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Conserved domains on  [gi|224177528|ref|NP_001138904|]
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small integral membrane protein 20 isoform 1 [Homo sapiens]

Protein Classification

small integral membrane protein 20( domain architecture ID 10633373)

small integral membrane protein 20 (SMIM20) is a DUF4538 domain-containing protein, which is a component of the MITRAC (mitochondrial translation regulation assembly intermediate of cytochrome c oxidase complex) complex, that regulates cytochrome c oxidase assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4538 pfam15061
Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane ...
 2-57 8.04e-28

Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane helix. Its function remains unknown. This family of proteins is found in eukaryotes. Proteins in this family are typically between 58 and 87 amino acids in length.


:

Pssm-ID: 405708  Cd Length: 56  Bit Score: 94.30  E-value: 8.04e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 224177528   2 SRNLRTALIFGGFISLIGAAFYPIYFRPLMRLEEYKKEQAINRAGIVQEDVQPPGL 57
Cdd:pfam15061  1 LRGWRYALFVGGFVGLIGLALYPIIIYPMLHPEEYKKIQKINRAGIKQEEIQPGGM 56
 
Name Accession Description Interval E-value
DUF4538 pfam15061
Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane ...
 2-57 8.04e-28

Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane helix. Its function remains unknown. This family of proteins is found in eukaryotes. Proteins in this family are typically between 58 and 87 amino acids in length.


Pssm-ID: 405708  Cd Length: 56  Bit Score: 94.30  E-value: 8.04e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 224177528   2 SRNLRTALIFGGFISLIGAAFYPIYFRPLMRLEEYKKEQAINRAGIVQEDVQPPGL 57
Cdd:pfam15061  1 LRGWRYALFVGGFVGLIGLALYPIIIYPMLHPEEYKKIQKINRAGIKQEEIQPGGM 56
 
Name Accession Description Interval E-value
DUF4538 pfam15061
Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane ...
 2-57 8.04e-28

Domain of unknown function (DUF4538); This protein family is thought to be a transmembrane helix. Its function remains unknown. This family of proteins is found in eukaryotes. Proteins in this family are typically between 58 and 87 amino acids in length.


Pssm-ID: 405708  Cd Length: 56  Bit Score: 94.30  E-value: 8.04e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 224177528   2 SRNLRTALIFGGFISLIGAAFYPIYFRPLMRLEEYKKEQAINRAGIVQEDVQPPGL 57
Cdd:pfam15061  1 LRGWRYALFVGGFVGLIGLALYPIIIYPMLHPEEYKKIQKINRAGIKQEEIQPGGM 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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