 EKLKVAEVAQISLSSLLSEVLDYLR-SVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSEL 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802 270 LSLKQSLEENIVILSKqVEDLNVKCQLLEKEKEDHVNRNREHNENLNAemqnLKQKFILEQQEREKLQQKELQI-----D 344
Cdd:COG1269  126 DEELEDLEDLLEELEP-LAYLDFDLSLLRGLKFLLVRLGLVRREKLEA----LVGVIEDEVALYGENVEASVVIvvahgA 200
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 217272802 345 SLLQQEKELSSSL---HQKLCSFQE-------EMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVK-QLEEEAK 408
Cdd:COG1269  201 EDLDKVSKILNELgfeLYEVPEFDGgpselisELEEVIAEIQDELESLRSELEALAEKIAEELLAVReILEIEKA 275
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
209-677 7.42e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 7.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  209 KIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVE 288
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  289 DLNVKCQLLeKEKEDHVNRNREHNENLNAEMQNLKQKFILEQ--QEREKLQQKELQIDSLLQQEKELSSSLhQKLCSFQE 366
Cdd:TIGR04523 275 ELEQNNKKI-KELEKQLNQLKSEISDLNNQKEQDWNKELKSElkNQEKKLEEIQNQISQNNKIISQLNEQI-SQLKKELT 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  367 EMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKssaahtqatllLQEKY 446
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK-----------LQQEK 421
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  447 DSMVQSLEDVTAQFESYKaltaSEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETE 526
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNN----SEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802  527 IKEITvsflQKITDLQNQ---LKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINK--WRLLYEELYNKTKPFQLQLDAF 601
Cdd:TIGR04523 498 LKKLN----EEKKELEEKvkdLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEEL 573
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802  602 EVEKQALLNEHGAAQEQLNKIRDSYAKLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEEL 677
Cdd:TIGR04523 574 KQTQKSLKKKQEEKQELIDQKEKEKKDLI--KEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
45-587 9.05e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 39.57  E-value: 9.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802    45 KQQKESKQNLNVDKDTTLPASARKVKSSESKKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLETELEKMEARLNAAL 124
Cdd:pfam02463  495 LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   125 REKTSLSANN---ATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQR 201
Cdd:pfam02463  575 LGARKLRLLIpklKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   202 SLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIV 281
Cdd:pfam02463  655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   282 ILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKL 361
Cdd:pfam02463  735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   362 CSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLL 441
Cdd:pfam02463  815 ELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 217272802   442 LQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSA 521
Cdd:pfam02463  895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGK 974
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 217272802   522 LKETEIKEITVSFLQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEEL 587
Cdd:pfam02463  975 VNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYL 1040
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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