|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
25-197 |
3.10e-27 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 110.65 E-value: 3.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 25 DKGLHSISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGLEALV 104
Cdd:cd21340 11 DKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 105 N------------------------------LTKLNLSYNHINDLSGLMPLHglkyKLRYIDLHSNYIDSIHHLLQCTVG 154
Cdd:cd21340 91 NleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSLEPLAPLR----NLEQLDASNNQISDLEELLDLLSS 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 254675308 155 LHFLTNLILEkdgeGNPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:cd21340 167 WPSLRELDLT----GNPVCKKPKYRDKIILASKSLEVLDGKEI 205
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
421-952 |
4.30e-13 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 73.64 E-value: 4.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 421 VEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLK-----DAIFKERHCKAQ-----LEIIVHRL 490
Cdd:COG0419 221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKireeeLRELERLLEELEekierLEELEREI 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 491 QNEVKKLtIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQ 570
Cdd:COG0419 301 EELEEEL-EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 571 LHELL-----ALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERkheqEVKEYQEKIDILNQQYLDLENEFRIALTVEA 645
Cdd:COG0419 380 ALERLkqleeAIQELKEELAELSAALEEIQEELEELEKELEELER----ELEELEEEIKKLEEQINQLESKELMIAELAG 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 646 RRFKDV---QDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILI 722
Cdd:COG0419 456 AGEKCPvcgQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 723 EDDKQKSIQIELLKHEKT--QLISELAAKESLIYGLRTERK-----VWGQELACQSSTLSQSRGKLEAQIESLCRENESL 795
Cdd:COG0419 536 EKLENLLEELEELKEKLQlqQLKEELRQLEDRLQELKELLEelrllRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 796 RKSHESDCDALRIKCKI---------IEDQNETIRKLKDSLQEKDGQIKLLQEQIALIE--KCSQEQLNEKSSQLDSIVE 864
Cdd:COG0419 616 LQSLELSEAENELEEAEeeleselekLNLQAELEELLQAALEELEEKVEELEAEIRRELqrIENEEQLEEKLEELEQLEE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 865 KLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEmQVKEVKEKFEDKERKLKAERDKSLELQKDAM 944
Cdd:COG0419 696 ELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE-LLEELREKLGKAGLRADILRNLLAQIEAEAN 774
|
....*...
gi 254675308 945 EKLQNMDD 952
Cdd:COG0419 775 EILSKLSL 782
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
418-1026 |
3.60e-12 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 70.90 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 418 RSLVEQLDQEREMRWKAEQTEKKLMDYIDELhKQADEKKDVHSQALITTDRLKDAIFKERhcKAQLEIIVHRLQNEVKKL 497
Cdd:COG1196 305 SLLRERLEELENELEELEERLEELKEKIEAL-KEELEERETLLEELEQLLAELEEAKEEL--EEKLSALLEELEELFEAL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 498 TIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQ---IRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHEL 574
Cdd:COG1196 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLedlKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 575 LALKEQEHRQeietrqfftdaefqdaltkrLCKEERKHEQEVKEYQEKIDILNQQyLDLENEFRIALTVEARRFKDVQDG 654
Cdd:COG1196 462 LKELERELAE--------------------LQEELQRLEKELSSLEARLDRLEAE-QRASQGVRAVLEALESGLPGVYGP 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 655 FED------------------------VATELAKSKHALIWAQRKENESSSLIKDLtcmVKEQKTKLSEVCKLKQEAAAN 710
Cdd:COG1196 521 VAElikvkekyetaleaalgnrlqavvVENEEVAKKAIEFLKENKAGRATFLPLDR---IKPLRSLKSDAAPGFLGLASD 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 711 L-------QNQINTL--EILIEDDKQKSIQIELLKHEKTQLIS----ELAAKESLIYGLRTERKVWGQELacQSSTLSQS 777
Cdd:COG1196 598 LidfdpkyEPAVRFVlgDTLVVDDLEQARRLARKLRIKYRIVTldgdLVEPSGSITGGSRNKRSSLAQKR--ELKELEEE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 778 RGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK----------C 847
Cdd:COG1196 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEeleeleeeleE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 848 SQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKER 927
Cdd:COG1196 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 928 KLKaerdkSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYidcanlkvQQVEDEMRGLLDETCKNKKM 1007
Cdd:COG1196 836 EIE-----ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL--------EEEKEELEEELRELESELAE 902
|
650
....*....|....*....
gi 254675308 1008 MEEKIKQLACAISEIQKEM 1026
Cdd:COG1196 903 LKEEIEKLRERLEELEAKL 921
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
638-1021 |
6.69e-11 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 66.66 E-value: 6.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 638 RIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTKLSEVCKLKQEAAANLQNQINT 717
Cdd:COG1196 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL----ERQLEELKRELAALEEELEQLQSRLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 718 LEILIEddkQKSIQIELLKHEKTQLISELAAKESLIYGLRTERkvwgQELACQSSTLSQSRGKLEAQIESLCRENESLRK 797
Cdd:COG1196 742 LEEELE---ELEEELEELQERLEELEEELESLEEALAKLKEEI----EELEEKRQALQEELEELEEELEEAERRLDALER 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 798 SHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIekcsQEQLNEKSSQLDSIVEKLERHNERKEKLK 877
Cdd:COG1196 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL----KEELEELEAEKEELEDELKELEEEKEELE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 878 QQLKAKELELEEIRKAYSTLNKKWHDkgellshLEMQVKEVKEKFEDKERKLKAERDKSLElqkdamEKLQNMDDAFRRQ 957
Cdd:COG1196 891 EELRELESELAELKEEIEKLRERLEE-------LEAKLERLEVELPELEEELEEEYEDTLE------TELEREIERLEEE 957
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675308 958 VDEIVEAHQAEIMQLANEKQKYiDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISE 1021
Cdd:COG1196 958 IEALGPVNLRAIEEYEEVEERY-EELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
613-964 |
5.53e-10 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 63.58 E-value: 5.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 613 EQEVKEYQEKIDILNQQYLDLENEFRIA------LTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDL 686
Cdd:COG1196 666 KRELKELEEELAELEAQLEKLEEELKSLknelrsLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 687 TCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:COG1196 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESdcdalrIKCKiIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK 846
Cdd:COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEE------LKEE-LEELEAEKEELEDELKELEEEKEELEEELRELES 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 847 csqeQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAysTLNKKWHDKgelLSHLEMQVKEVK------- 919
Cdd:COG1196 899 ----ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED--TLETELERE---IERLEEEIEALGpvnlrai 969
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 254675308 920 ---EKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEA 964
Cdd:COG1196 970 eeyEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
710-956 |
5.67e-10 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 63.58 E-value: 5.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 710 NLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIyglrteRKVWgQELACQSSTLSQSRGKLEAQIESLC 789
Cdd:COG1196 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL------REEL-EELQEELLELKEEIEELEGEISLLR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 790 RENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLL--------------------------QEQIAL 843
Cdd:COG1196 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELeeakeeleeklsalleeleelfealrEELAEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 844 IEKCS--QEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEK 921
Cdd:COG1196 389 EAELAeiRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
|
250 260 270
....*....|....*....|....*....|....*..
gi 254675308 922 FEDKERKLKAERD--KSLELQKDAMEKLQNMDDAFRR 956
Cdd:COG1196 469 LAELQEELQRLEKelSSLEARLDRLEAEQRASQGVRA 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
646-1026 |
6.23e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 6.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 646 RRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDD 725
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 726 KQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcRENESLRKSHESDCDA 805
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 806 LRikcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKEL 885
Cdd:TIGR02168 836 TE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 886 ELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKErklkaerdkSLELqkDAMEKLQNMDDAFRRQVDEIVEAH 965
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY---------SLTL--EEAEALENKIEDDEEEARRRLKRL 977
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308 966 QAEIMQLANekqkyidcANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKEM 1026
Cdd:TIGR02168 978 ENKIKELGP--------VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA 1030
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
656-1011 |
8.79e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 8.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 656 EDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELL 735
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 736 KHEKTQLISELAAKESLIyglrterkvwgqelacqsstlsqsrGKLEAQIESLCReneslRKSHESdcdaLRIKCKIIED 815
Cdd:TIGR02169 757 KSELKELEARIEELEEDL-------------------------HKLEEALNDLEA-----RLSHSR----IPEIQAELSK 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 816 QNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQE---QLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQElqeQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 893 AystlnkkwhdkgelLSHLEMQVKEVKEKF---EDKERKLKAERDKSLELQKDAMEKLQN-------MDDAFRRQVDE-- 960
Cdd:TIGR02169 883 R--------------LGDLKKERDELEAQLrelERKIEELEAQIEKKRKRLSELKAKLEAleeelseIEDPKGEDEEIpe 948
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 254675308 961 ---IVEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEK 1011
Cdd:TIGR02169 949 eelSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
423-1010 |
1.17e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 423 QLDQEREMRWKAEQTEkkLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIELM 502
Cdd:TIGR02168 333 DELAEELAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 503 KARDQQEDHIRHLRTLERALEKMEkqkaqqqaaqirlIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEH 582
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 583 RQeieTRQFFTDAEFQDALTKRLCKEERKHEQEVKEY---QEKIDILNQQYLDL---ENEFRIALTVEARRF------KD 650
Cdd:TIGR02168 478 DA---AERELAQLQARLDSLERLQENLEGFSEGVKALlknQSGLSGILGVLSELisvDEGYEAAIEAALGGRlqavvvEN 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 651 VQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSeVCKLKQEAAANLQNQINTL--EILIEDDKQK 728
Cdd:TIGR02168 555 LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG-VAKDLVKFDPKLRKALSYLlgGVLVVDDLDN 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 729 SIQIELLKHEKTQLIS---ELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDA 805
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 806 LRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQE----------QLNEKSSQLDSIVEKLERHNERKEK 875
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieeleeRLEEAEEELAEAEAEIEELEAQIEQ 793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 876 LKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKdAMEKLQNMDDAFR 955
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA-EIEELEELIEELE 872
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 254675308 956 RQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGLLDETCKNKKMMEE 1010
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRRELEELREKLAQ 926
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
439-1016 |
2.50e-09 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 61.31 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 439 KKLMDYIDELHKQADEKKDVHSQALITTDRlkdaiFKERHCKAQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTL 518
Cdd:COG0419 170 EKLSELLKEVIKEAKAKIEELEGQLSELLE-----DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 519 ERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQ 598
Cdd:COG0419 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 599 DALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRI------ALTVEARRFKDVQDGFEDVATELAKSKHALIWA 672
Cdd:COG0419 325 KSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKEleerleELEKELEKALERLKQLEEAIQELKEELAELSAA 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 673 QRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELaaKESL 752
Cdd:COG0419 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLEL--YELE 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 753 IYGLRTERKvwgqeLACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDG 832
Cdd:COG0419 483 LEELEEELS-----REKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQL 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 833 QIKLLQEQIALIE-KCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQqLKAKELELEEIRKAYSTLNKKW--HDKGELLS 909
Cdd:COG0419 558 KEELRQLEDRLQElKELLEELRLLRTRKEELEELRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENelEEAEEELE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 910 HLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQnmDDAFRRQVDEIVEAHQAEIMQLANEKQKYIdcanlKVQQ 989
Cdd:COG0419 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ--RIENEEQLEEKLEELEQLEEELEQLREELE-----ELLK 709
|
570 580
....*....|....*....|....*..
gi 254675308 990 VEDEMRGLLDETCKNKKMMEEKIKQLA 1016
Cdd:COG0419 710 KLGEIEQLIEELESRKAELEELKKELE 736
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
65-197 |
1.29e-08 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 55.54 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 65 LDLSSNQISQIEGLNTLTKLCTLNLSCNLITRV-EGL-EALVNLTKLNLSYNHINDLSGLMPLHGLKyKLRYIDLHSNyi 142
Cdd:pfam14580 47 IDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLK-KLTFLSLLRN-- 123
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 254675308 143 dsihhllqctvglhfltnlilekdgegnPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:pfam14580 124 ----------------------------PVTNKPHYRLYVIYKVPQLRLLDFRKV 150
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
544-840 |
2.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 544 ELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRqEIETRQFFTDAEFQdalTKRLCKEERkhEQEVKEYQEKI 623
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELE-ELTAELQELEEKLE---ELRLEVSEL--EEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 624 DILNQQYLDLENEFRIAltveARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKL 703
Cdd:TIGR02168 291 YALANEISRLEQQKQIL----RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 704 KQEaaanLQNQINTLEILIEDDKQKSIQielLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGK-LE 782
Cdd:TIGR02168 367 LEE----LESRLEELEEQLETLRSKVAQ---LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQ 439
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308 783 AQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQ 840
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
417-1026 |
2.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 417 YRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKD----VHSQALITTDRLKDAIFKERHCKAQLEIIV---HR 489
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseLEEEIEELQKELYALANEISRLEQQKQILRerlAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 490 LQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL---IQEVELKASAADREINLLRTSLHQEKQ 566
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 567 QVQQLhellalkeQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRialtvear 646
Cdd:TIGR02168 394 QIASL--------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE-------- 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 647 rfkDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAAnLQNQINTLEILIEDDK 726
Cdd:TIGR02168 458 ---RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG-LSGILGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 727 QKSIQIELLKHEKTQ--LISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcRENESLRKSHESDCD 804
Cdd:TIGR02168 534 GYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI-EGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 805 ALRI-------KCKIIEDQNETIRKLKDSLQE-----KDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNER 872
Cdd:TIGR02168 613 KLRKalsyllgGVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 873 KEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEK-----------------FEDKERKLKAERDK 935
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqleeriaqlskelteLEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 936 SLELQKDAMEKLQNMD---DAFRRQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGL---LDETCKNKKMME 1009
Cdd:TIGR02168 773 AEEELAEAEAEIEELEaqiEQLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATerrLEDLEEQIEELS 851
|
650
....*....|....*..
gi 254675308 1010 EKIKQLACAISEIQKEM 1026
Cdd:TIGR02168 852 EDIESLAAEIEELEELI 868
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-1025 |
3.41e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 435 EQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEiivhRLQNEVKKLTIELMKARDQQEDHIRH 514
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKIN----KLNSDLSKINSEIKNDKEQKNKLEVE 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 515 LRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTD 594
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 595 AEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFrialtvearrfKDVQDGFEDVATELAKSKHALIWAQR 674
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI-----------SNTQTQLNQLKDEQNKIKKQLSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 675 KENESSSLIKDLTCMVKEQKTKLSEVCKLKQeaaanlQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELaakESLIY 754
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQL---NEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 755 GLRTERKvwgqELACQSSTLSQSRGKLEAQIESLCRENESLR---KSHESDCDALRIKCKIIEDQN----ETIRKLKDSL 827
Cdd:TIGR04523 346 QLKKELT----NSESENSEKQRELEEKQNEIEKLKKENQSYKqeiKNLESQINDLESKIQNQEKLNqqkdEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 828 QEKDGQIKLLQEQIALiEKCSQEQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGEL 907
Cdd:TIGR04523 422 ELLEKEIERLKETIIK-NNSEIKDLTNQDSVKELIIKNLDN---TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 908 LSHLEMQVKEVKEKFED----------KERKLKAERDKSLELQKDAMEKLQNMDDAFRR-QVDEIVEAHQAEIMQLANEk 976
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDltkkisslkeKIEKLESEKKEKESKISDLEDELNKDDFELKKeNLEKEIDEKNKEIEELKQT- 576
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 254675308 977 QKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
607-897 |
1.52e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 55.49 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 607 KEERKHEQEVKEYQEKIDILNQQYldleNEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDL 686
Cdd:COG1196 218 LKAELRELELALLLAKLKELRKEL----EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 687 TCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:COG1196 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIaliek 846
Cdd:COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL----- 448
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 254675308 847 csqEQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKAYSTL 897
Cdd:COG1196 449 ---EELEEQLEELRDRLKELER---ELAELQEELQRLEKELSSLEARLDRL 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
467-1025 |
1.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 467 DRLKDAifKERHCKAQLEIivHRLQNEVKKLTIEL---MKARDQQEDHIRHLRTLERALE-KMEKQKAQQQAAQIRLIQE 542
Cdd:TIGR02169 315 RELEDA--EERLAKLEAEI--DKLLAEIEELEREIeeeRKRRDKLTEEYAELKEELEDLRaELEEVDKEFAETRDELKDY 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 543 VElKASAADREINLLRTSLHQEKQQVQQLHELLAlkeqEHRQEIEtRQFFTDAEFQDALtKRLCKEERKHEQEVKEYQEK 622
Cdd:TIGR02169 391 RE-KLEKLKREINELKRELDRLQEELQRLSEELA----DLNAAIA-GIEAKINELEEEK-EDKALEIKKQEWKLEQLAAD 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 623 IDILNQQYLDLENEFRialtvearrfkDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCK 702
Cdd:TIGR02169 464 LSKYEQELYDLKEEYD-----------RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 703 LKQEAAANLQ----NQINTleILIEDDKQKSIQIELLKHEK--------------------------------------- 739
Cdd:TIGR02169 533 VGERYATAIEvaagNRLNN--VVVEDDAVAKEAIELLKRRKagratflplnkmrderrdlsilsedgvigfavdlvefdp 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 740 ------------TQLISELAAKESLIYGLR---------------TERKVWGQELACQSSTLSQSRGKLEAQIESLCREN 792
Cdd:TIGR02169 611 kyepafkyvfgdTLVVEDIEAARRLMGKYRmvtlegelfeksgamTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 793 ESLRK---SHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAL-IEKCSQEQLNEKSSqLDSIVEKLER 868
Cdd:TIGR02169 691 SSLQSelrRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQEIENVKSE-LKELEARIEE 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 869 HNERKEKLKQQLKAKELEL-----EEIRKAYSTLNKKWHDKGELLSHLE--MQVKEVKEKFEDKERKLKAERDKSLELQK 941
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEqkLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 942 DAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEK---QKYIDCANLKVQQVEDEMRGL---LDETCKNKKMMEEKIKQL 1015
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlKKERDELEAQLRELERKIEELeaqIEKKRKRLSELKAKLEAL 929
|
650
....*....|
gi 254675308 1016 ACAISEIQKE 1025
Cdd:TIGR02169 930 EEELSEIEDP 939
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
372-984 |
2.07e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 372 RKMRQPYLRDLYVRSSLVNCNNLRDLDEQKTGVIKVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDY---IDEL 448
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAkkkADAA 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 449 HKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQ---NEVKKLTIELMKA----RDQQEDHIRHLRTLERA 521
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKkkaDAAKKKAEEKKKAdeakKKAEEDKKKADELKKAA 1414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 522 LEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSlhQEKQQVQQLHEllalKEQEHRQEIETRQFFTDAEFQDAL 601
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA--EEAKKAEEAKK----KAEEAKKADEAKKKAEEAKKADEA 1488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 602 TKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIALTVEARRFKDVQDGFEDV--ATELAKSKHALIWAQRKENES 679
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKAEELKKAEEKKKAEE 1568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 680 SSLIKDLtcmvKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTE 759
Cdd:PTZ00121 1569 AKKAEED----KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 760 RKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQN--ETIRKLKDSLQEKDGQIKLL 837
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkaEELKKKEAEEKKKAEELKKA 1724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 838 QEqialIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMqvke 917
Cdd:PTZ00121 1725 EE----ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV---- 1796
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 918 vkekfedkERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQL--ANEKQKYIDCAN 984
Cdd:PTZ00121 1797 --------DKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLeeADAFEKHKFNKN 1857
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
690-942 |
2.94e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.25 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 690 VKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQLISELAAKESLIYGLRTERkvwgqelac 769
Cdd:PHA02562 197 IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKA---EIEELTDELLNLVMDIEDPSAALNKLNTAA--------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 770 qsstlsqsrGKLEAQIESLCRENESLRKSHEsdCDAlrikCK-IIEDQNETIRKLKDSLQEKDGQIKLLQEQIaliekcs 848
Cdd:PHA02562 265 ---------AKIKSKIEQFQKVIKMYEKGGV--CPT----CTqQISEGPDRITKIKDKLKELQHSLEKLDTAI------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 849 qEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERK 928
Cdd:PHA02562 323 -DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
250
....*....|....
gi 254675308 929 lKAERDKSLELQKD 942
Cdd:PHA02562 402 -KYHRGIVTDLLKD 414
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
28-230 |
3.51e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 227223 [Multi-domain] Cd Length: 394 Bit Score: 53.82 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 28 LHSISELSLDSSIHAINLHCNNISK-ISSIDHIWNLRHLDLSSNQISQIEGLNTLTK--LCTLNLSCNLITRV-EGLEAL 103
Cdd:COG4886 83 LDGSENLLNLLPLPSLDLNLNRLRSnISELLELTNLTSLDLDNNNITDIPPLIGLLKsnLKELDLSDNKIESLpSPLRNL 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 104 VNLTKLNLSYNHINDLSglmPLHGLKYKLRYIDLHSNYIDSIHhllqctvGLHFLTNLILEKDGEGNPICLIPGyraiIL 183
Cdd:COG4886 163 PNLKNLDLSFNDLSDLP---KLLSNLSNLNNLDLSGNKISDLP-------PEIELLSALEELDLSNNSIIELLS----SL 228
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 254675308 184 QTLPQLRILDCKNIFGEPVSLEEINSSHLQCLEgLLDNLVSSDSPLN 230
Cdd:COG4886 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLD-LSNNQISSISSLG 274
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
481-1026 |
5.70e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 53.95 E-value: 5.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 481 AQLEIIVHRLQNEVKKLTIELMKARDQQE--------------DHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELK 546
Cdd:COG1196 189 ERLEDLLEELEKQLEKLERQAEKAERYQElkaelrelelalllAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 547 ASAADREINLLRTSLHQEKQQVQQLHELLA--------LKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKE 618
Cdd:COG1196 269 IEELKSELEELREELEELQEELLELKEEIEelegeislLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 619 YQEKIDILNQQYLDLENEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLS 698
Cdd:COG1196 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 699 EV---CKLKQEAAANLQNQINTLEILIEDDKQKSIQIE----LLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQS 771
Cdd:COG1196 429 ELeaeLEELQTELEELNEELEELEEQLEELRDRLKELErelaELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 772 STLSQSRG-------------KLEAQIESLC--------------------------------------RENESLRKSHE 800
Cdd:COG1196 509 ALESGLPGvygpvaelikvkeKYETALEAALgnrlqavvveneevakkaieflkenkagratflpldriKPLRSLKSDAA 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 801 SDCDALRIK---------------------CKIIEDQNETIRKLKDS---------LQEKDG-----------------Q 833
Cdd:COG1196 589 PGFLGLASDlidfdpkyepavrfvlgdtlvVDDLEQARRLARKLRIKyrivtldgdLVEPSGsitggsrnkrsslaqkrE 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 834 IKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEM 913
Cdd:COG1196 669 LKELEEELAELE----AQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 914 QVKEVKEKFED-KERKLKAERD-KSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEK----------QKYID 981
Cdd:COG1196 745 ELEELEEELEElQERLEELEEElESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLdalereleslEQRRE 824
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 254675308 982 CANLKVQQVEDEMRGL---LDETCKNKKMMEEKIKQLACAISEIQKEM 1026
Cdd:COG1196 825 RLEQEIEELEEEIEELeekLDELEEELEELEKELEELKEELEELEAEK 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
480-788 |
8.93e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 53.18 E-value: 8.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 480 KAQLEIIVHRLQNEVKKLTIELMKARDQQEDH---IRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINL 556
Cdd:COG1196 683 LEKLEEELKSLKNELRSLEDLLEELRRQLEELerqLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 557 LRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERK--------HEQEVKEYQEKIDILNQ 628
Cdd:COG1196 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELEsleqrrerLEQEIEELEEEIEELEE 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 629 QYLDLE---NEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQ 705
Cdd:COG1196 843 KLDELEeelEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 706 EAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTqlISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQI 785
Cdd:COG1196 923 RLEVELPELEEELEEEYEDTLETELEREIERLEEE--IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000
|
...
gi 254675308 786 ESL 788
Cdd:COG1196 1001 EEL 1003
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
507-892 |
1.23e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 429718 [Multi-domain] Cd Length: 488 Bit Score: 52.20 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 507 QQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLhellalkEQEHRQEI 586
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEEL-------EEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 587 ETRQFFTdAEFqdaltKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEF-RIALTVE--ARRFKDVQDGFEDVATELa 663
Cdd:pfam07888 108 RSGEELA-EEK-----DALLAQRAESEARIRELEEDIKTLTQRVLERETELeRMKERVKkaGAQRKEEEAERKQLQAKL- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 664 kskhaliwaQRKENESSSLIKDLtcmvKEQKTKLSEvcklKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLI 743
Cdd:pfam07888 181 ---------QQTEEELRSLSKEF----QELRNSLAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 744 SELAAKESLIYGLRTERKVWGQ--------------ELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDAlrik 809
Cdd:pfam07888 244 ERLNASERKVEGLGEELSSMAAqrdrtqaelhqarlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDR---- 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 810 ckiIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERhnERKEKLKQQLKAKELeLEE 889
Cdd:pfam07888 320 ---IEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRV--AQKEKEQLQAEKQEL-LEY 393
|
...
gi 254675308 890 IRK 892
Cdd:pfam07888 394 IRQ 396
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
480-1025 |
1.25e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 52.80 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 480 KAQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRT----LERALEKMEKQKAQQQAAQIRLIQEVELKASAADREIN 555
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 556 LLRTS-------LHQEKQQVQQLHELLaLKEQEHRQEIetRQFFTDaeFQDALTKRLCKEERKHEQEVKEYQEKIDILNQ 628
Cdd:pfam15921 153 ELEAAkclkedmLNDSNTQIEQLRKMM-LSHEGVLQEI--RSILVD--FEEASGKKIYEHDSMSTIHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 629 QyLDLENEFrialtVEARRFKdVQDGFEDVATElAKSKHALIWAQRKENessslIKDLTCMVKEQKTKLSEVCKLKQEAA 708
Cdd:pfam15921 228 E-LDTEISY-----LKGRIFP-VEDQLEALKSE-SQNKIELLLQQHQDR-----IEQLISEHEVEITGLTEKASSARSQA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 709 ANLQNQintLEILIEDDKQKSI----QIELLKHEKTQLISELAAKE------------------SLIYGLRTERKVWGQE 766
Cdd:pfam15921 295 NSIQSQ---LEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKrmyedkieelekqlvlanSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDC------DALRikcKIIEDQNETIRKLKDSLQ----EKDGQikl 836
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsitiDHLR---RELDDRNMEVQRLEALLKamksECQGQ--- 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 837 LQEQIALIEKcsqeqLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVK 916
Cdd:pfam15921 446 MERQMAAIQG-----KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEIT 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 917 EVKEKFEdkerkLKAERDKSLELQKDAMEKLQNMDDAFRRQV---DEIVEAHQAEI---MQLANEKQKYIDCANLKVQQV 990
Cdd:pfam15921 521 KLRSRVD-----LKLQELQHLKNEGDHLRNVQTECEALKLQMaekDKVIEILRQQIenmTQLVGQHGRTAGAMQVEKAQL 595
|
570 580 590
....*....|....*....|....*....|....*...
gi 254675308 991 EDEM---RGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam15921 596 EKEIndrRLELQEFKILKDKKDAKIRELEARVSDLELE 633
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
813-1025 |
1.47e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 813 IEDQNETIRKLKDSLQEKDGQIKLLQEQ----IALIEKCSQE----------QLNEKSSQLDSIVEKLERHNERKEKLKQ 878
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQaekaERYKELKAELrelelallvlRLEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 879 QLKAKELELEEIRKAYSTLNKK-------WHDKGELLSHLEMQVKEVKEKFEDKERKLK------AERDKSLELQKDAME 945
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEieelqkeLYALANEISRLEQQKQILRERLANLERQLEeleaqlEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 946 KLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDCanlkvQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEEL-----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
82-142 |
2.60e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.59 E-value: 2.60e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308 82 TKLCTLNLSCNLITRVEG--LEALVNLTKLNLSYNHINDLSGLMpLHGLKyKLRYIDLHSNYI 142
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPGA-FSGLP-SLRYLDLSGNRL 61
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
420-979 |
2.81e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 420 LVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQ--NEVKKL 497
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQklQSLCKE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 498 TIELMKARDQQEDHIRHLRTLER---ALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQ---VQQL 571
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGqlaHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQlqtKEQI 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 572 HELLALKEQEH---------------RQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKE----YQEKIDILNQQYLD 632
Cdd:TIGR00618 482 HLQETRKKAVVlarllelqeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSeedvYHQLTSERKQRASL 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 633 LENEFRIaltvearrfkdvQDGFEDVATELAKSKHALIWAQRKENEssslIKDLTCMVKEQKTKLSEvckLKQEAAANLQ 712
Cdd:TIGR00618 562 KEQMQEI------------QQSFSILTQCDNRSKEDIPNLQNITVR----LQDLTEKLSEAEDMLAC---EQHALLRKLQ 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 713 NQINTLEILIEdDKQKSIQIELLKHEKTQLISELAAKESLIYGLRT---ERKVWGQ---ELACQSSTLSQSRGKLE--AQ 784
Cdd:TIGR00618 623 PEQDLQDVRLH-LQQCSQELALKLTALHALQLTLTQERVREHALSIrvlPKELLASrqlALQKMQSEKEQLTYWKEmlAQ 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 785 IESLCRENES----LRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKdgQIKLLQEQIALIEKCSQEQLNE--KSSQ 858
Cdd:TIGR00618 702 CQTLLRELEThieeYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ--ARTVLKARTEAHFNNNEEVTAAlqTGAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 859 LDSIVEKLERHNERKEKLKQQLKAKELELEEIRKaystlnkkwHDKGELLSHLEMQVKE---VKEKFEDKERKLKAERDK 935
Cdd:TIGR00618 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP---------SDEDILNLQCETLVQEeeqFLSRLEEKSATLGEITHQ 850
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 254675308 936 SLELQKDAMEKLQNMDDAFR--RQVDEIVEAHQAEIMQLANEKQKY 979
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQAKiiQLSDKLNGINQIKIQFDGDALIKF 896
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
663-941 |
3.84e-06 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 50.79 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 663 AKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQL 742
Cdd:COG4372 56 AATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 743 ISELAAKESLIYGLRTERKvwgqelacqssTLSQSRGKLEAQIESLCRENESLRKSHE---SDCDALRIKCKIIEDQNET 819
Cdd:COG4372 136 QQELARLTKQAQDLQTRLK-----------TLAEQRRQLEAQAQSLQASQKQLQASATqlkSQVLDLKLRSAQIEQEAQN 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 820 IRKLKDSLQEKDGQIKLLQEQI-ALIEKCSQ-----EQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKA 893
Cdd:COG4372 205 LATRANAAQARTEELARRAAAAqQTAQAIQQrdaqiSQKAQQIAARAEQIRERER---QLQRLETAQARLEQEVAQLEAY 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 254675308 894 YST-----LNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLK-AERDKSLELQK 941
Cdd:COG4372 282 YQAyvrlrQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSsANRPAALRLRR 335
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
804-1025 |
9.40e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 804 DALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEqIALIEKCSQEQLNEKS-SQLDSIVEKLERHnerKEKLKQQLKA 882
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE-YEGYELLKEKEALERQkEAIERQLASLEEE---LEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 883 KELELEEIRKAYSTLNKKWHDKGELLShleMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEI- 961
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQ---LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIe 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 962 -----VEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGlLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR02169 340 elereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE-FAETRDELKDYREKLEKLKREINELKRE 407
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
386-940 |
1.83e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 48.94 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 386 SSLVNCNNLRDLDEQKTGVIkvdknfsDNSTYRSLVEQLDQEREMRWKAEQTeKKLMD-------YIDELHKQADEKKdv 458
Cdd:pfam15921 356 SELTEARTERDQFSQESGNL-------DDQLQKLLADLHKREKELSLEKEQN-KRLWDrdtgnsiTIDHLRRELDDRN-- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 459 hsqalITTDRLkDAIFK--ERHCKAQLEIIVHRLQ------NEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKA 530
Cdd:pfam15921 426 -----MEVQRL-EALLKamKSECQGQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 531 QQQAAqirlIQEVELKASAADREINLLRTSLHQEKQQVQQLHellalKEQEHRQEIETRQfftdaefqDALTKRLCKEER 610
Cdd:pfam15921 500 DLTAS----LQEKERAIEATNAEITKLRSRVDLKLQELQHLK-----NEGDHLRNVQTEC--------EALKLQMAEKDK 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 611 KheqevkeyqekIDILNQQyldLENEFRIAltvearrfkdVQDGFEDVATELAKSKhaliwAQRKENESSSLIKDLTCMV 690
Cdd:pfam15921 563 V-----------IEILRQQ---IENMTQLV----------GQHGRTAGAMQVEKAQ-----LEKEINDRRLELQEFKILK 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 691 KEQKTKLSEvcklkqeaaanLQNQINTLEI----LIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:pfam15921 614 DKKDAKIRE-----------LEARVSDLELekvkLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 767 LACQSSTLSQSRGKLEAQIESLCRENESLR---KSHE-SDCDALRIKCkiiedqnetirKLKDSLQEKDGQIKLLQEQIA 842
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRntlKSMEgSDGHAMKVAM-----------GMQKQITAKRGQIDALQSKIQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 843 LIEKCSQEQLNEKSSQldsiveklerhNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKF 922
Cdd:pfam15921 752 FLEEAMTNANKEKHFL-----------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQF 820
|
570
....*....|....*...
gi 254675308 923 EDKERKLKAERDKSLELQ 940
Cdd:pfam15921 821 AECQDIIQRQEQESVRLK 838
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
710-938 |
1.86e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227278 [Multi-domain] Cd Length: 420 Bit Score: 48.18 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 710 NLQNQINTLEILIEDDKQK--SIQIELLKHEKT--QLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQI 785
Cdd:COG4942 42 QIQKEIAALEKKIREQQDQraKLEKQLKSLETEiaSLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 786 ESLCR--ENES--LRKSHESDCDALRIKcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAliekCSQEQLNEKSSQLDS 861
Cdd:COG4942 122 AALQRsgRNPPpaLLVSPEDAQRSVRLA-IYYGALNPARAERIDALKATLKQLAAVRAEIA----AEQAELTTLLSEQRA 196
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675308 862 IVEKLERHNERKEKLKQQLkAKELELEEIRKAysTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERklKAERDKSLE 938
Cdd:COG4942 197 QQAKLAQLLEERKKTLAQL-NSELSADQKKLE--ELRANESRLKNEIASAEAAAAKAREAAAAAEA--AAARARAAE 268
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
417-981 |
2.60e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 417 YRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQ-----------------ADEKKDVHSQALITTDRLKDAI------ 473
Cdd:PRK04863 416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKeqeateellsleqklsvAQAAHSQFEQAYQLVRKIAGEVsrseaw 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 474 --FKE--------RHCKAQLEIIVHRLQnevkkltiELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEV 543
Cdd:PRK04863 496 dvAREllrrlreqRHLAEQLQQLRMRLS--------ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARL 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 544 ElKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHR--QEIETR---QF---FTDAEFQDALTKRLCKEERKHEQE 615
Cdd:PRK04863 568 E-SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLaaQDALARlreQSgeeFEDSQDVTEYMQQLLERERELTVE 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 616 VKEYQEKIDILNQQYLDL---ENEFRIALTVEARRFKDV--QDGFEDVATE--------LAKSKHALiwaqrkenesssL 682
Cdd:PRK04863 647 RDELAARKQALDEEIERLsqpGGSEDPRLNALAERFGGVllSEIYDDVSLEdapyfsalYGPARHAI------------V 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 683 IKDLtCMVKEQktklsevcklkqeaaanLQNQINTLE--ILIEDDKQK----SIQIELLKHEKTQLISEL---------- 746
Cdd:PRK04863 715 VPDL-SDAAEQ-----------------LAGLEDCPEdlYLIEGDPDSfddsVFSVEELEKAVVVKIADRqwrysrfpev 776
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 747 -----AAKESLIYGLRTERkvwgQELACQSSTLSQSRGKLEAQIESLCRE-NESLRKSHESDCDALrikckiIEDQNETI 820
Cdd:PRK04863 777 plfgrAAREKRIEQLRAER----EELAERYATLSFDVQKLQRLHQAFSRFiGSHLAVAFEADPEAE------LRQLNRRR 846
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 821 RKLKDSLQEKDG-------QIKLLQEQIALIEKCS-----------QEQLNEKSSQLDSIVEK---LERHNERKEKLKQQ 879
Cdd:PRK04863 847 VELERALADHESqeqqqrsQLEQAKEGLSALNRLLprlnlladetlADRVEEIREQLDEAEEAkrfVQQHGNALAQLEPI 926
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 880 ---LKAKELELEEIRKAYSTLNKKWHDkgellshLEMQVKEVKE--------KFEDKERKLKAERDKSLELQKDaMEKLQ 948
Cdd:PRK04863 927 vsvLQSDPEQFEQLKQDYQQAQQTQRD-------AKQQAFALTEvvqrrahfSYEDAAEMLAKNSDLNEKLRQR-LEQAE 998
|
650 660 670
....*....|....*....|....*....|...
gi 254675308 949 NMddafRRQVDEIVEAHQAeimQLANEKQKYID 981
Cdd:PRK04863 999 QE----RTRAREQLRQAQA---QLAQYNQVLAS 1024
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
809-1015 |
2.70e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 809 KCKIIEDQNETIRKLKDSLQEkdgQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELE 888
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQQ---QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 889 EIRKAYSTLNK----------------KWHDKGELLSHLEMQVKEVKEKFEDKERKLKaERDKSLELQKDAMEKLQNMDD 952
Cdd:PHA02562 252 DPSAALNKLNTaaakikskieqfqkviKMYEKGGVCPTCTQQISEGPDRITKIKDKLK-ELQHSLEKLDTAIDELEEIMD 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308 953 AFRRQVDEIVEAHQaeimQLANEKQKYIDCANlKVQQVEDEMRGLLDETCKNKKMMEEKIKQL 1015
Cdd:PHA02562 331 EFNEQSKKLLELKN----KISTNKQSLITLVD-KAKKVKAAIEELQAEFVDNAEELAKLQDEL 388
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
542-1025 |
3.37e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 542 EVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEqEHRQEIETrqffTDAEFQDaLTKRLCKEERKHEqevkEYQE 621
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHE-ERREELET----LEAEIED-LRETIAETERERE----ELAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 622 KIDILNQQYLDLENEFRIAL-----------TVEARRfKDVQDGFEDVATELAKSKHAliwAQRKENESSSLikdltcmv 690
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLaeaglddadaeAVEARR-EELEDRDEELRDRLEECRVA---AQAHNEEAESL-------- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 691 KEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQLISELAAKESLIYGLRTERkvwgQELACQ 770
Cdd:PRK02224 348 REDADDLEERAEELREEAAELESELEEAREAVEDRRE---EIEELEEEIEELRERFGDAPVDLGNAEDFL----EELREE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 771 SSTLSQSRGKLEAQIESL---CRENESLRKshESDC--------DALRIKckIIEDQNETIRKLKDSLQEKDGQIKLLQE 839
Cdd:PRK02224 421 RDELREREAELEATLRTArerVEEAEALLE--AGKCpecgqpveGSPHVE--TIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 840 QIAliekcSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVK 919
Cdd:PRK02224 497 RLE-----RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 920 EKFEDKERKLkAERDKSLELQKDAMEKLQNMDDAfRRQVDEIVEaHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLD 999
Cdd:PRK02224 572 EEVAELNSKL-AELKERIESLERIRTLLAAIADA-EDEIERLRE-KREALAELNDERRERLAEKRERKRELEAEFDEARI 648
|
490 500 510
....*....|....*....|....*....|....
gi 254675308 1000 ETCKNKKM--------MEEKIKQLACAISEIQKE 1025
Cdd:PRK02224 649 EEAREDKEraeeyleqVEEKLDELREERDDLQAE 682
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
467-766 |
3.55e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 467 DRLKdaifKERHCKAQLEIIVHRLQN-EVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQA---AQIRLIQE 542
Cdd:TIGR02169 201 ERLR----REREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKrleEIEQLLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 543 VELKASA-ADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQfFTDAEFQ------DALTKRLCKEERKHEQ- 614
Cdd:TIGR02169 277 LNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEIDkllaeiEELEREIEEERKRRDKl 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 615 --EVKEYQEKIDILNQQYLDLENEFRIALtveaRRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKE 692
Cdd:TIGR02169 356 teEYAELKEELEDLRAELEEVDKEFAETR----DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675308 693 QKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
61-101 |
4.20e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 432794 [Multi-domain] Cd Length: 44 Bit Score: 41.46 E-value: 4.20e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 254675308 61 NLRHLDLSSNQISQIEGLNTLTKLCTLNLS-CNLITRVEGLE 101
Cdd:pfam12799 2 NLEVLDLSNNQITDLPPLAKLPNLETLDLSgNNKITDLSDLA 43
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
507-930 |
4.74e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 507 QQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLR---TSLHQEKQQVQQLHELLALKEQEHR 583
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeiEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 584 QEIETRqfftdaefqdaltkrlcKEERKH-EQEVKEYQEKIDILNQQYLDLENEFRialtveARRFKDVQDGFEDVATEL 662
Cdd:TIGR02169 751 QEIENV-----------------KSELKElEARIEELEEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 663 AKSKHALIWAQRKENESSSLIKDLtcmvkeqktklsevcklkQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQL 742
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYL------------------EKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEEL 866
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 743 ISELAAKESLIYGLRTERKvwgqelacqssTLSQSRGKLEAQIESLCREneslrkshesdcdalrikckiIEDQNETIRK 822
Cdd:TIGR02169 867 EEELEELEAALRDLESRLG-----------DLKKERDELEAQLRELERK---------------------IEELEAQIEK 914
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 823 LKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLD--SIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKK 900
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
410 420 430
....*....|....*....|....*....|
gi 254675308 901 whdkgelLSHLEMQVKEVKEKFEDKERKLK 930
Cdd:TIGR02169 995 -------RAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
728-1011 |
4.87e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 728 KSIQIELLKHEKTQLISELAAKESLIYGLRTERKvwgqelacqsstlsqsrgKLEAQIESLCRENESLRKSHESDCDALR 807
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEAEEELE------------------ELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 808 IKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELEL 887
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFED--------KERK--LKAERDKSLELQKDAMEKLQNMD-DAFRR 956
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneierlEARLerLEDRRERLQQEIEELLKKLEEAElKELQA 440
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308 957 QVDEI------VEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEK 1011
Cdd:TIGR02168 441 ELEELeeeleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
445-891 |
5.96e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 445 IDELHKQADEKKDVHSQALITTDRLKDAIfkERHCKAQLEIivHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEK 524
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVL--EEHEERREEL--ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 525 MEKQKAQqqaaqirLIQEVELKaSAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIET-RQFFTDAEfQDALTK 603
Cdd:PRK02224 291 LEEERDD-------LLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESlREDADDLE-ERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 604 R-----LCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIALTvearRFKDVQDGFEDVATELAK-------------- 664
Cdd:PRK02224 362 ReeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV----DLGNAEDFLEELREERDElrereaeleatlrt 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 665 --------------------------SKHALIWAQRKEN--ESSSLIKDLTCMVKEQKTKLSEVCKLKQEAA--ANLQNQ 714
Cdd:PRK02224 438 arerveeaealleagkcpecgqpvegSPHVETIEEDRERveELEAELEDLEEEVEEVEERLERAEDLVEAEDriERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 715 INTLEILIEDDK----QKSIQIELLKHEKTQLISELAAKESLIYGLRTErkvwGQELACQSSTLSQSRGKLEAQIESLCR 790
Cdd:PRK02224 518 REDLEELIAERRetieEKRERAEELRERAAELEAEAEEKREAAAEAEEE----AEEAREEVAELNSKLAELKERIESLER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 791 ENESL--RKSHESDCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLLQEQI--ALIEKcSQEQLNEKSSQLDSIVEKL 866
Cdd:PRK02224 594 IRTLLaaIADAEDEIERLREKREALAELNDERR---ERLAEKRERKRELEAEFdeARIEE-AREDKERAEEYLEQVEEKL 669
|
490 500
....*....|....*....|....*
gi 254675308 867 ERHNERKEKLKQQLKAKELELEEIR 891
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEELE 694
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
420-636 |
6.13e-05 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 47.02 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 420 LVEQLDQEREMRWKAEQTEKKLMDYIDEL---HKQADEKKDVHSQALITTDRLKDAIFKERHckaQLEIIVHRLQNEVKK 496
Cdd:COG1196 756 LQERLEELEEELESLEEALAKLKEEIEELeekRQALQEELEELEEELEEAERRLDALERELE---SLEQRRERLEQEIEE 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 497 LTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL---IQEVELKASAADREINLLRTSLHQEKQQVQQLHE 573
Cdd:COG1196 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELedeLKELEEEKEELEEELRELESELAELKEEIEKLRE 912
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 574 LLALKEQEHRQ---EIETRQFFTDAEFQDALTKRLCKEERKHE--------------QEVKEYQEKIDILNQQYLDLENE 636
Cdd:COG1196 913 RLEELEAKLERlevELPELEEELEEEYEDTLETELEREIERLEeeiealgpvnlraiEEYEEVEERYEELKSQREDLEEA 992
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
425-963 |
1.27e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 425 DQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQA----LITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIE 500
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAenarLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 501 LMKARDQQEDHIRhlrTLERALEKMEKQKAQQQAAQIRLIQEVElKASAADREINLLRTSLHQEKQQVQQLHELLalkeq 580
Cdd:pfam05483 249 ITEKENKMKDLTF---LLEESRDKANQLEEKTKLQDENLKELIE-KKDHLTKELEDIKMSLQRSMSTQKALEEDL----- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 581 ehrqEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQqyldlenefriALTVEARRFKDVQDGFEDVAT 660
Cdd:pfam05483 320 ----QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE-----------LLRTEQQRLEKNEDQLKIITM 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 661 ELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSE---VCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKH 737
Cdd:pfam05483 385 ELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEkkqFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKT 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 738 EKTQLISELaakESLIYGLRTErKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQN 817
Cdd:pfam05483 465 SEEHYLKEV---EDLKTELEKE-KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 818 ETIRKLKDSLQEKDGQIKLLQEQIalieKCSQEQLNEKSSQLDSIVEKLERHNERKEK----LKQQLKAKELELEEIRKA 893
Cdd:pfam05483 541 EKEMNLRDELESVREEFIQKGDEV----KCKLDKSEENARSIEYEVLKKEKQMKILENkcnnLKKQIENKNKNIEELHQE 616
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308 894 YSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERD---KSLELQKDAMEKLQNMDDAFRRQVDEIVE 963
Cdd:pfam05483 617 NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDnyqKEIEDKKISEEKLLEEVEKAKAIADEAVK 689
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
603-975 |
1.28e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 603 KRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFrialtVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSL 682
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-----FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 683 IKDLTcmvkEQKTKLSEVCKLKQEAAANLQNQINTLE--ILIEDDKQKSIQIELLKHEKTQLI---------SELAAKES 751
Cdd:TIGR00606 669 ITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQskLRLAPDKLKSTESELKKKEKRRDEmlglapgrqSIIDLKEK 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 752 LIYGLRTERKVWGQELACQSSTLSQSRGKLE----------------AQIESLCRENESLRKSHESDCDALRIKckiieD 815
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGtimpeeesakvcltdvTIMERFQMELKDVERKIAQQAAKLQGS-----D 819
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 816 QNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQlNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYS 895
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 896 TLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANE 975
Cdd:TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETE 978
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
433-938 |
1.31e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 433 KAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAifkerhcKAQLEIIVHrlqnEVKKLTIELMKARDQQEDHI 512
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEK-------EKELEEVLR----EINEISSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 513 RHLRTLERALEKMEKQKAQQQAAQIRLiQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQ------------ 580
Cdd:PRK03918 228 KEVKELEELKEEIEELEKELESLEGSK-RKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsefyeeyl 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 581 EHRQEIETRqfFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRI-----ALTVEARRFKDVQDGF 655
Cdd:PRK03918 307 DELREIEKR--LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeeakAKKEELERLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 656 --EDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSE---------VCK--LKQEAAANLQNQInTLEIL- 721
Cdd:PRK03918 385 tpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpVCGreLTEEHRKELLEEY-TAELKr 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 722 IEDDKQKSI-QIELLKHEKTQLISELAAKESLIyglrTERKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKshe 800
Cdd:PRK03918 464 IEKELKEIEeKERKLRKELRELEKVLKKESELI----KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK--- 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 801 sdcdaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQL 880
Cdd:PRK03918 537 -----LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308 881 KAKELELEEIRKAYSTLNKKWHDKGELLSHLEM---QVKEVKEKFEDKERKLKAERDKSLE 938
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEElrkELEELEKKYSEEEYEELREEYLELS 672
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
759-978 |
1.81e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227278 [Multi-domain] Cd Length: 420 Bit Score: 45.10 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 759 ERKVWGQELACQSSTL---SQSRGKLEAQIESLCRENESL---RKSHESDCDALRikcKIIEDQNETIRKLKDSLQEkdg 832
Cdd:COG4942 39 QLKQIQKEIAALEKKIreqQDQRAKLEKQLKSLETEIASLeaqLIETADDLKKLR---KQIADLNARLNALEVQERE--- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 833 QIKLLQEQIALIEKCS-----QEQLNEKSSQLDSIVEKLERH-----NERKEKLKQQLKAKELELEEIRKAYSTLNKKWH 902
Cdd:COG4942 113 QRRRLAEQLAALQRSGrnpppALLVSPEDAQRSVRLAIYYGAlnparAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 903 DKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAME---KLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQK 978
Cdd:COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRlknEIASAEAAAAKAREAAAAAEAAAARARAAEAKR 271
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
82-122 |
1.89e-04 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 432794 [Multi-domain] Cd Length: 44 Bit Score: 39.92 E-value: 1.89e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 254675308 82 TKLCTLNLSCNLITRVEGLEALVNLTKLNLSYN-HINDLSGL 122
Cdd:pfam12799 1 PNLEVLDLSNNQITDLPPLAKLPNLETLDLSGNnKITDLSDL 42
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
588-931 |
2.37e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 45.14 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 588 TRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKID--------------ILNQQYLD-------------LENEFRIA 640
Cdd:COG0419 88 EREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEellgldkdtftrsvYLPQGEFDaflkskpkerkeiLDELFGLE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 641 LTVEAR-RFKDVQDGFEDVATELAKSKHALIwaQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLE 719
Cdd:COG0419 168 KYEKLSeLLKEVIKEAKAKIEELEGQLSELL--EDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELE 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 720 ILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEaQIESLCRENESLRKSH 799
Cdd:COG0419 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE-GLRALLEELEELLEKL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 800 ESDCDALrikcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQialIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQ 879
Cdd:COG0419 325 KSLEERL----EKLEEKLEKLESELEELAEEKNELAKLLEE---RLKELEERLEELEKELEKALERLKQLEEAIQELKEE 397
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 254675308 880 LKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKA 931
Cdd:COG0419 398 LAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELM 449
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
32-142 |
2.98e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 43.88 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 32 SELSLDSSIHAINLHCNNISK--ISSIDHIW----NLRHLDLSSNQISQI------EGLNTLTKLCTLNLSCNLITRVeG 99
Cdd:cd00116 159 KALRANRDLKELNLANNGIGDagIRALAEGLkancNLEVLDLNNNGLTDEgasalaETLASLKSLEVLNLGDNNLTDA-G 237
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 254675308 100 LEALVN--------LTKLNLSYNHINDLSGLMPLHGLKYK--LRYIDLHSNYI 142
Cdd:cd00116 238 AAALASallspnisLLTLSLSCNDITDDGAKDLAEVLAEKesLLELDLRGNKF 290
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
422-1013 |
3.09e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 422 EQLDQEREMRwKAEQTEKklmdyIDELHKQADEKKDVHSQALITTDRLKDAIFK-ERHCKAQLEIIVHRLQNEVKKLTIE 500
Cdd:PTZ00121 1209 EEERKAEEAR-KAEDAKK-----AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 501 LMKARDqqedhIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVqqlhELLALKEQ 580
Cdd:PTZ00121 1283 LKKAEE-----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA----EAAKAEAE 1353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 581 EHRQEIETrqfftdAEFQDALTKRLCKEERKHEQEVKEYQEKIDilnqqyldlenefrialtvEARRFKDVQDGFEDVAT 660
Cdd:PTZ00121 1354 AAADEAEA------AEEKAEAAEKKKEEAKKKADAAKKKAEEKK-------------------KADEAKKKAEEDKKKAD 1408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 661 ELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKT 740
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 741 QLISELAAKESLIYGLRTERKVWGQELacqsSTLSQSRGKLEAQIESLCRENESLRKSHE-SDCDALRIKCKIieDQNET 819
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEA----KKAEEAKKADEAKKAEEAKKADEAKKAEEkKKADELKKAEEL--KKAEE 1562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 820 IRKLKDSLQEKDGQIKLLQEqiALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKlKQQLKAKEL-ELEEIRKAYSTLN 898
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRK--AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE-EAKIKAEELkKAEEEKKKVEQLK 1639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 899 KKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKlQNMDDAFRRQVDEIVEAHQ-----AEIMQLA 973
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE-KKAAEALKKEAEEAKKAEElkkkeAEEKKKA 1718
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 254675308 974 NEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIK 1013
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
710-957 |
3.57e-04 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 44.25 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 710 NLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELAcqsstlSQSRGKLEAQIEsLC 789
Cdd:COG4372 68 NLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELA------AARQNLAKAQQE-LA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 790 RENESLRKshesdcdaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIalieKCSQEQLNEKSSQLDSIVEKLERH 869
Cdd:COG4372 141 RLTKQAQD--------LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL----KSQVLDLKLRSAQIEQEAQNLATR 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 870 NERKEKLKQQLKAKELELEEIRKAYSTLNKKwhdkgelLSHLEMQVKEVKEKFEDKERKLKaERDKSLELQKDAMEKLQN 949
Cdd:COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQ-------ISQKAQQIAARAEQIRERERQLQ-RLETAQARLEQEVAQLEA 280
|
....*...
gi 254675308 950 MDDAFRRQ 957
Cdd:COG4372 281 YYQAYVRL 288
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ... |
406-1025 |
4.09e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 406 KVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIF----KERHCKA 481
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEyyqlKEKLELE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 482 QLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSL 561
Cdd:pfam02463 223 EEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 562 HQEKQQVQQLHELLAL-KEQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIA 640
Cdd:pfam02463 303 LKLERRKVDDEEKLKEsEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 641 LTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEI 720
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 721 LIEDDKQKSIQIELLKHEKTQLISELAAKESL-----------IYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLC 789
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKleersqkeskaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 790 RENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERH 869
Cdd:pfam02463 543 VAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRA 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 870 NERKEKLKQQLKAKELELEEIRKaySTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQN 949
Cdd:pfam02463 623 KVVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675308 950 MDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDCANlkvQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN---EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
38-116 |
4.30e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.43 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 38 SSIHAINLHCNNISKI--SSIDHIWNLRHLDLSSNQISQIEGlntltklctlnlscnlitrvEGLEALVNLTKLNLSYNH 115
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLddGAFKGLSNLKVLDLSNNLLTTLSP--------------------GAFSGLPSLRYLDLSGNR 60
|
.
gi 254675308 116 I 116
Cdd:pfam13855 61 L 61
|
|
| TIGR03545 |
TIGR03545 |
TIGR03545 family protein; This model represents a relatively rare but broadly distributed ... |
849-1013 |
5.80e-04 |
|
TIGR03545 family protein; This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Pssm-ID: 274640 Cd Length: 555 Bit Score: 43.55 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 849 QEQLNEKSSQLDSIVEKLERHNerkeklkqqLKAKELeLEEIRKAYSTLNKKWHDK------GELLSHLEMQVKEVKEK- 921
Cdd:TIGR03545 138 SSELKKVDSQLPDPRALLKGED---------LKTVET-AEEIEKSLKAMQQKWKKRkkdlpnKQDLEEYKKRLEAIKKKd 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 922 -------FEDKER--KLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQ-KYIDCANLKVQQVE 991
Cdd:TIGR03545 208 iknplelQKIKEEfdKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAiKSGDLKNFAVDLFG 287
|
170 180
....*....|....*....|..
gi 254675308 992 DEMRGLLDETCKNKKMMEEKIK 1013
Cdd:TIGR03545 288 PEIRKYLQKFLKYYDQAEPLLN 309
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
549-980 |
7.14e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 549 AADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFF-TDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILN 627
Cdd:pfam10174 237 MKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYkSHSKFMKNKIDQLKQELSKKESELLALQTKLETLT 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 628 QQYLDLENEFRI---ALTVEARRFKDVQD-------GFEDVATELAKSKHALiwaQRKENESSSL---IKDLTCM--VKE 692
Cdd:pfam10174 317 NQNSDCKQHIEVlkeSLTAKEQRAAILQTevdalrlRLEEKESFLNKKTKQL---QDLTEEKSTLageIRDLKDMldVKE 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 693 QKT--------KLSEVCKLKQEAAANLQNQINTLE-----------ILIEDDKQKSIQIELLKHEKT------------- 740
Cdd:pfam10174 394 RKInvlqkkieNLQEQLRDKDKQLAGLKERVKSLQtdssntdtaltTLEEALSEKERIIERLKEQREredrerleelesl 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 741 -QLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcrenESLRKSHESDCDALRIKCKIIEDQNET 819
Cdd:pfam10174 474 kKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSL----EIAVEQKKEECSKLENQLKKAHNAEEA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 820 IRKLKDSLQekdgQIKLLQEQIAL-IEKCSQEQL-------------NEKSSQlDSIVEKLERHNER--KEKLKQQLKAK 883
Cdd:pfam10174 550 VRTNPEIND----RIRLLEQEVARyKEESGKAQAeverllgilreveNEKNDK-DKKIAELESLTLRqmKEQNKKVANIK 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 884 ELELEEIRKAYSTLNKKWHDKGELL-SHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEK---LQNMDDAFRRQVD 959
Cdd:pfam10174 625 HGQQEMKKKGAQLLEEARRREDNLAdNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKdghLTNLRAERRKQLE 704
|
490 500
....*....|....*....|.
gi 254675308 960 EIVEAHQAEIMQLANEKQKYI 980
Cdd:pfam10174 705 EILEMKQEALLAAISEKDANI 725
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
735-1025 |
8.90e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 735 LKHEKTQLISELAAKESLIYGLRTERkvwgQELACQSS-------TLSQSRGKLEAQIESLCRENESLRKSHESDCDALR 807
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKL----ETLTNQNSdckqhieVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 808 IKCKIIEDQNE-------TIRKLKDSLQEKDGQIKLLQEQIALIekcsQEQLNEKSSQLDSIVEK--------------- 865
Cdd:pfam10174 363 KKTKQLQDLTEekstlagEIRDLKDMLDVKERKINVLQKKIENL----QEQLRDKDKQLAGLKERvkslqtdssntdtal 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 866 --LERHNERKEKLKQQLK-AKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDkeRKLKAERDKSLELQKD 942
Cdd:pfam10174 439 ttLEEALSEKERIIERLKeQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLID--LKEHASSLASSGLKKD 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 943 AmeKLQNMDDAFRRQVDEIV-------EAHQAE------------IMQLANEKQKYIDCANlKVQQVEDEMRGLLDETCK 1003
Cdd:pfam10174 517 S--KLKSLEIAVEQKKEECSklenqlkKAHNAEeavrtnpeindrIRLLEQEVARYKEESG-KAQAEVERLLGILREVEN 593
|
330 340
....*....|....*....|..
gi 254675308 1004 NKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam10174 594 EKNDKDKKIAELESLTLRQMKE 615
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
737-929 |
9.43e-04 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 434815 [Multi-domain] Cd Length: 193 Bit Score: 41.42 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 737 HEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKlEAQIESLCReneslrkSHESDCDALRIKCKIIEDQ 816
Cdd:pfam15619 11 HKIKELQNELAELQRKLEELRKENKLLKRLQRRQEKALGKYEDT-ESELPQLIA-------RHNEEVRVLRERLRRSQEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 817 NetiRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQ-LNEK---SSQLDSIVEKLERHNERKEKLKQQLkakELELEEIRK 892
Cdd:pfam15619 83 E---RDLERKLKEKEAELLRLRDELKKLKKLSEDKnLAEReelQKKLAQLEAKLEEKEEKIQELERKL---ELEEKNFRR 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 254675308 893 AYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKL 929
Cdd:pfam15619 157 QLAAEKKKHKEAQEEVKILQEEIERLQQKLKEKEREL 193
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
30-115 |
1.05e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 227223 [Multi-domain] Cd Length: 394 Bit Score: 42.65 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 30 SISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITrveGLEALVNLTKL 109
Cdd:COG4886 247 LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT---LKALELKLNSI 323
|
....*.
gi 254675308 110 NLSYNH 115
Cdd:COG4886 324 LLNNNI 329
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
105-172 |
1.15e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.89 E-value: 1.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308 105 NLTKLNLSYNHINDLSGLMpLHGLKyKLRYIDLHSNYIDSIHhlLQCTVGLHFLTNLILekdgEGNPI 172
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGA-FKGLS-NLKVLDLSNNLLTTLS--PGAFSGLPSLRYLDL----SGNRL 61
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
781-952 |
1.42e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 428520 [Multi-domain] Cd Length: 660 Bit Score: 42.41 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 781 LEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLLQEQIALIEKCSQEQ--------- 851
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELERKASALARQLERES---DRNQELQKRIRLLEKREAEAEEALREQaelnrlkkk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 852 --------LNEKSSQL-------DSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVK 916
Cdd:pfam05557 84 nlealnkkLNEKESQLadareviSCLKNELSELRRQIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQS 163
|
170 180 190
....*....|....*....|....*....|....*....
gi 254675308 917 EVKE---KFEDKERKLKAERDKSLELqKDAMEKLQNMDD 952
Cdd:pfam05557 164 SLAEaeqRIKELEFEIQSQEQDSEIV-KNSKSELARIPE 201
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
778-892 |
1.84e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 778 RGKLEAQIESLCRENESLRKshESDCDALRIKCKIIEDQNETIRKLKDSLQ----EKDGQIKLLQEQiaLIEKcsQEQLN 853
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEkelrERRNELQKLEKR--LLQK--EENLD 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 254675308 854 EKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
422-638 |
2.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 422 EQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIEL 501
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 502 MKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL----------IQEVELKASAADREINLLRTSLHQEKQQVQQL 571
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLrseleelseeLRELESKRSELRRELEELREKLAQLELRLEGL 934
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675308 572 HELLAlkeqeHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFR 638
Cdd:TIGR02168 935 EVRID-----NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE 996
|
|
| YhaN |
COG4717 |
Uncharacterized protein YhaN, contains AAA domain [Function unknown]; |
397-924 |
2.15e-03 |
|
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 227061 [Multi-domain] Cd Length: 984 Bit Score: 42.14 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 397 LDEQKTGVIKVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDYID------ELHKQADEKKDVHSQALITTDRL- 469
Cdd:COG4717 187 LEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRalrdavELWPRLQEWKQLEQELTRRREELa 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 470 ---KDAIFKERHCKAQLeiivHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQqqaaqiRLIQEVELK 546
Cdd:COG4717 267 tfpRDGVLRLEKREAHL----QKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSE------IKASAFELT 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 547 ASAADREINLLRTSLHQ----EKQQVQQLHELLALKEQEHRQeIETRQFftdaefQDALTKRLckeERKHEQEVKEYQEK 622
Cdd:COG4717 337 ETLAGIEADLRDKEEAAgngfEAERVHDLRSLECMLRYQSSQ-RELKQT------EAAYCKRL---DEKRLFEDEAEEEA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 623 IdilnQQYLDLENEFRIALTVEARRFKDVQDGFEDVATE-------LAKSKHALIWAQRKENESSSLIKDLTCMVKEQKT 695
Cdd:COG4717 407 R----QRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCnlydrrdTAWQKQRFLREKQTAFERQKTEHTKIIALRLAGM 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 696 KLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELA--AKESLIYGLRTERKVwGQELACQSST 773
Cdd:COG4717 483 LLVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELArlLITDELPELAVDLLV-QSRIRQHWQQ 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 774 LSQSRGKLEAQIESLCRENESLRKSHESDC-------DALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK 846
Cdd:COG4717 562 LRKALDQLEAAYEALEGRFAAAEAAMAEWQseweealDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLRE 641
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308 847 cSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAystLNKKWHDKGELLSHLEMQVKEVKEKFED 924
Cdd:COG4717 642 -EQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLA---LEGNIERTKELNDELRAELELHRKEILD 715
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
811-993 |
2.23e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 433526 [Multi-domain] Cd Length: 200 Bit Score: 40.27 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 811 KIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQeQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEI 890
Cdd:pfam13851 19 DITRNNLELIKSLKEEIAEMKKKEERNEKLMSEIQQENK-RLTEPLQKAQEEVEELRKQLENYEKDKQSLKNLKARLKVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 891 RKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDK--ERKLKAErDKSLELQKdameKLQNMDDafrrqVDEIVEAHQAE 968
Cdd:pfam13851 98 EKELKDLKWEHEVLEQRFEKVERERDELYDKFEAAiqDVQQKTG-LKNLLLEK----KLQALGE-----TLEKKEAQLNE 167
|
170 180
....*....|....*....|....*
gi 254675308 969 IMQLANEKQKYIDCANLKVQQVEDE 993
Cdd:pfam13851 168 VLAAANLDPDALQAVTEKLEDVLES 192
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
61-125 |
3.11e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 41.37 E-value: 3.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 61 NLRHLDLSSNQISQI--EGLNTLTKLCTLNLSCNLITRV--EGLEALVNLTKLNLSYnhiNDLSGLMPL 125
Cdd:PLN00113 476 RLENLDLSRNQFSGAvpRKLGSLSELMQLKLSENKLSGEipDELSSCKKLVSLDLSH---NQLSGQIPA 541
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
47-142 |
3.24e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 41.37 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 47 CNNISKISSID---------------HIWNLRHLDLSSNQIS-QIEG--LNTLTKLCTLNLSCNLITRVEGLEALVNLTK 108
Cdd:PLN00113 65 CNNSSRVVSIDlsgknisgkissaifRLPYIQTINLSNNQLSgPIPDdiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144
|
90 100 110
....*....|....*....|....*....|....*
gi 254675308 109 LNLSYNHindLSGLMPLH-GLKYKLRYIDLHSNYI 142
Cdd:PLN00113 145 LDLSNNM---LSGEIPNDiGSFSSLKVLDLGGNVL 176
|
|
| COG1579 |
COG1579 |
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ... |
858-1026 |
3.63e-03 |
|
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];
Pssm-ID: 224495 [Multi-domain] Cd Length: 239 Bit Score: 40.04 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 858 QLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDksl 937
Cdd:COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 938 elQKDAMEKLQNMDDAFRRQVDeiVEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLAC 1017
Cdd:COG1579 88 --ERELRALNIEIQIAKERINS--LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163
|
....*....
gi 254675308 1018 AISEIQKEM 1026
Cdd:COG1579 164 KREELKEKL 172
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
572-1010 |
4.00e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 572 HELLALKEQEHRQEIETRQFFTDAEFQdaLTKRLCKEERKHEQEVKEYQEKidiLNQQYLDLENEFRIALTVEARRFKDV 651
Cdd:TIGR00618 178 YTQLALMEFAKKKSLHGKAELLTLRSQ--LLTLCTPCMPDTYHERKQVLEK---ELKHLREALQQTQQSHAYLTQKREAQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 652 QdgfedvatELAKSKHALIWAQRKENESSSLIKDLTCMVKE------------QKTKLSEVCKLKQEAAANLQNQINTLE 719
Cdd:TIGR00618 253 E--------EQLKKQQLLKQLRARIEELRAQEAVLEETQERinrarkaaplaaHIKAVTQIEQQAQRIHTELQSKMRSRA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 720 ILIEDdKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELaCQSSTLSQSRGKLEAQIESLcrenESLRKSH 799
Cdd:TIGR00618 325 KLLMK-RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS-CQQHTLTQHIHTLQQQKTTL----TQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 800 ESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQ 879
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 880 lkakeleleeirkaySTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKD----------------A 943
Cdd:TIGR00618 479 ---------------EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLtrrmqrgeqtyaqletS 543
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 944 MEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKY--IDCANLKVQQVEDEMRGLLDETCKNKKMMEE 1010
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDnrSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
420-1015 |
4.45e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 426331 [Multi-domain] Cd Length: 1081 Bit Score: 40.91 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 420 LVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKK----DVHSQALITTDRLKDAIFK---ERHCKAQLEIIVHRLQN 492
Cdd:pfam01576 192 LEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQaqiaELRAQLAKKEEELQAALARleeETAQKNAALKKLRELEA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 493 EVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKaqqqaaqirliqEVELKASAADREinlLRTSLHQEKQQVQQLH 572
Cdd:pfam01576 272 QLSELQEDLESERAARAKAEKQRRDLGEELEALKTEL------------EDTLDTTAAQQE---LRSKREQEVTELKKAL 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 573 ELLALKEQEHRQEIETRQFFTDAEFQDAL--TKR----LCKEERKHEQEVKEYQEKIDILNQQYLDLEnefrialtveaR 646
Cdd:pfam01576 337 EEETRSHEAQLQEMRQKHTQALEELTEQLeqAKRnkasLEKAKQALESENAELQAELRSLQQAKQDSE-----------H 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 647 RFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQnqiNTLEILIEDDK 726
Cdd:pfam01576 406 KRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ---DTQELLQEETR 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 727 QK---SIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIES---LCRENESLRKSHE 800
Cdd:pfam01576 483 QKlnlSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGrkrLQRELEALTQRLE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 801 SDCDAL----RIKCKIIEDQNETI------RKLKDSLQEKDGQI-KLLQEQIALIEKCSQE------QLNEKSSQLDSIV 863
Cdd:pfam01576 563 EKAAAYdkleKTKNRLQQELDDLLvdldhqRQLVSNLEKKQKKFdQMLAEEKAISARYAEErdraeaEAREKETKALSLA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 864 EKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQ--- 940
Cdd:pfam01576 643 RALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEvnm 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 941 ---KDAMEK-LQNMDDAF---RRQVDEIVeaHQAEIMQLANEKQKYIDCANLKvqQVEDEMRGLLDETCKNKKMMEEKIK 1013
Cdd:pfam01576 723 qalKAQFERdLQARDEQGeekRRQLVKQV--RELEAELEDERKQRAQAVAAKK--KLELDLKELEAQIEAANKGRDEAVK 798
|
..
gi 254675308 1014 QL 1015
Cdd:pfam01576 799 QL 800
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
401-629 |
5.06e-03 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 40.39 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 401 KTGVIKVDKNFSDNSTYRSLVEQLDQEREmrwkaeQTEKKLMDYIDELHKQADEKKDVHSQalitTDRLKDAIFKERHCK 480
Cdd:COG4372 70 RSGVFQLDDIRPQLRALRTELGTAQGEKR------AAETEREAARSELQKARQEREAVRQE----LAAARQNLAKAQQEL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 481 AQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLR-- 558
Cdd:COG4372 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEel 219
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675308 559 TSLHQEKQQVQQLHELLALKEQEHRQEIETRQffTDAEFQDALTKRLCKEERKHEQEVKE----YQEKIDILNQQ 629
Cdd:COG4372 220 ARRAAAAQQTAQAIQQRDAQISQKAQQIAARA--EQIRERERQLQRLETAQARLEQEVAQleayYQAYVRLRQQA 292
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
672-1025 |
6.16e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 672 AQRKENESSSLIKDLTCMVKEQKTK------LSEVCKLKQEAAANLQNQINTLEILIED----DKQKSIQIELLKHEKTQ 741
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKekelknLDKNLNKDEEKINNSNNKIKILEQQIKDlndkLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 742 LISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRG---KLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNE 818
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTeikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 819 TIRKLKD----------SLQEKDGQIKLLQEQIALIEKCS----------QEQLNEKSSQLDSIVEKLERHNERKEKLKQ 878
Cdd:TIGR04523 188 NIDKIKNkllklelllsNLKKKIQKNKSLESQISELKKQNnqlkdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 879 QLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQ-----VKEVKEKFEDKERKLKAERDK---------SLELQKDAM 944
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQisqnnkiisQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 945 EKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQK 1024
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ-EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
.
gi 254675308 1025 E 1025
Cdd:TIGR04523 427 E 427
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
790-892 |
6.54e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 225288 [Multi-domain] Cd Length: 652 Bit Score: 40.46 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 790 RENESLRKSHESDCDaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQI-ALIEKCSQ--------EQLNEKSSQLD 860
Cdd:COG2433 402 RPREKEGTEEEERRE-ITVYEKRIKKLEETVERLEEENSELKRELEELKREIeKLESELERfrrevrdkVRKDREIRARD 480
|
90 100 110
....*....|....*....|....*....|..
gi 254675308 861 SIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:COG2433 481 RRIERLEKELEEKKKRVEELERKLAELRKMRK 512
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
43-79 |
6.61e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 432794 [Multi-domain] Cd Length: 44 Bit Score: 35.30 E-value: 6.61e-03
10 20 30
....*....|....*....|....*....|....*...
gi 254675308 43 INLHCNNISKISSIDHIWNLRHLDLSSN-QISQIEGLN 79
Cdd:pfam12799 6 LDLSNNQITDLPPLAKLPNLETLDLSGNnKITDLSDLA 43
|
|
| HEC1 |
COG5185 |
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ... |
696-981 |
8.36e-03 |
|
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227512 [Multi-domain] Cd Length: 622 Bit Score: 39.97 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 696 KLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTErkVWGQELACQSS--- 772
Cdd:COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS--VKSRKLEAQGIfks 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 773 ---------TLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAL 843
Cdd:COG5185 412 lektlrqydSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 844 IEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNkkwhdkgeLLSHLEMQvkevkekfe 923
Cdd:COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN--------LLSKTSIL--------- 554
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308 924 DKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAH---QAEIMQLANEKQKYID 981
Cdd:COG5185 555 DAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKiniQSSLEDLENELGKVIE 615
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
489-1003 |
9.02e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 489 RLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELK---------ASAADREINLLRT 559
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeqlkkqqlLKQLRARIEELRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 560 SL----HQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQDALTKRlcKEERKHEQEVKEYQEKID---ILNQQYLD 632
Cdd:TIGR00618 275 QEavleETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR--AKLLMKRAAHVKQQSSIEeqrRLLQTLHS 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 633 LENEFRIALTVEARRfkdvqdgFEDVATELAKSKHALIWAQRKE------NESSSLIKDLTCMVKEQKTKLSE------- 699
Cdd:TIGR00618 353 QEIHIRDAHEVATSI-------REISCQQHTLTQHIHTLQQQKTtltqklQSLCKELDILQREQATIDTRTSAfrdlqgq 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 700 ------VCKLKQEAAANLQNQIN---TLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELAC- 769
Cdd:TIGR00618 426 lahakkQQELQQRYAELCAAAITctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCp 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 770 ---------QSSTLSQSRGKLEAQIESLCRENESLRKSHES---DCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLL 837
Cdd:TIGR00618 506 lcgscihpnPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhQLTSERKQRASLKEQMQEIQ---QSFSILTQCDNRS 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 838 QEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKE 917
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308 918 V--------KEKFEDKERKLKAERDKSLELQKDaMEKLQNMDDAFRRQVDEIVEA--HQAEIMQLANEKQKYIDCANLKV 987
Cdd:TIGR00618 663 HalsirvlpKELLASRQLALQKMQSEKEQLTYW-KEMLAQCQTLLRELETHIEEYdrEFNEIENASSSLGSDLAAREDAL 741
|
570
....*....|....*.
gi 254675308 988 QQVEDEMRGLLDETCK 1003
Cdd:TIGR00618 742 NQSLKELMHQARTVLK 757
|
|
| RRF |
pfam01765 |
Ribosome recycling factor; The ribosome recycling factor (RRF / ribosome release factor) ... |
915-969 |
9.22e-03 |
|
Ribosome recycling factor; The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Pssm-ID: 426417 [Multi-domain] Cd Length: 163 Bit Score: 38.19 E-value: 9.22e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308 915 VKEVKEKFE--------------DKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEI 969
Cdd:pfam01765 95 VKQAKKLAEeakvairnirrdanDKLKKLEKDKEISEDELKKAEKEIQKLTDKYIKKIDELLKAKEKEI 163
|
|
|