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Conserved domains on  [gi|221136766|ref|NP_001137535|]
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oxysterol-binding protein-related protein 5 isoform b [Homo sapiens]

Protein Classification

OSBP family protein( domain architecture ID 10352147)

OSBP (oxysterol-binding protein) family protein similar to Arabidopsis thaliana oxysterol-binding protein-related protein 1D that may be involved in the transport of sterols

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
306-649 6.27e-113

Oxysterol-binding protein;


:

Pssm-ID: 460126  Cd Length: 366  Bit Score: 347.99  E-value: 6.27e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  306 LLKQLR--PGMDLSRVVLPTFVLEPRSFLNKLSDYYYHADLLSRAAVEEDAYSRMKLVLRWYLSGFYKKPKGIKKPYNPI 383
Cdd:pfam01237   2 LWSILKknIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTRRRVKKPFNPL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  384 LGETFRCCWfhpqTDSRTFYIAEQVSHHPPVSAFHVSNRkdGFCISGSITAKSRFYGNSLSALLDGKATLTFLNRAEDYT 463
Cdd:pfam01237  82 LGETFELVR----PDKGFRFIAEQVSHHPPISAFHAESK--GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYT 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  464 LTMPYAHCKGILYGTMTLELGGKVTIECAKNNFQAQLEFKLKPFFGGSTSiNQISGKIT-SGEEVLASLSGHWDRDVFIK 542
Cdd:pfam01237 156 WTKPTTYVHNIIFGKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRS-NEVTGKVYdKNGKVLYTLSGKWNESLYIK 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  543 EEGSGSSALFWTPSgevrrqrlrqhtvplEEQTELESERLWQH--------------VT--------------------- 587
Cdd:pfam01237 235 DVSTGKKSSEDDSV---------------EEQPDGESRLLWKAgplpnayygftsfaVTlneltdelgklpptdsrlrpd 299
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221136766  588 -RAISKGDQHRATQEKFALEEAQRQRARERQESLMPWKPQLFH---LDPITQEWHYRYEdHSPWDP 649
Cdd:pfam01237 300 qRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRWFKkvkDDPVTGEEYWKYK-GGYWER 364
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
134-180 4.99e-24

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd13286:

Pssm-ID: 473070  Cd Length: 130  Bit Score: 98.20  E-value: 4.99e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 221136766 134 KGPKGESVGSITQPLPSSYLIFRAASESDGRCWLDALELALRCSSLL 180
Cdd:cd13286   83 RGPKGESVGAITQPLPSSHLIFRAPTESDGRCWMDALELSLKCSSLL 129
 
Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
306-649 6.27e-113

Oxysterol-binding protein;


Pssm-ID: 460126  Cd Length: 366  Bit Score: 347.99  E-value: 6.27e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  306 LLKQLR--PGMDLSRVVLPTFVLEPRSFLNKLSDYYYHADLLSRAAVEEDAYSRMKLVLRWYLSGFYKKPKGIKKPYNPI 383
Cdd:pfam01237   2 LWSILKknIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTRRRVKKPFNPL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  384 LGETFRCCWfhpqTDSRTFYIAEQVSHHPPVSAFHVSNRkdGFCISGSITAKSRFYGNSLSALLDGKATLTFLNRAEDYT 463
Cdd:pfam01237  82 LGETFELVR----PDKGFRFIAEQVSHHPPISAFHAESK--GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYT 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  464 LTMPYAHCKGILYGTMTLELGGKVTIECAKNNFQAQLEFKLKPFFGGSTSiNQISGKIT-SGEEVLASLSGHWDRDVFIK 542
Cdd:pfam01237 156 WTKPTTYVHNIIFGKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRS-NEVTGKVYdKNGKVLYTLSGKWNESLYIK 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  543 EEGSGSSALFWTPSgevrrqrlrqhtvplEEQTELESERLWQH--------------VT--------------------- 587
Cdd:pfam01237 235 DVSTGKKSSEDDSV---------------EEQPDGESRLLWKAgplpnayygftsfaVTlneltdelgklpptdsrlrpd 299
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221136766  588 -RAISKGDQHRATQEKFALEEAQRQRARERQESLMPWKPQLFH---LDPITQEWHYRYEdHSPWDP 649
Cdd:pfam01237 300 qRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRWFKkvkDDPVTGEEYWKYK-GGYWER 364
PH_OPR5_ORP8 cd13286
Human Oxysterol binding protein related proteins 5 and 8 Pleckstrin homology (PH) domain; ...
134-180 4.99e-24

Human Oxysterol binding protein related proteins 5 and 8 Pleckstrin homology (PH) domain; Human ORP5 is proposed to function in efficient nonvesicular transfer of low-density lipoproteins-derived cholesterol (LDL-C) from late endosomes/lysosomes to the endoplasmic reticulum (ER). Human ORP8 is proposed to modulate lipid homeostasis and sterol regulatory element binding proteins (SREBP) activity. Both ORP5 and ORP8 contain a N-terminal PH domain, a C-terminal OSBP-related domain, followed by a transmembrane domain that localizes ORP5 to the ER. Unlike all the other human OSBP/ORPs they lack a FFAT motif (two phenylalanines in an acidic tract). Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270103  Cd Length: 130  Bit Score: 98.20  E-value: 4.99e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 221136766 134 KGPKGESVGSITQPLPSSYLIFRAASESDGRCWLDALELALRCSSLL 180
Cdd:cd13286   83 RGPKGESVGAITQPLPSSHLIFRAPTESDGRCWMDALELSLKCSSLL 129
 
Name Accession Description Interval E-value
Oxysterol_BP pfam01237
Oxysterol-binding protein;
306-649 6.27e-113

Oxysterol-binding protein;


Pssm-ID: 460126  Cd Length: 366  Bit Score: 347.99  E-value: 6.27e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  306 LLKQLR--PGMDLSRVVLPTFVLEPRSFLNKLSDYYYHADLLSRAAVEEDAYSRMKLVLRWYLSGFYKKPKGIKKPYNPI 383
Cdd:pfam01237   2 LWSILKknIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVAAFAVSGYSSTRRRVKKPFNPL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  384 LGETFRCCWfhpqTDSRTFYIAEQVSHHPPVSAFHVSNRkdGFCISGSITAKSRFYGNSLSALLDGKATLTFLNRAEDYT 463
Cdd:pfam01237  82 LGETFELVR----PDKGFRFIAEQVSHHPPISAFHAESK--GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKKTGEHYT 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  464 LTMPYAHCKGILYGTMTLELGGKVTIECAKNNFQAQLEFKLKPFFGGSTSiNQISGKIT-SGEEVLASLSGHWDRDVFIK 542
Cdd:pfam01237 156 WTKPTTYVHNIIFGKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRS-NEVTGKVYdKNGKVLYTLSGKWNESLYIK 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221136766  543 EEGSGSSALFWTPSgevrrqrlrqhtvplEEQTELESERLWQH--------------VT--------------------- 587
Cdd:pfam01237 235 DVSTGKKSSEDDSV---------------EEQPDGESRLLWKAgplpnayygftsfaVTlneltdelgklpptdsrlrpd 299
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221136766  588 -RAISKGDQHRATQEKFALEEAQRQRARERQESLMPWKPQLFH---LDPITQEWHYRYEdHSPWDP 649
Cdd:pfam01237 300 qRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRWFKkvkDDPVTGEEYWKYK-GGYWER 364
PH_OPR5_ORP8 cd13286
Human Oxysterol binding protein related proteins 5 and 8 Pleckstrin homology (PH) domain; ...
134-180 4.99e-24

Human Oxysterol binding protein related proteins 5 and 8 Pleckstrin homology (PH) domain; Human ORP5 is proposed to function in efficient nonvesicular transfer of low-density lipoproteins-derived cholesterol (LDL-C) from late endosomes/lysosomes to the endoplasmic reticulum (ER). Human ORP8 is proposed to modulate lipid homeostasis and sterol regulatory element binding proteins (SREBP) activity. Both ORP5 and ORP8 contain a N-terminal PH domain, a C-terminal OSBP-related domain, followed by a transmembrane domain that localizes ORP5 to the ER. Unlike all the other human OSBP/ORPs they lack a FFAT motif (two phenylalanines in an acidic tract). Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270103  Cd Length: 130  Bit Score: 98.20  E-value: 4.99e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 221136766 134 KGPKGESVGSITQPLPSSYLIFRAASESDGRCWLDALELALRCSSLL 180
Cdd:cd13286   83 RGPKGESVGAITQPLPSSHLIFRAPTESDGRCWMDALELSLKCSSLL 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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