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Conserved domains on  [gi|254675308|ref|NP_001157051|]
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leucine-rich repeat and coiled-coil domain-containing protein 1 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
25-197 3.10e-27

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 110.65  E-value: 3.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   25 DKGLHSISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGLEALV 104
Cdd:cd21340    11 DKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLT 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  105 N------------------------------LTKLNLSYNHINDLSGLMPLHglkyKLRYIDLHSNYIDSIHHLLQCTVG 154
Cdd:cd21340    91 NleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSLEPLAPLR----NLEQLDASNNQISDLEELLDLLSS 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 254675308  155 LHFLTNLILEkdgeGNPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:cd21340   167 WPSLRELDLT----GNPVCKKPKYRDKIILASKSLEVLDGKEI 205
SbcC super family cl33865
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
421-952 4.30e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0419:

Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 73.64  E-value: 4.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  421 VEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLK-----DAIFKERHCKAQ-----LEIIVHRL 490
Cdd:COG0419   221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKireeeLRELERLLEELEekierLEELEREI 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  491 QNEVKKLtIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQ 570
Cdd:COG0419   301 EELEEEL-EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  571 LHELL-----ALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERkheqEVKEYQEKIDILNQQYLDLENEFRIALTVEA 645
Cdd:COG0419   380 ALERLkqleeAIQELKEELAELSAALEEIQEELEELEKELEELER----ELEELEEEIKKLEEQINQLESKELMIAELAG 455
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  646 RRFKDV---QDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILI 722
Cdd:COG0419   456 AGEKCPvcgQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  723 EDDKQKSIQIELLKHEKT--QLISELAAKESLIYGLRTERK-----VWGQELACQSSTLSQSRGKLEAQIESLCRENESL 795
Cdd:COG0419   536 EKLENLLEELEELKEKLQlqQLKEELRQLEDRLQELKELLEelrllRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  796 RKSHESDCDALRIKCKI---------IEDQNETIRKLKDSLQEKDGQIKLLQEQIALIE--KCSQEQLNEKSSQLDSIVE 864
Cdd:COG0419   616 LQSLELSEAENELEEAEeeleselekLNLQAELEELLQAALEELEEKVEELEAEIRRELqrIENEEQLEEKLEELEQLEE 695
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  865 KLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEmQVKEVKEKFEDKERKLKAERDKSLELQKDAM 944
Cdd:COG0419   696 ELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE-LLEELREKLGKAGLRADILRNLLAQIEAEAN 774

                  ....*...
gi 254675308  945 EKLQNMDD 952
Cdd:COG0419   775 EILSKLSL 782
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
25-197 3.10e-27

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 110.65  E-value: 3.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   25 DKGLHSISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGLEALV 104
Cdd:cd21340    11 DKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLT 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  105 N------------------------------LTKLNLSYNHINDLSGLMPLHglkyKLRYIDLHSNYIDSIHHLLQCTVG 154
Cdd:cd21340    91 NleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSLEPLAPLR----NLEQLDASNNQISDLEELLDLLSS 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 254675308  155 LHFLTNLILEkdgeGNPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:cd21340   167 WPSLRELDLT----GNPVCKKPKYRDKIILASKSLEVLDGKEI 205
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
421-952 4.30e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 73.64  E-value: 4.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  421 VEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLK-----DAIFKERHCKAQ-----LEIIVHRL 490
Cdd:COG0419   221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKireeeLRELERLLEELEekierLEELEREI 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  491 QNEVKKLtIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQ 570
Cdd:COG0419   301 EELEEEL-EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  571 LHELL-----ALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERkheqEVKEYQEKIDILNQQYLDLENEFRIALTVEA 645
Cdd:COG0419   380 ALERLkqleeAIQELKEELAELSAALEEIQEELEELEKELEELER----ELEELEEEIKKLEEQINQLESKELMIAELAG 455
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  646 RRFKDV---QDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILI 722
Cdd:COG0419   456 AGEKCPvcgQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  723 EDDKQKSIQIELLKHEKT--QLISELAAKESLIYGLRTERK-----VWGQELACQSSTLSQSRGKLEAQIESLCRENESL 795
Cdd:COG0419   536 EKLENLLEELEELKEKLQlqQLKEELRQLEDRLQELKELLEelrllRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  796 RKSHESDCDALRIKCKI---------IEDQNETIRKLKDSLQEKDGQIKLLQEQIALIE--KCSQEQLNEKSSQLDSIVE 864
Cdd:COG0419   616 LQSLELSEAENELEEAEeeleselekLNLQAELEELLQAALEELEEKVEELEAEIRRELqrIENEEQLEEKLEELEQLEE 695
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  865 KLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEmQVKEVKEKFEDKERKLKAERDKSLELQKDAM 944
Cdd:COG0419   696 ELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE-LLEELREKLGKAGLRADILRNLLAQIEAEAN 774

                  ....*...
gi 254675308  945 EKLQNMDD 952
Cdd:COG0419   775 EILSKLSL 782
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
646-1026 6.23e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 6.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   646 RRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDD 725
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   726 KQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcRENESLRKSHESDCDA 805
Cdd:TIGR02168  757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAA 835
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   806 LRikcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKEL 885
Cdd:TIGR02168  836 TE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELES 908
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   886 ELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKErklkaerdkSLELqkDAMEKLQNMDDAFRRQVDEIVEAH 965
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY---------SLTL--EEAEALENKIEDDEEEARRRLKRL 977
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308   966 QAEIMQLANekqkyidcANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKEM 1026
Cdd:TIGR02168  978 ENKIKELGP--------VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA 1030
LRR_9 pfam14580
Leucine-rich repeat;
65-197 1.29e-08

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 55.54  E-value: 1.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308    65 LDLSSNQISQIEGLNTLTKLCTLNLSCNLITRV-EGL-EALVNLTKLNLSYNHINDLSGLMPLHGLKyKLRYIDLHSNyi 142
Cdd:pfam14580   47 IDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLK-KLTFLSLLRN-- 123
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 254675308   143 dsihhllqctvglhfltnlilekdgegnPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:pfam14580  124 ----------------------------PVTNKPHYRLYVIYKVPQLRLLDFRKV 150
PTZ00121 PTZ00121
MAEBL; Provisional
372-984 2.07e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 55.53  E-value: 2.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  372 RKMRQPYLRDLYVRSSLVNCNNLRDLDEQKTGVIKVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDY---IDEL 448
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAkkkADAA 1334
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  449 HKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQ---NEVKKLTIELMKA----RDQQEDHIRHLRTLERA 521
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKkkaDAAKKKAEEKKKAdeakKKAEEDKKKADELKKAA 1414
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  522 LEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSlhQEKQQVQQLHEllalKEQEHRQEIETRQFFTDAEFQDAL 601
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA--EEAKKAEEAKK----KAEEAKKADEAKKKAEEAKKADEA 1488
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  602 TKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIALTVEARRFKDVQDGFEDV--ATELAKSKHALIWAQRKENES 679
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKAEELKKAEEKKKAEE 1568
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  680 SSLIKDLtcmvKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTE 759
Cdd:PTZ00121 1569 AKKAEED----KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  760 RKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQN--ETIRKLKDSLQEKDGQIKLL 837
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkaEELKKKEAEEKKKAEELKKA 1724
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  838 QEqialIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMqvke 917
Cdd:PTZ00121 1725 EE----ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV---- 1796
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308  918 vkekfedkERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQL--ANEKQKYIDCAN 984
Cdd:PTZ00121 1797 --------DKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLeeADAFEKHKFNKN 1857
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-230 3.51e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 227223 [Multi-domain]  Cd Length: 394  Bit Score: 53.82  E-value: 3.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   28 LHSISELSLDSSIHAINLHCNNISK-ISSIDHIWNLRHLDLSSNQISQIEGLNTLTK--LCTLNLSCNLITRV-EGLEAL 103
Cdd:COG4886    83 LDGSENLLNLLPLPSLDLNLNRLRSnISELLELTNLTSLDLDNNNITDIPPLIGLLKsnLKELDLSDNKIESLpSPLRNL 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  104 VNLTKLNLSYNHINDLSglmPLHGLKYKLRYIDLHSNYIDSIHhllqctvGLHFLTNLILEKDGEGNPICLIPGyraiIL 183
Cdd:COG4886   163 PNLKNLDLSFNDLSDLP---KLLSNLSNLNNLDLSGNKISDLP-------PEIELLSALEELDLSNNSIIELLS----SL 228
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 254675308  184 QTLPQLRILDCKNIFGEPVSLEEINSSHLQCLEgLLDNLVSSDSPLN 230
Cdd:COG4886   229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLD-LSNNQISSISSLG 274
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
507-892 1.23e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 52.20  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   507 QQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLhellalkEQEHRQEI 586
Cdd:pfam07888   35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEEL-------EEKYKELS 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   587 ETRQFFTdAEFqdaltKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEF-RIALTVE--ARRFKDVQDGFEDVATELa 663
Cdd:pfam07888  108 RSGEELA-EEK-----DALLAQRAESEARIRELEEDIKTLTQRVLERETELeRMKERVKkaGAQRKEEEAERKQLQAKL- 180
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   664 kskhaliwaQRKENESSSLIKDLtcmvKEQKTKLSEvcklKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLI 743
Cdd:pfam07888  181 ---------QQTEEELRSLSKEF----QELRNSLAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQ 243
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   744 SELAAKESLIYGLRTERKVWGQ--------------ELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDAlrik 809
Cdd:pfam07888  244 ERLNASERKVEGLGEELSSMAAqrdrtqaelhqarlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDR---- 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   810 ckiIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERhnERKEKLKQQLKAKELeLEE 889
Cdd:pfam07888  320 ---IEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRV--AQKEKEQLQAEKQEL-LEY 393

                   ...
gi 254675308   890 IRK 892
Cdd:pfam07888  394 IRQ 396
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
61-125 3.11e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.37  E-value: 3.11e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308   61 NLRHLDLSSNQISQI--EGLNTLTKLCTLNLSCNLITRV--EGLEALVNLTKLNLSYnhiNDLSGLMPL 125
Cdd:PLN00113  476 RLENLDLSRNQFSGAvpRKLGSLSELMQLKLSENKLSGEipDELSSCKKLVSLDLSH---NQLSGQIPA 541
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
25-197 3.10e-27

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 110.65  E-value: 3.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   25 DKGLHSISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGLEALV 104
Cdd:cd21340    11 DKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLT 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  105 N------------------------------LTKLNLSYNHINDLSGLMPLHglkyKLRYIDLHSNYIDSIHHLLQCTVG 154
Cdd:cd21340    91 NleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSLEPLAPLR----NLEQLDASNNQISDLEELLDLLSS 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 254675308  155 LHFLTNLILEkdgeGNPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:cd21340   167 WPSLRELDLT----GNPVCKKPKYRDKIILASKSLEVLDGKEI 205
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
421-952 4.30e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 73.64  E-value: 4.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  421 VEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLK-----DAIFKERHCKAQ-----LEIIVHRL 490
Cdd:COG0419   221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKireeeLRELERLLEELEekierLEELEREI 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  491 QNEVKKLtIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQ 570
Cdd:COG0419   301 EELEEEL-EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  571 LHELL-----ALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERkheqEVKEYQEKIDILNQQYLDLENEFRIALTVEA 645
Cdd:COG0419   380 ALERLkqleeAIQELKEELAELSAALEEIQEELEELEKELEELER----ELEELEEEIKKLEEQINQLESKELMIAELAG 455
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  646 RRFKDV---QDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILI 722
Cdd:COG0419   456 AGEKCPvcgQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  723 EDDKQKSIQIELLKHEKT--QLISELAAKESLIYGLRTERK-----VWGQELACQSSTLSQSRGKLEAQIESLCRENESL 795
Cdd:COG0419   536 EKLENLLEELEELKEKLQlqQLKEELRQLEDRLQELKELLEelrllRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  796 RKSHESDCDALRIKCKI---------IEDQNETIRKLKDSLQEKDGQIKLLQEQIALIE--KCSQEQLNEKSSQLDSIVE 864
Cdd:COG0419   616 LQSLELSEAENELEEAEeeleselekLNLQAELEELLQAALEELEEKVEELEAEIRRELqrIENEEQLEEKLEELEQLEE 695
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  865 KLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEmQVKEVKEKFEDKERKLKAERDKSLELQKDAM 944
Cdd:COG0419   696 ELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE-LLEELREKLGKAGLRADILRNLLAQIEAEAN 774

                  ....*...
gi 254675308  945 EKLQNMDD 952
Cdd:COG0419   775 EILSKLSL 782
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
418-1026 3.60e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 70.90  E-value: 3.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  418 RSLVEQLDQEREMRWKAEQTEKKLMDYIDELhKQADEKKDVHSQALITTDRLKDAIFKERhcKAQLEIIVHRLQNEVKKL 497
Cdd:COG1196   305 SLLRERLEELENELEELEERLEELKEKIEAL-KEELEERETLLEELEQLLAELEEAKEEL--EEKLSALLEELEELFEAL 381
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  498 TIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQ---IRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHEL 574
Cdd:COG1196   382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLedlKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  575 LALKEQEHRQeietrqfftdaefqdaltkrLCKEERKHEQEVKEYQEKIDILNQQyLDLENEFRIALTVEARRFKDVQDG 654
Cdd:COG1196   462 LKELERELAE--------------------LQEELQRLEKELSSLEARLDRLEAE-QRASQGVRAVLEALESGLPGVYGP 520
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  655 FED------------------------VATELAKSKHALIWAQRKENESSSLIKDLtcmVKEQKTKLSEVCKLKQEAAAN 710
Cdd:COG1196   521 VAElikvkekyetaleaalgnrlqavvVENEEVAKKAIEFLKENKAGRATFLPLDR---IKPLRSLKSDAAPGFLGLASD 597
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  711 L-------QNQINTL--EILIEDDKQKSIQIELLKHEKTQLIS----ELAAKESLIYGLRTERKVWGQELacQSSTLSQS 777
Cdd:COG1196   598 LidfdpkyEPAVRFVlgDTLVVDDLEQARRLARKLRIKYRIVTldgdLVEPSGSITGGSRNKRSSLAQKR--ELKELEEE 675
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  778 RGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK----------C 847
Cdd:COG1196   676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEeleeleeeleE 755
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  848 SQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKER 927
Cdd:COG1196   756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  928 KLKaerdkSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYidcanlkvQQVEDEMRGLLDETCKNKKM 1007
Cdd:COG1196   836 EIE-----ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL--------EEEKEELEEELRELESELAE 902
                         650
                  ....*....|....*....
gi 254675308 1008 MEEKIKQLACAISEIQKEM 1026
Cdd:COG1196   903 LKEEIEKLRERLEELEAKL 921
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
638-1021 6.69e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 66.66  E-value: 6.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  638 RIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTKLSEVCKLKQEAAANLQNQINT 717
Cdd:COG1196   666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL----ERQLEELKRELAALEEELEQLQSRLEE 741
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  718 LEILIEddkQKSIQIELLKHEKTQLISELAAKESLIYGLRTERkvwgQELACQSSTLSQSRGKLEAQIESLCRENESLRK 797
Cdd:COG1196   742 LEEELE---ELEEELEELQERLEELEEELESLEEALAKLKEEI----EELEEKRQALQEELEELEEELEEAERRLDALER 814
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  798 SHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIekcsQEQLNEKSSQLDSIVEKLERHNERKEKLK 877
Cdd:COG1196   815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL----KEELEELEAEKEELEDELKELEEEKEELE 890
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  878 QQLKAKELELEEIRKAYSTLNKKWHDkgellshLEMQVKEVKEKFEDKERKLKAERDKSLElqkdamEKLQNMDDAFRRQ 957
Cdd:COG1196   891 EELRELESELAELKEEIEKLRERLEE-------LEAKLERLEVELPELEEELEEEYEDTLE------TELEREIERLEEE 957
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675308  958 VDEIVEAHQAEIMQLANEKQKYiDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISE 1021
Cdd:COG1196   958 IEALGPVNLRAIEEYEEVEERY-EELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
613-964 5.53e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 63.58  E-value: 5.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  613 EQEVKEYQEKIDILNQQYLDLENEFRIA------LTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDL 686
Cdd:COG1196   666 KRELKELEEELAELEAQLEKLEEELKSLknelrsLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  687 TCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:COG1196   746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESdcdalrIKCKiIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK 846
Cdd:COG1196   826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEE------LKEE-LEELEAEKEELEDELKELEEEKEELEEELRELES 898
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  847 csqeQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAysTLNKKWHDKgelLSHLEMQVKEVK------- 919
Cdd:COG1196   899 ----ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED--TLETELERE---IERLEEEIEALGpvnlrai 969
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 254675308  920 ---EKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEA 964
Cdd:COG1196   970 eeyEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
710-956 5.67e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 63.58  E-value: 5.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  710 NLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIyglrteRKVWgQELACQSSTLSQSRGKLEAQIESLC 789
Cdd:COG1196   236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL------REEL-EELQEELLELKEEIEELEGEISLLR 308
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  790 RENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLL--------------------------QEQIAL 843
Cdd:COG1196   309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELeeakeeleeklsalleeleelfealrEELAEL 388
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  844 IEKCS--QEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEK 921
Cdd:COG1196   389 EAELAeiRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 254675308  922 FEDKERKLKAERD--KSLELQKDAMEKLQNMDDAFRR 956
Cdd:COG1196   469 LAELQEELQRLEKelSSLEARLDRLEAEQRASQGVRA 505
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
646-1026 6.23e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 6.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   646 RRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDD 725
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   726 KQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcRENESLRKSHESDCDA 805
Cdd:TIGR02168  757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAA 835
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   806 LRikcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKEL 885
Cdd:TIGR02168  836 TE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELES 908
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   886 ELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKErklkaerdkSLELqkDAMEKLQNMDDAFRRQVDEIVEAH 965
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY---------SLTL--EEAEALENKIEDDEEEARRRLKRL 977
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308   966 QAEIMQLANekqkyidcANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKEM 1026
Cdd:TIGR02168  978 ENKIKELGP--------VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA 1030
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
656-1011 8.79e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.16  E-value: 8.79e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   656 EDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELL 735
Cdd:TIGR02169  677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   736 KHEKTQLISELAAKESLIyglrterkvwgqelacqsstlsqsrGKLEAQIESLCReneslRKSHESdcdaLRIKCKIIED 815
Cdd:TIGR02169  757 KSELKELEARIEELEEDL-------------------------HKLEEALNDLEA-----RLSHSR----IPEIQAELSK 802
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   816 QNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQE---QLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:TIGR02169  803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQElqeQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   893 AystlnkkwhdkgelLSHLEMQVKEVKEKF---EDKERKLKAERDKSLELQKDAMEKLQN-------MDDAFRRQVDE-- 960
Cdd:TIGR02169  883 R--------------LGDLKKERDELEAQLrelERKIEELEAQIEKKRKRLSELKAKLEAleeelseIEDPKGEDEEIpe 948
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....
gi 254675308   961 ---IVEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEK 1011
Cdd:TIGR02169  949 eelSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
423-1010 1.17e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 62.77  E-value: 1.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   423 QLDQEREMRWKAEQTEkkLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIELM 502
Cdd:TIGR02168  333 DELAEELAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   503 KARDQQEDHIRHLRTLERALEKMEkqkaqqqaaqirlIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEH 582
Cdd:TIGR02168  411 RLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   583 RQeieTRQFFTDAEFQDALTKRLCKEERKHEQEVKEY---QEKIDILNQQYLDL---ENEFRIALTVEARRF------KD 650
Cdd:TIGR02168  478 DA---AERELAQLQARLDSLERLQENLEGFSEGVKALlknQSGLSGILGVLSELisvDEGYEAAIEAALGGRlqavvvEN 554
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   651 VQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSeVCKLKQEAAANLQNQINTL--EILIEDDKQK 728
Cdd:TIGR02168  555 LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG-VAKDLVKFDPKLRKALSYLlgGVLVVDDLDN 633
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   729 SIQIELLKHEKTQLIS---ELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDA 805
Cdd:TIGR02168  634 ALELAKKLRPGYRIVTldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   806 LRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQE----------QLNEKSSQLDSIVEKLERHNERKEK 875
Cdd:TIGR02168  714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieeleeRLEEAEEELAEAEAEIEELEAQIEQ 793
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   876 LKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKdAMEKLQNMDDAFR 955
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA-EIEELEELIEELE 872
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 254675308   956 RQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGLLDETCKNKKMMEE 1010
Cdd:TIGR02168  873 SELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRRELEELREKLAQ 926
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
439-1016 2.50e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 61.31  E-value: 2.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  439 KKLMDYIDELHKQADEKKDVHSQALITTDRlkdaiFKERHCKAQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTL 518
Cdd:COG0419   170 EKLSELLKEVIKEAKAKIEELEGQLSELLE-----DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAEL 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  519 ERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQ 598
Cdd:COG0419   245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKL 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  599 DALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRI------ALTVEARRFKDVQDGFEDVATELAKSKHALIWA 672
Cdd:COG0419   325 KSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKEleerleELEKELEKALERLKQLEEAIQELKEELAELSAA 404
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  673 QRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELaaKESL 752
Cdd:COG0419   405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLEL--YELE 482
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  753 IYGLRTERKvwgqeLACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDG 832
Cdd:COG0419   483 LEELEEELS-----REKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQL 557
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  833 QIKLLQEQIALIE-KCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQqLKAKELELEEIRKAYSTLNKKW--HDKGELLS 909
Cdd:COG0419   558 KEELRQLEDRLQElKELLEELRLLRTRKEELEELRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENelEEAEEELE 636
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  910 HLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQnmDDAFRRQVDEIVEAHQAEIMQLANEKQKYIdcanlKVQQ 989
Cdd:COG0419   637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ--RIENEEQLEEKLEELEQLEEELEQLREELE-----ELLK 709
                         570       580
                  ....*....|....*....|....*..
gi 254675308  990 VEDEMRGLLDETCKNKKMMEEKIKQLA 1016
Cdd:COG0419   710 KLGEIEQLIEELESRKAELEELKKELE 736
LRR_9 pfam14580
Leucine-rich repeat;
65-197 1.29e-08

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 55.54  E-value: 1.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308    65 LDLSSNQISQIEGLNTLTKLCTLNLSCNLITRV-EGL-EALVNLTKLNLSYNHINDLSGLMPLHGLKyKLRYIDLHSNyi 142
Cdd:pfam14580   47 IDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLK-KLTFLSLLRN-- 123
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 254675308   143 dsihhllqctvglhfltnlilekdgegnPICLIPGYRAIILQTLPQLRILDCKNI 197
Cdd:pfam14580  124 ----------------------------PVTNKPHYRLYVIYKVPQLRLLDFRKV 150
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
544-840 2.18e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.53  E-value: 2.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   544 ELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRqEIETRQFFTDAEFQdalTKRLCKEERkhEQEVKEYQEKI 623
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELE-ELTAELQELEEKLE---ELRLEVSEL--EEEIEELQKEL 290
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   624 DILNQQYLDLENEFRIAltveARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKL 703
Cdd:TIGR02168  291 YALANEISRLEQQKQIL----RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   704 KQEaaanLQNQINTLEILIEDDKQKSIQielLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGK-LE 782
Cdd:TIGR02168  367 LEE----LESRLEELEEQLETLRSKVAQ---LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQ 439
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308   783 AQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQ 840
Cdd:TIGR02168  440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
417-1026 2.25e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.53  E-value: 2.25e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   417 YRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKD----VHSQALITTDRLKDAIFKERHCKAQLEIIV---HR 489
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseLEEEIEELQKELYALANEISRLEQQKQILRerlAN 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   490 LQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL---IQEVELKASAADREINLLRTSLHQEKQ 566
Cdd:TIGR02168  314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLEELEEQLETLRSKVAQLEL 393
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   567 QVQQLhellalkeQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRialtvear 646
Cdd:TIGR02168  394 QIASL--------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE-------- 457
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   647 rfkDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAAnLQNQINTLEILIEDDK 726
Cdd:TIGR02168  458 ---RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG-LSGILGVLSELISVDE 533
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   727 QKSIQIELLKHEKTQ--LISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcRENESLRKSHESDCD 804
Cdd:TIGR02168  534 GYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI-EGFLGVAKDLVKFDP 612
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   805 ALRI-------KCKIIEDQNETIRKLKDSLQE-----KDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNER 872
Cdd:TIGR02168  613 KLRKalsyllgGVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK 692
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   873 KEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEK-----------------FEDKERKLKAERDK 935
Cdd:TIGR02168  693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqleeriaqlskelteLEAEIEELEERLEE 772
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   936 SLELQKDAMEKLQNMD---DAFRRQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGL---LDETCKNKKMME 1009
Cdd:TIGR02168  773 AEEELAEAEAEIEELEaqiEQLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATerrLEDLEEQIEELS 851
                          650
                   ....*....|....*..
gi 254675308  1010 EKIKQLACAISEIQKEM 1026
Cdd:TIGR02168  852 EDIESLAAEIEELEELI 868
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
435-1025 3.41e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 57.72  E-value: 3.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   435 EQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEiivhRLQNEVKKLTIELMKARDQQEDHIRH 514
Cdd:TIGR04523   50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKIN----KLNSDLSKINSEIKNDKEQKNKLEVE 125
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   515 LRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTD 594
Cdd:TIGR04523  126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   595 AEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFrialtvearrfKDVQDGFEDVATELAKSKHALIWAQR 674
Cdd:TIGR04523  206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI-----------SNTQTQLNQLKDEQNKIKKQLSEKQK 274
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   675 KENESSSLIKDLTCMVKEQKTKLSEVCKLKQeaaanlQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELaakESLIY 754
Cdd:TIGR04523  275 ELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQL---NEQIS 345
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   755 GLRTERKvwgqELACQSSTLSQSRGKLEAQIESLCRENESLR---KSHESDCDALRIKCKIIEDQN----ETIRKLKDSL 827
Cdd:TIGR04523  346 QLKKELT----NSESENSEKQRELEEKQNEIEKLKKENQSYKqeiKNLESQINDLESKIQNQEKLNqqkdEQIKKLQQEK 421
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   828 QEKDGQIKLLQEQIALiEKCSQEQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGEL 907
Cdd:TIGR04523  422 ELLEKEIERLKETIIK-NNSEIKDLTNQDSVKELIIKNLDN---TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   908 LSHLEMQVKEVKEKFED----------KERKLKAERDKSLELQKDAMEKLQNMDDAFRR-QVDEIVEAHQAEIMQLANEk 976
Cdd:TIGR04523  498 LKKLNEEKKELEEKVKDltkkisslkeKIEKLESEKKEKESKISDLEDELNKDDFELKKeNLEKEIDEKNKEIEELKQT- 576
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*....
gi 254675308   977 QKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR04523  577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
607-897 1.52e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.49  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  607 KEERKHEQEVKEYQEKIDILNQQYldleNEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDL 686
Cdd:COG1196   218 LKAELRELELALLLAKLKELRKEL----EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  687 TCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:COG1196   294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIaliek 846
Cdd:COG1196   374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL----- 448
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 254675308  847 csqEQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKAYSTL 897
Cdd:COG1196   449 ---EELEEQLEELRDRLKELER---ELAELQEELQRLEKELSSLEARLDRL 493
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
467-1025 1.54e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.84  E-value: 1.54e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   467 DRLKDAifKERHCKAQLEIivHRLQNEVKKLTIEL---MKARDQQEDHIRHLRTLERALE-KMEKQKAQQQAAQIRLIQE 542
Cdd:TIGR02169  315 RELEDA--EERLAKLEAEI--DKLLAEIEELEREIeeeRKRRDKLTEEYAELKEELEDLRaELEEVDKEFAETRDELKDY 390
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   543 VElKASAADREINLLRTSLHQEKQQVQQLHELLAlkeqEHRQEIEtRQFFTDAEFQDALtKRLCKEERKHEQEVKEYQEK 622
Cdd:TIGR02169  391 RE-KLEKLKREINELKRELDRLQEELQRLSEELA----DLNAAIA-GIEAKINELEEEK-EDKALEIKKQEWKLEQLAAD 463
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   623 IDILNQQYLDLENEFRialtvearrfkDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCK 702
Cdd:TIGR02169  464 LSKYEQELYDLKEEYD-----------RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   703 LKQEAAANLQ----NQINTleILIEDDKQKSIQIELLKHEK--------------------------------------- 739
Cdd:TIGR02169  533 VGERYATAIEvaagNRLNN--VVVEDDAVAKEAIELLKRRKagratflplnkmrderrdlsilsedgvigfavdlvefdp 610
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   740 ------------TQLISELAAKESLIYGLR---------------TERKVWGQELACQSSTLSQSRGKLEAQIESLCREN 792
Cdd:TIGR02169  611 kyepafkyvfgdTLVVEDIEAARRLMGKYRmvtlegelfeksgamTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   793 ESLRK---SHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAL-IEKCSQEQLNEKSSqLDSIVEKLER 868
Cdd:TIGR02169  691 SSLQSelrRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQEIENVKSE-LKELEARIEE 769
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   869 HNERKEKLKQQLKAKELEL-----EEIRKAYSTLNKKWHDKGELLSHLE--MQVKEVKEKFEDKERKLKAERDKSLELQK 941
Cdd:TIGR02169  770 LEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEqkLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   942 DAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEK---QKYIDCANLKVQQVEDEMRGL---LDETCKNKKMMEEKIKQL 1015
Cdd:TIGR02169  850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlKKERDELEAQLRELERKIEELeaqIEKKRKRLSELKAKLEAL 929
                          650
                   ....*....|
gi 254675308  1016 ACAISEIQKE 1025
Cdd:TIGR02169  930 EEELSEIEDP 939
PTZ00121 PTZ00121
MAEBL; Provisional
372-984 2.07e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 55.53  E-value: 2.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  372 RKMRQPYLRDLYVRSSLVNCNNLRDLDEQKTGVIKVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDY---IDEL 448
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAkkkADAA 1334
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  449 HKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQ---NEVKKLTIELMKA----RDQQEDHIRHLRTLERA 521
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKkkaDAAKKKAEEKKKAdeakKKAEEDKKKADELKKAA 1414
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  522 LEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSlhQEKQQVQQLHEllalKEQEHRQEIETRQFFTDAEFQDAL 601
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA--EEAKKAEEAKK----KAEEAKKADEAKKKAEEAKKADEA 1488
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  602 TKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIALTVEARRFKDVQDGFEDV--ATELAKSKHALIWAQRKENES 679
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKAEELKKAEEKKKAEE 1568
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  680 SSLIKDLtcmvKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTE 759
Cdd:PTZ00121 1569 AKKAEED----KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  760 RKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQN--ETIRKLKDSLQEKDGQIKLL 837
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkaEELKKKEAEEKKKAEELKKA 1724
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  838 QEqialIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMqvke 917
Cdd:PTZ00121 1725 EE----ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV---- 1796
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308  918 vkekfedkERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQL--ANEKQKYIDCAN 984
Cdd:PTZ00121 1797 --------DKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLeeADAFEKHKFNKN 1857
46 PHA02562
endonuclease subunit; Provisional
690-942 2.94e-07

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 54.25  E-value: 2.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  690 VKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQLISELAAKESLIYGLRTERkvwgqelac 769
Cdd:PHA02562  197 IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKA---EIEELTDELLNLVMDIEDPSAALNKLNTAA--------- 264
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  770 qsstlsqsrGKLEAQIESLCRENESLRKSHEsdCDAlrikCK-IIEDQNETIRKLKDSLQEKDGQIKLLQEQIaliekcs 848
Cdd:PHA02562  265 ---------AKIKSKIEQFQKVIKMYEKGGV--CPT----CTqQISEGPDRITKIKDKLKELQHSLEKLDTAI------- 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  849 qEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERK 928
Cdd:PHA02562  323 -DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
                         250
                  ....*....|....
gi 254675308  929 lKAERDKSLELQKD 942
Cdd:PHA02562  402 -KYHRGIVTDLLKD 414
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
28-230 3.51e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 227223 [Multi-domain]  Cd Length: 394  Bit Score: 53.82  E-value: 3.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   28 LHSISELSLDSSIHAINLHCNNISK-ISSIDHIWNLRHLDLSSNQISQIEGLNTLTK--LCTLNLSCNLITRV-EGLEAL 103
Cdd:COG4886    83 LDGSENLLNLLPLPSLDLNLNRLRSnISELLELTNLTSLDLDNNNITDIPPLIGLLKsnLKELDLSDNKIESLpSPLRNL 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  104 VNLTKLNLSYNHINDLSglmPLHGLKYKLRYIDLHSNYIDSIHhllqctvGLHFLTNLILEKDGEGNPICLIPGyraiIL 183
Cdd:COG4886   163 PNLKNLDLSFNDLSDLP---KLLSNLSNLNNLDLSGNKISDLP-------PEIELLSALEELDLSNNSIIELLS----SL 228
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 254675308  184 QTLPQLRILDCKNIFGEPVSLEEINSSHLQCLEgLLDNLVSSDSPLN 230
Cdd:COG4886   229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLD-LSNNQISSISSLG 274
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
481-1026 5.70e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.95  E-value: 5.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  481 AQLEIIVHRLQNEVKKLTIELMKARDQQE--------------DHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELK 546
Cdd:COG1196   189 ERLEDLLEELEKQLEKLERQAEKAERYQElkaelrelelalllAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  547 ASAADREINLLRTSLHQEKQQVQQLHELLA--------LKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKE 618
Cdd:COG1196   269 IEELKSELEELREELEELQEELLELKEEIEelegeislLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  619 YQEKIDILNQQYLDLENEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLS 698
Cdd:COG1196   349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  699 EV---CKLKQEAAANLQNQINTLEILIEDDKQKSIQIE----LLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQS 771
Cdd:COG1196   429 ELeaeLEELQTELEELNEELEELEEQLEELRDRLKELErelaELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  772 STLSQSRG-------------KLEAQIESLC--------------------------------------RENESLRKSHE 800
Cdd:COG1196   509 ALESGLPGvygpvaelikvkeKYETALEAALgnrlqavvveneevakkaieflkenkagratflpldriKPLRSLKSDAA 588
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  801 SDCDALRIK---------------------CKIIEDQNETIRKLKDS---------LQEKDG-----------------Q 833
Cdd:COG1196   589 PGFLGLASDlidfdpkyepavrfvlgdtlvVDDLEQARRLARKLRIKyrivtldgdLVEPSGsitggsrnkrsslaqkrE 668
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  834 IKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEM 913
Cdd:COG1196   669 LKELEEELAELE----AQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  914 QVKEVKEKFED-KERKLKAERD-KSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEK----------QKYID 981
Cdd:COG1196   745 ELEELEEELEElQERLEELEEElESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLdalereleslEQRRE 824
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 254675308  982 CANLKVQQVEDEMRGL---LDETCKNKKMMEEKIKQLACAISEIQKEM 1026
Cdd:COG1196   825 RLEQEIEELEEEIEELeekLDELEEELEELEKELEELKEELEELEAEK 872
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
480-788 8.93e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.18  E-value: 8.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  480 KAQLEIIVHRLQNEVKKLTIELMKARDQQEDH---IRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINL 556
Cdd:COG1196   683 LEKLEEELKSLKNELRSLEDLLEELRRQLEELerqLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE 762
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  557 LRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQDALTKRLCKEERK--------HEQEVKEYQEKIDILNQ 628
Cdd:COG1196   763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELEsleqrrerLEQEIEELEEEIEELEE 842
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  629 QYLDLE---NEFRIALTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQ 705
Cdd:COG1196   843 KLDELEeelEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  706 EAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTqlISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQI 785
Cdd:COG1196   923 RLEVELPELEEELEEEYEDTLETELEREIERLEEE--IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000

                  ...
gi 254675308  786 ESL 788
Cdd:COG1196  1001 EEL 1003
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
507-892 1.23e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 52.20  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   507 QQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVQQLhellalkEQEHRQEI 586
Cdd:pfam07888   35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEEL-------EEKYKELS 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   587 ETRQFFTdAEFqdaltKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEF-RIALTVE--ARRFKDVQDGFEDVATELa 663
Cdd:pfam07888  108 RSGEELA-EEK-----DALLAQRAESEARIRELEEDIKTLTQRVLERETELeRMKERVKkaGAQRKEEEAERKQLQAKL- 180
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   664 kskhaliwaQRKENESSSLIKDLtcmvKEQKTKLSEvcklKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLI 743
Cdd:pfam07888  181 ---------QQTEEELRSLSKEF----QELRNSLAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQ 243
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   744 SELAAKESLIYGLRTERKVWGQ--------------ELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDAlrik 809
Cdd:pfam07888  244 ERLNASERKVEGLGEELSSMAAqrdrtqaelhqarlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDR---- 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   810 ckiIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERhnERKEKLKQQLKAKELeLEE 889
Cdd:pfam07888  320 ---IEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRV--AQKEKEQLQAEKQEL-LEY 393

                   ...
gi 254675308   890 IRK 892
Cdd:pfam07888  394 IRQ 396
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
480-1025 1.25e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 52.80  E-value: 1.25e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   480 KAQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRT----LERALEKMEKQKAQQQAAQIRLIQEVELKASAADREIN 555
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   556 LLRTS-------LHQEKQQVQQLHELLaLKEQEHRQEIetRQFFTDaeFQDALTKRLCKEERKHEQEVKEYQEKIDILNQ 628
Cdd:pfam15921  153 ELEAAkclkedmLNDSNTQIEQLRKMM-LSHEGVLQEI--RSILVD--FEEASGKKIYEHDSMSTIHFRSLGSAISKILR 227
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   629 QyLDLENEFrialtVEARRFKdVQDGFEDVATElAKSKHALIWAQRKENessslIKDLTCMVKEQKTKLSEVCKLKQEAA 708
Cdd:pfam15921  228 E-LDTEISY-----LKGRIFP-VEDQLEALKSE-SQNKIELLLQQHQDR-----IEQLISEHEVEITGLTEKASSARSQA 294
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   709 ANLQNQintLEILIEDDKQKSI----QIELLKHEKTQLISELAAKE------------------SLIYGLRTERKVWGQE 766
Cdd:pfam15921  295 NSIQSQ---LEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKrmyedkieelekqlvlanSELTEARTERDQFSQE 371
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   767 LACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDC------DALRikcKIIEDQNETIRKLKDSLQ----EKDGQikl 836
Cdd:pfam15921  372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsitiDHLR---RELDDRNMEVQRLEALLKamksECQGQ--- 445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   837 LQEQIALIEKcsqeqLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVK 916
Cdd:pfam15921  446 MERQMAAIQG-----KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEIT 520
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   917 EVKEKFEdkerkLKAERDKSLELQKDAMEKLQNMDDAFRRQV---DEIVEAHQAEI---MQLANEKQKYIDCANLKVQQV 990
Cdd:pfam15921  521 KLRSRVD-----LKLQELQHLKNEGDHLRNVQTECEALKLQMaekDKVIEILRQQIenmTQLVGQHGRTAGAMQVEKAQL 595
                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 254675308   991 EDEM---RGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam15921  596 EKEIndrRLELQEFKILKDKKDAKIRELEARVSDLELE 633
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
813-1025 1.47e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.37  E-value: 1.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   813 IEDQNETIRKLKDSLQEKDGQIKLLQEQ----IALIEKCSQE----------QLNEKSSQLDSIVEKLERHNERKEKLKQ 878
Cdd:TIGR02168  181 LERTRENLDRLEDILNELERQLKSLERQaekaERYKELKAELrelelallvlRLEELREELEELQEELKEAEEELEELTA 260
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   879 QLKAKELELEEIRKAYSTLNKK-------WHDKGELLSHLEMQVKEVKEKFEDKERKLK------AERDKSLELQKDAME 945
Cdd:TIGR02168  261 ELQELEEKLEELRLEVSELEEEieelqkeLYALANEISRLEQQKQILRERLANLERQLEeleaqlEELESKLDELAEELA 340
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   946 KLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDCanlkvQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR02168  341 ELEEKLEELKEELESLEAELEELEAELEELESRLEEL-----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
LRR_8 pfam13855
Leucine rich repeat;
82-142 2.60e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.59  E-value: 2.60e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308    82 TKLCTLNLSCNLITRVEG--LEALVNLTKLNLSYNHINDLSGLMpLHGLKyKLRYIDLHSNYI 142
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPGA-FSGLP-SLRYLDLSGNRL 61
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
420-979 2.81e-06

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 51.51  E-value: 2.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   420 LVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQ--NEVKKL 497
Cdd:TIGR00618  322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQklQSLCKE 401
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   498 TIELMKARDQQEDHIRHLRTLER---ALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQ---VQQL 571
Cdd:TIGR00618  402 LDILQREQATIDTRTSAFRDLQGqlaHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQlqtKEQI 481
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   572 HELLALKEQEH---------------RQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKE----YQEKIDILNQQYLD 632
Cdd:TIGR00618  482 HLQETRKKAVVlarllelqeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSeedvYHQLTSERKQRASL 561
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   633 LENEFRIaltvearrfkdvQDGFEDVATELAKSKHALIWAQRKENEssslIKDLTCMVKEQKTKLSEvckLKQEAAANLQ 712
Cdd:TIGR00618  562 KEQMQEI------------QQSFSILTQCDNRSKEDIPNLQNITVR----LQDLTEKLSEAEDMLAC---EQHALLRKLQ 622
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   713 NQINTLEILIEdDKQKSIQIELLKHEKTQLISELAAKESLIYGLRT---ERKVWGQ---ELACQSSTLSQSRGKLE--AQ 784
Cdd:TIGR00618  623 PEQDLQDVRLH-LQQCSQELALKLTALHALQLTLTQERVREHALSIrvlPKELLASrqlALQKMQSEKEQLTYWKEmlAQ 701
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   785 IESLCRENES----LRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKdgQIKLLQEQIALIEKCSQEQLNE--KSSQ 858
Cdd:TIGR00618  702 CQTLLRELEThieeYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ--ARTVLKARTEAHFNNNEEVTAAlqTGAE 779
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   859 LDSIVEKLERHNERKEKLKQQLKAKELELEEIRKaystlnkkwHDKGELLSHLEMQVKE---VKEKFEDKERKLKAERDK 935
Cdd:TIGR00618  780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP---------SDEDILNLQCETLVQEeeqFLSRLEEKSATLGEITHQ 850
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 254675308   936 SLELQKDAMEKLQNMDDAFR--RQVDEIVEAHQAEIMQLANEKQKY 979
Cdd:TIGR00618  851 LLKYEECSKQLAQLTQEQAKiiQLSDKLNGINQIKIQFDGDALIKF 896
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
663-941 3.84e-06

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 50.79  E-value: 3.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  663 AKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQL 742
Cdd:COG4372    56 AATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  743 ISELAAKESLIYGLRTERKvwgqelacqssTLSQSRGKLEAQIESLCRENESLRKSHE---SDCDALRIKCKIIEDQNET 819
Cdd:COG4372   136 QQELARLTKQAQDLQTRLK-----------TLAEQRRQLEAQAQSLQASQKQLQASATqlkSQVLDLKLRSAQIEQEAQN 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  820 IRKLKDSLQEKDGQIKLLQEQI-ALIEKCSQ-----EQLNEKSSQLDSIVEKLERhneRKEKLKQQLKAKELELEEIRKA 893
Cdd:COG4372   205 LATRANAAQARTEELARRAAAAqQTAQAIQQrdaqiSQKAQQIAARAEQIRERER---QLQRLETAQARLEQEVAQLEAY 281
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 254675308  894 YST-----LNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLK-AERDKSLELQK 941
Cdd:COG4372   282 YQAyvrlrQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSsANRPAALRLRR 335
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
804-1025 9.40e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.68  E-value: 9.40e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   804 DALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEqIALIEKCSQEQLNEKS-SQLDSIVEKLERHnerKEKLKQQLKA 882
Cdd:TIGR02169  187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE-YEGYELLKEKEALERQkEAIERQLASLEEE---LEKLTEEISE 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   883 KELELEEIRKAYSTLNKKWHDKGELLShleMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEI- 961
Cdd:TIGR02169  263 LEKRLEEIEQLLEELNKKIKDLGEEEQ---LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIe 339
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308   962 -----VEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGlLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:TIGR02169  340 elereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE-FAETRDELKDYREKLEKLKREINELKRE 407
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
386-940 1.83e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 48.94  E-value: 1.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   386 SSLVNCNNLRDLDEQKTGVIkvdknfsDNSTYRSLVEQLDQEREMRWKAEQTeKKLMD-------YIDELHKQADEKKdv 458
Cdd:pfam15921  356 SELTEARTERDQFSQESGNL-------DDQLQKLLADLHKREKELSLEKEQN-KRLWDrdtgnsiTIDHLRRELDDRN-- 425
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   459 hsqalITTDRLkDAIFK--ERHCKAQLEIIVHRLQ------NEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKA 530
Cdd:pfam15921  426 -----MEVQRL-EALLKamKSECQGQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS 499
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   531 QQQAAqirlIQEVELKASAADREINLLRTSLHQEKQQVQQLHellalKEQEHRQEIETRQfftdaefqDALTKRLCKEER 610
Cdd:pfam15921  500 DLTAS----LQEKERAIEATNAEITKLRSRVDLKLQELQHLK-----NEGDHLRNVQTEC--------EALKLQMAEKDK 562
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   611 KheqevkeyqekIDILNQQyldLENEFRIAltvearrfkdVQDGFEDVATELAKSKhaliwAQRKENESSSLIKDLTCMV 690
Cdd:pfam15921  563 V-----------IEILRQQ---IENMTQLV----------GQHGRTAGAMQVEKAQ-----LEKEINDRRLELQEFKILK 613
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   691 KEQKTKLSEvcklkqeaaanLQNQINTLEI----LIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:pfam15921  614 DKKDAKIRE-----------LEARVSDLELekvkLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   767 LACQSSTLSQSRGKLEAQIESLCRENESLR---KSHE-SDCDALRIKCkiiedqnetirKLKDSLQEKDGQIKLLQEQIA 842
Cdd:pfam15921  683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRntlKSMEgSDGHAMKVAM-----------GMQKQITAKRGQIDALQSKIQ 751
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   843 LIEKCSQEQLNEKSSQldsiveklerhNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKF 922
Cdd:pfam15921  752 FLEEAMTNANKEKHFL-----------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQF 820
                          570
                   ....*....|....*...
gi 254675308   923 EDKERKLKAERDKSLELQ 940
Cdd:pfam15921  821 AECQDIIQRQEQESVRLK 838
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
710-938 1.86e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 48.18  E-value: 1.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  710 NLQNQINTLEILIEDDKQK--SIQIELLKHEKT--QLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQI 785
Cdd:COG4942    42 QIQKEIAALEKKIREQQDQraKLEKQLKSLETEiaSLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  786 ESLCR--ENES--LRKSHESDCDALRIKcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAliekCSQEQLNEKSSQLDS 861
Cdd:COG4942   122 AALQRsgRNPPpaLLVSPEDAQRSVRLA-IYYGALNPARAERIDALKATLKQLAAVRAEIA----AEQAELTTLLSEQRA 196
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675308  862 IVEKLERHNERKEKLKQQLkAKELELEEIRKAysTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERklKAERDKSLE 938
Cdd:COG4942   197 QQAKLAQLLEERKKTLAQL-NSELSADQKKLE--ELRANESRLKNEIASAEAAAAKAREAAAAAEA--AAARARAAE 268
mukB PRK04863
chromosome partition protein MukB;
417-981 2.60e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 48.41  E-value: 2.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  417 YRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQ-----------------ADEKKDVHSQALITTDRLKDAI------ 473
Cdd:PRK04863  416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKeqeateellsleqklsvAQAAHSQFEQAYQLVRKIAGEVsrseaw 495
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  474 --FKE--------RHCKAQLEIIVHRLQnevkkltiELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEV 543
Cdd:PRK04863  496 dvAREllrrlreqRHLAEQLQQLRMRLS--------ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARL 567
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  544 ElKASAADREINLLRTSLHQEKQQVQQLHELLALKEQEHR--QEIETR---QF---FTDAEFQDALTKRLCKEERKHEQE 615
Cdd:PRK04863  568 E-SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLaaQDALARlreQSgeeFEDSQDVTEYMQQLLERERELTVE 646
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  616 VKEYQEKIDILNQQYLDL---ENEFRIALTVEARRFKDV--QDGFEDVATE--------LAKSKHALiwaqrkenesssL 682
Cdd:PRK04863  647 RDELAARKQALDEEIERLsqpGGSEDPRLNALAERFGGVllSEIYDDVSLEdapyfsalYGPARHAI------------V 714
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  683 IKDLtCMVKEQktklsevcklkqeaaanLQNQINTLE--ILIEDDKQK----SIQIELLKHEKTQLISEL---------- 746
Cdd:PRK04863  715 VPDL-SDAAEQ-----------------LAGLEDCPEdlYLIEGDPDSfddsVFSVEELEKAVVVKIADRqwrysrfpev 776
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  747 -----AAKESLIYGLRTERkvwgQELACQSSTLSQSRGKLEAQIESLCRE-NESLRKSHESDCDALrikckiIEDQNETI 820
Cdd:PRK04863  777 plfgrAAREKRIEQLRAER----EELAERYATLSFDVQKLQRLHQAFSRFiGSHLAVAFEADPEAE------LRQLNRRR 846
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  821 RKLKDSLQEKDG-------QIKLLQEQIALIEKCS-----------QEQLNEKSSQLDSIVEK---LERHNERKEKLKQQ 879
Cdd:PRK04863  847 VELERALADHESqeqqqrsQLEQAKEGLSALNRLLprlnlladetlADRVEEIREQLDEAEEAkrfVQQHGNALAQLEPI 926
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  880 ---LKAKELELEEIRKAYSTLNKKWHDkgellshLEMQVKEVKE--------KFEDKERKLKAERDKSLELQKDaMEKLQ 948
Cdd:PRK04863  927 vsvLQSDPEQFEQLKQDYQQAQQTQRD-------AKQQAFALTEvvqrrahfSYEDAAEMLAKNSDLNEKLRQR-LEQAE 998
                         650       660       670
                  ....*....|....*....|....*....|...
gi 254675308  949 NMddafRRQVDEIVEAHQAeimQLANEKQKYID 981
Cdd:PRK04863  999 QE----RTRAREQLRQAQA---QLAQYNQVLAS 1024
46 PHA02562
endonuclease subunit; Provisional
809-1015 2.70e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 48.09  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  809 KCKIIEDQNETIRKLKDSLQEkdgQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELE 888
Cdd:PHA02562  175 KIRELNQQIQTLDMKIDHIQQ---QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  889 EIRKAYSTLNK----------------KWHDKGELLSHLEMQVKEVKEKFEDKERKLKaERDKSLELQKDAMEKLQNMDD 952
Cdd:PHA02562  252 DPSAALNKLNTaaakikskieqfqkviKMYEKGGVCPTCTQQISEGPDRITKIKDKLK-ELQHSLEKLDTAIDELEEIMD 330
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308  953 AFRRQVDEIVEAHQaeimQLANEKQKYIDCANlKVQQVEDEMRGLLDETCKNKKMMEEKIKQL 1015
Cdd:PHA02562  331 EFNEQSKKLLELKN----KISTNKQSLITLVD-KAKKVKAAIEELQAEFVDNAEELAKLQDEL 388
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
542-1025 3.37e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 3.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  542 EVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEqEHRQEIETrqffTDAEFQDaLTKRLCKEERKHEqevkEYQE 621
Cdd:PRK02224  210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHE-ERREELET----LEAEIED-LRETIAETERERE----ELAE 279
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  622 KIDILNQQYLDLENEFRIAL-----------TVEARRfKDVQDGFEDVATELAKSKHAliwAQRKENESSSLikdltcmv 690
Cdd:PRK02224  280 EVRDLRERLEELEEERDDLLaeaglddadaeAVEARR-EELEDRDEELRDRLEECRVA---AQAHNEEAESL-------- 347
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  691 KEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQLISELAAKESLIYGLRTERkvwgQELACQ 770
Cdd:PRK02224  348 REDADDLEERAEELREEAAELESELEEAREAVEDRRE---EIEELEEEIEELRERFGDAPVDLGNAEDFL----EELREE 420
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  771 SSTLSQSRGKLEAQIESL---CRENESLRKshESDC--------DALRIKckIIEDQNETIRKLKDSLQEKDGQIKLLQE 839
Cdd:PRK02224  421 RDELREREAELEATLRTArerVEEAEALLE--AGKCpecgqpveGSPHVE--TIEEDRERVEELEAELEDLEEEVEEVEE 496
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  840 QIAliekcSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVK 919
Cdd:PRK02224  497 RLE-----RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  920 EKFEDKERKLkAERDKSLELQKDAMEKLQNMDDAfRRQVDEIVEaHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLD 999
Cdd:PRK02224  572 EEVAELNSKL-AELKERIESLERIRTLLAAIADA-EDEIERLRE-KREALAELNDERRERLAEKRERKRELEAEFDEARI 648
                         490       500       510
                  ....*....|....*....|....*....|....
gi 254675308 1000 ETCKNKKM--------MEEKIKQLACAISEIQKE 1025
Cdd:PRK02224  649 EEAREDKEraeeyleqVEEKLDELREERDDLQAE 682
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
467-766 3.55e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.76  E-value: 3.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   467 DRLKdaifKERHCKAQLEIIVHRLQN-EVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQA---AQIRLIQE 542
Cdd:TIGR02169  201 ERLR----REREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKrleEIEQLLEE 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   543 VELKASA-ADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQfFTDAEFQ------DALTKRLCKEERKHEQ- 614
Cdd:TIGR02169  277 LNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEIDkllaeiEELEREIEEERKRRDKl 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   615 --EVKEYQEKIDILNQQYLDLENEFRIALtveaRRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKE 692
Cdd:TIGR02169  356 teEYAELKEELEDLRAELEEVDKEFAETR----DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254675308   693 QKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQE 766
Cdd:TIGR02169  432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
61-101 4.20e-05

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 432794 [Multi-domain]  Cd Length: 44  Bit Score: 41.46  E-value: 4.20e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 254675308    61 NLRHLDLSSNQISQIEGLNTLTKLCTLNLS-CNLITRVEGLE 101
Cdd:pfam12799    2 NLEVLDLSNNQITDLPPLAKLPNLETLDLSgNNKITDLSDLA 43
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
507-930 4.74e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.37  E-value: 4.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   507 QQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLR---TSLHQEKQQVQQLHELLALKEQEHR 583
Cdd:TIGR02169  671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeiEQLEQEEEKLKERLEELEEDLSSLE 750
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   584 QEIETRqfftdaefqdaltkrlcKEERKH-EQEVKEYQEKIDILNQQYLDLENEFRialtveARRFKDVQDGFEDVATEL 662
Cdd:TIGR02169  751 QEIENV-----------------KSELKElEARIEELEEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLEEEV 807
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   663 AKSKHALIWAQRKENESSSLIKDLtcmvkeqktklsevcklkQEAAANLQNQINTLEILIEDDKQksiQIELLKHEKTQL 742
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYL------------------EKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEEL 866
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   743 ISELAAKESLIYGLRTERKvwgqelacqssTLSQSRGKLEAQIESLCREneslrkshesdcdalrikckiIEDQNETIRK 822
Cdd:TIGR02169  867 EEELEELEAALRDLESRLG-----------DLKKERDELEAQLRELERK---------------------IEELEAQIEK 914
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   823 LKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLD--SIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKK 900
Cdd:TIGR02169  915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
                          410       420       430
                   ....*....|....*....|....*....|
gi 254675308   901 whdkgelLSHLEMQVKEVKEKFEDKERKLK 930
Cdd:TIGR02169  995 -------RAKLEEERKAILERIEEYEKKKR 1017
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
728-1011 4.87e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 4.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   728 KSIQIELLKHEKTQLISELAAKESLIYGLRTERKvwgqelacqsstlsqsrgKLEAQIESLCRENESLRKSHESDCDALR 807
Cdd:TIGR02168  223 RELELALLVLRLEELREELEELQEELKEAEEELE------------------ELTAELQELEEKLEELRLEVSELEEEIE 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   808 IKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEkcsqEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELEL 887
Cdd:TIGR02168  285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   888 EEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFED--------KERK--LKAERDKSLELQKDAMEKLQNMD-DAFRR 956
Cdd:TIGR02168  361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneierlEARLerLEDRRERLQQEIEELLKKLEEAElKELQA 440
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308   957 QVDEI------VEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEK 1011
Cdd:TIGR02168  441 ELEELeeeleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
445-891 5.96e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.96  E-value: 5.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  445 IDELHKQADEKKDVHSQALITTDRLKDAIfkERHCKAQLEIivHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEK 524
Cdd:PRK02224  215 LAELDEEIERYEEQREQARETRDEADEVL--EEHEERREEL--ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  525 MEKQKAQqqaaqirLIQEVELKaSAADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIET-RQFFTDAEfQDALTK 603
Cdd:PRK02224  291 LEEERDD-------LLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESlREDADDLE-ERAEEL 361
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  604 R-----LCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIALTvearRFKDVQDGFEDVATELAK-------------- 664
Cdd:PRK02224  362 ReeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV----DLGNAEDFLEELREERDElrereaeleatlrt 437
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  665 --------------------------SKHALIWAQRKEN--ESSSLIKDLTCMVKEQKTKLSEVCKLKQEAA--ANLQNQ 714
Cdd:PRK02224  438 arerveeaealleagkcpecgqpvegSPHVETIEEDRERveELEAELEDLEEEVEEVEERLERAEDLVEAEDriERLEER 517
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  715 INTLEILIEDDK----QKSIQIELLKHEKTQLISELAAKESLIYGLRTErkvwGQELACQSSTLSQSRGKLEAQIESLCR 790
Cdd:PRK02224  518 REDLEELIAERRetieEKRERAEELRERAAELEAEAEEKREAAAEAEEE----AEEAREEVAELNSKLAELKERIESLER 593
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  791 ENESL--RKSHESDCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLLQEQI--ALIEKcSQEQLNEKSSQLDSIVEKL 866
Cdd:PRK02224  594 IRTLLaaIADAEDEIERLREKREALAELNDERR---ERLAEKRERKRELEAEFdeARIEE-AREDKERAEEYLEQVEEKL 669
                         490       500
                  ....*....|....*....|....*
gi 254675308  867 ERHNERKEKLKQQLKAKELELEEIR 891
Cdd:PRK02224  670 DELREERDDLQAEIGAVENELEELE 694
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
420-636 6.13e-05

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 47.02  E-value: 6.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  420 LVEQLDQEREMRWKAEQTEKKLMDYIDEL---HKQADEKKDVHSQALITTDRLKDAIFKERHckaQLEIIVHRLQNEVKK 496
Cdd:COG1196   756 LQERLEELEEELESLEEALAKLKEEIEELeekRQALQEELEELEEELEEAERRLDALERELE---SLEQRRERLEQEIEE 832
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  497 LTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL---IQEVELKASAADREINLLRTSLHQEKQQVQQLHE 573
Cdd:COG1196   833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELedeLKELEEEKEELEEELRELESELAELKEEIEKLRE 912
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  574 LLALKEQEHRQ---EIETRQFFTDAEFQDALTKRLCKEERKHE--------------QEVKEYQEKIDILNQQYLDLENE 636
Cdd:COG1196   913 RLEELEAKLERlevELPELEEELEEEYEDTLETELEREIERLEeeiealgpvnlraiEEYEEVEERYEELKSQREDLEEA 992
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
425-963 1.27e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 45.87  E-value: 1.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   425 DQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQA----LITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIE 500
Cdd:pfam05483  169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAenarLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   501 LMKARDQQEDHIRhlrTLERALEKMEKQKAQQQAAQIRLIQEVElKASAADREINLLRTSLHQEKQQVQQLHELLalkeq 580
Cdd:pfam05483  249 ITEKENKMKDLTF---LLEESRDKANQLEEKTKLQDENLKELIE-KKDHLTKELEDIKMSLQRSMSTQKALEEDL----- 319
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   581 ehrqEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQqyldlenefriALTVEARRFKDVQDGFEDVAT 660
Cdd:pfam05483  320 ----QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE-----------LLRTEQQRLEKNEDQLKIITM 384
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   661 ELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSE---VCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKH 737
Cdd:pfam05483  385 ELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEkkqFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKT 464
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   738 EKTQLISELaakESLIYGLRTErKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQN 817
Cdd:pfam05483  465 SEEHYLKEV---EDLKTELEKE-KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE 540
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   818 ETIRKLKDSLQEKDGQIKLLQEQIalieKCSQEQLNEKSSQLDSIVEKLERHNERKEK----LKQQLKAKELELEEIRKA 893
Cdd:pfam05483  541 EKEMNLRDELESVREEFIQKGDEV----KCKLDKSEENARSIEYEVLKKEKQMKILENkcnnLKKQIENKNKNIEELHQE 616
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 254675308   894 YSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERD---KSLELQKDAMEKLQNMDDAFRRQVDEIVE 963
Cdd:pfam05483  617 NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDnyqKEIEDKKISEEKLLEEVEKAKAIADEAVK 689
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
603-975 1.28e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 46.19  E-value: 1.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   603 KRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFrialtVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSL 682
Cdd:TIGR00606  594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-----FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   683 IKDLTcmvkEQKTKLSEVCKLKQEAAANLQNQINTLE--ILIEDDKQKSIQIELLKHEKTQLI---------SELAAKES 751
Cdd:TIGR00606  669 ITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQskLRLAPDKLKSTESELKKKEKRRDEmlglapgrqSIIDLKEK 744
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   752 LIYGLRTERKVWGQELACQSSTLSQSRGKLE----------------AQIESLCRENESLRKSHESDCDALRIKckiieD 815
Cdd:TIGR00606  745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGtimpeeesakvcltdvTIMERFQMELKDVERKIAQQAAKLQGS-----D 819
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   816 QNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQlNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYS 895
Cdd:TIGR00606  820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   896 TLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANE 975
Cdd:TIGR00606  899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETE 978
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
433-938 1.31e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  433 KAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAifkerhcKAQLEIIVHrlqnEVKKLTIELMKARDQQEDHI 512
Cdd:PRK03918  159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEK-------EKELEEVLR----EINEISSELPELREELEKLE 227
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  513 RHLRTLERALEKMEKQKAQQQAAQIRLiQEVELKASAADREINLLRTSLHQEKQQVQQLHELLALKEQ------------ 580
Cdd:PRK03918  228 KEVKELEELKEEIEELEKELESLEGSK-RKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsefyeeyl 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  581 EHRQEIETRqfFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRI-----ALTVEARRFKDVQDGF 655
Cdd:PRK03918  307 DELREIEKR--LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeeakAKKEELERLKKRLTGL 384
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  656 --EDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSE---------VCK--LKQEAAANLQNQInTLEIL- 721
Cdd:PRK03918  385 tpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpVCGreLTEEHRKELLEEY-TAELKr 463
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  722 IEDDKQKSI-QIELLKHEKTQLISELAAKESLIyglrTERKVWGQELACQSSTLSQSRGKLEAQIESLCRENESLRKshe 800
Cdd:PRK03918  464 IEKELKEIEeKERKLRKELRELEKVLKKESELI----KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK--- 536
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  801 sdcdaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQL 880
Cdd:PRK03918  537 -----LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE 611
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308  881 KAKELELEEIRKAYSTLNKKWHDKGELLSHLEM---QVKEVKEKFEDKERKLKAERDKSLE 938
Cdd:PRK03918  612 KELEREEKELKKLEEELDKAFEELAETEKRLEElrkELEELEKKYSEEEYEELREEYLELS 672
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
759-978 1.81e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 45.10  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  759 ERKVWGQELACQSSTL---SQSRGKLEAQIESLCRENESL---RKSHESDCDALRikcKIIEDQNETIRKLKDSLQEkdg 832
Cdd:COG4942    39 QLKQIQKEIAALEKKIreqQDQRAKLEKQLKSLETEIASLeaqLIETADDLKKLR---KQIADLNARLNALEVQERE--- 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  833 QIKLLQEQIALIEKCS-----QEQLNEKSSQLDSIVEKLERH-----NERKEKLKQQLKAKELELEEIRKAYSTLNKKWH 902
Cdd:COG4942   113 QRRRLAEQLAALQRSGrnpppALLVSPEDAQRSVRLAIYYGAlnparAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308  903 DKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAME---KLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQK 978
Cdd:COG4942   193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRlknEIASAEAAAAKAREAAAAAEAAAARARAAEAKR 271
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
82-122 1.89e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 432794 [Multi-domain]  Cd Length: 44  Bit Score: 39.92  E-value: 1.89e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 254675308    82 TKLCTLNLSCNLITRVEGLEALVNLTKLNLSYN-HINDLSGL 122
Cdd:pfam12799    1 PNLEVLDLSNNQITDLPPLAKLPNLETLDLSGNnKITDLSDL 42
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
588-931 2.37e-04

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 45.14  E-value: 2.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  588 TRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKID--------------ILNQQYLD-------------LENEFRIA 640
Cdd:COG0419    88 EREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEellgldkdtftrsvYLPQGEFDaflkskpkerkeiLDELFGLE 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  641 LTVEAR-RFKDVQDGFEDVATELAKSKHALIwaQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLE 719
Cdd:COG0419   168 KYEKLSeLLKEVIKEAKAKIEELEGQLSELL--EDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELE 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  720 ILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEaQIESLCRENESLRKSH 799
Cdd:COG0419   246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE-GLRALLEELEELLEKL 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  800 ESDCDALrikcKIIEDQNETIRKLKDSLQEKDGQIKLLQEQialIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQ 879
Cdd:COG0419   325 KSLEERL----EKLEEKLEKLESELEELAEEKNELAKLLEE---RLKELEERLEELEKELEKALERLKQLEEAIQELKEE 397
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254675308  880 LKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKA 931
Cdd:COG0419   398 LAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELM 449
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
32-142 2.98e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.88  E-value: 2.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   32 SELSLDSSIHAINLHCNNISK--ISSIDHIW----NLRHLDLSSNQISQI------EGLNTLTKLCTLNLSCNLITRVeG 99
Cdd:cd00116   159 KALRANRDLKELNLANNGIGDagIRALAEGLkancNLEVLDLNNNGLTDEgasalaETLASLKSLEVLNLGDNNLTDA-G 237
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 254675308  100 LEALVN--------LTKLNLSYNHINDLSGLMPLHGLKYK--LRYIDLHSNYI 142
Cdd:cd00116   238 AAALASallspnisLLTLSLSCNDITDDGAKDLAEVLAEKesLLELDLRGNKF 290
PTZ00121 PTZ00121
MAEBL; Provisional
422-1013 3.09e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  422 EQLDQEREMRwKAEQTEKklmdyIDELHKQADEKKDVHSQALITTDRLKDAIFK-ERHCKAQLEIIVHRLQNEVKKLTIE 500
Cdd:PTZ00121 1209 EEERKAEEAR-KAEDAKK-----AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADE 1282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  501 LMKARDqqedhIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSLHQEKQQVqqlhELLALKEQ 580
Cdd:PTZ00121 1283 LKKAEE-----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA----EAAKAEAE 1353
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  581 EHRQEIETrqfftdAEFQDALTKRLCKEERKHEQEVKEYQEKIDilnqqyldlenefrialtvEARRFKDVQDGFEDVAT 660
Cdd:PTZ00121 1354 AAADEAEA------AEEKAEAAEKKKEEAKKKADAAKKKAEEKK-------------------KADEAKKKAEEDKKKAD 1408
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  661 ELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKT 740
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  741 QLISELAAKESLIYGLRTERKVWGQELacqsSTLSQSRGKLEAQIESLCRENESLRKSHE-SDCDALRIKCKIieDQNET 819
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEA----KKAEEAKKADEAKKAEEAKKADEAKKAEEkKKADELKKAEEL--KKAEE 1562
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  820 IRKLKDSLQEKDGQIKLLQEqiALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKlKQQLKAKEL-ELEEIRKAYSTLN 898
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRK--AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE-EAKIKAEELkKAEEEKKKVEQLK 1639
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  899 KKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKlQNMDDAFRRQVDEIVEAHQ-----AEIMQLA 973
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE-KKAAEALKKEAEEAKKAEElkkkeAEEKKKA 1718
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|
gi 254675308  974 NEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIK 1013
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
710-957 3.57e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 44.25  E-value: 3.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  710 NLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELAcqsstlSQSRGKLEAQIEsLC 789
Cdd:COG4372    68 NLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELA------AARQNLAKAQQE-LA 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  790 RENESLRKshesdcdaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIalieKCSQEQLNEKSSQLDSIVEKLERH 869
Cdd:COG4372   141 RLTKQAQD--------LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL----KSQVLDLKLRSAQIEQEAQNLATR 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  870 NERKEKLKQQLKAKELELEEIRKAYSTLNKKwhdkgelLSHLEMQVKEVKEKFEDKERKLKaERDKSLELQKDAMEKLQN 949
Cdd:COG4372   209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQ-------ISQKAQQIAARAEQIRERERQLQ-RLETAQARLEQEVAQLEA 280

                  ....*...
gi 254675308  950 MDDAFRRQ 957
Cdd:COG4372   281 YYQAYVRL 288
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
406-1025 4.09e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 44.58  E-value: 4.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   406 KVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIF----KERHCKA 481
Cdd:pfam02463  143 KIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEyyqlKEKLELE 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   482 QLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLRTSL 561
Cdd:pfam02463  223 EEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 302
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   562 HQEKQQVQQLHELLAL-KEQEHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFRIA 640
Cdd:pfam02463  303 LKLERRKVDDEEKLKEsEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   641 LTVEARRFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQNQINTLEI 720
Cdd:pfam02463  383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   721 LIEDDKQKSIQIELLKHEKTQLISELAAKESL-----------IYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLC 789
Cdd:pfam02463  463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKleersqkeskaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   790 RENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERH 869
Cdd:pfam02463  543 VAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRA 622
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   870 NERKEKLKQQLKAKELELEEIRKaySTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEKLQN 949
Cdd:pfam02463  623 KVVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254675308   950 MDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDCANlkvQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam02463  701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN---EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
LRR_8 pfam13855
Leucine rich repeat;
38-116 4.30e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 4.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308    38 SSIHAINLHCNNISKI--SSIDHIWNLRHLDLSSNQISQIEGlntltklctlnlscnlitrvEGLEALVNLTKLNLSYNH 115
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLddGAFKGLSNLKVLDLSNNLLTTLSP--------------------GAFSGLPSLRYLDLSGNR 60

                   .
gi 254675308   116 I 116
Cdd:pfam13855   61 L 61
TIGR03545 TIGR03545
TIGR03545 family protein; This model represents a relatively rare but broadly distributed ...
849-1013 5.80e-04

TIGR03545 family protein; This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.


Pssm-ID: 274640  Cd Length: 555  Bit Score: 43.55  E-value: 5.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   849 QEQLNEKSSQLDSIVEKLERHNerkeklkqqLKAKELeLEEIRKAYSTLNKKWHDK------GELLSHLEMQVKEVKEK- 921
Cdd:TIGR03545  138 SSELKKVDSQLPDPRALLKGED---------LKTVET-AEEIEKSLKAMQQKWKKRkkdlpnKQDLEEYKKRLEAIKKKd 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   922 -------FEDKER--KLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQ-KYIDCANLKVQQVE 991
Cdd:TIGR03545  208 iknplelQKIKEEfdKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAiKSGDLKNFAVDLFG 287
                          170       180
                   ....*....|....*....|..
gi 254675308   992 DEMRGLLDETCKNKKMMEEKIK 1013
Cdd:TIGR03545  288 PEIRKYLQKFLKYYDQAEPLLN 309
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
549-980 7.14e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 43.66  E-value: 7.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   549 AADREINLLRTSLHQEKQQVQQLHELLALKEQEHRQEIETRQFF-TDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILN 627
Cdd:pfam10174  237 MKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYkSHSKFMKNKIDQLKQELSKKESELLALQTKLETLT 316
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   628 QQYLDLENEFRI---ALTVEARRFKDVQD-------GFEDVATELAKSKHALiwaQRKENESSSL---IKDLTCM--VKE 692
Cdd:pfam10174  317 NQNSDCKQHIEVlkeSLTAKEQRAAILQTevdalrlRLEEKESFLNKKTKQL---QDLTEEKSTLageIRDLKDMldVKE 393
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   693 QKT--------KLSEVCKLKQEAAANLQNQINTLE-----------ILIEDDKQKSIQIELLKHEKT------------- 740
Cdd:pfam10174  394 RKInvlqkkieNLQEQLRDKDKQLAGLKERVKSLQtdssntdtaltTLEEALSEKERIIERLKEQREredrerleelesl 473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   741 -QLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIESLcrenESLRKSHESDCDALRIKCKIIEDQNET 819
Cdd:pfam10174  474 kKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSL----EIAVEQKKEECSKLENQLKKAHNAEEA 549
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   820 IRKLKDSLQekdgQIKLLQEQIAL-IEKCSQEQL-------------NEKSSQlDSIVEKLERHNER--KEKLKQQLKAK 883
Cdd:pfam10174  550 VRTNPEIND----RIRLLEQEVARyKEESGKAQAeverllgilreveNEKNDK-DKKIAELESLTLRqmKEQNKKVANIK 624
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   884 ELELEEIRKAYSTLNKKWHDKGELL-SHLEMQVKEVKEKFEDKERKLKAERDKSLELQKDAMEK---LQNMDDAFRRQVD 959
Cdd:pfam10174  625 HGQQEMKKKGAQLLEEARRREDNLAdNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKdghLTNLRAERRKQLE 704
                          490       500
                   ....*....|....*....|.
gi 254675308   960 EIVEAHQAEIMQLANEKQKYI 980
Cdd:pfam10174  705 EILEMKQEALLAAISEKDANI 725
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
735-1025 8.90e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 43.27  E-value: 8.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   735 LKHEKTQLISELAAKESLIYGLRTERkvwgQELACQSS-------TLSQSRGKLEAQIESLCRENESLRKSHESDCDALR 807
Cdd:pfam10174  287 MKNKIDQLKQELSKKESELLALQTKL----ETLTNQNSdckqhieVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   808 IKCKIIEDQNE-------TIRKLKDSLQEKDGQIKLLQEQIALIekcsQEQLNEKSSQLDSIVEK--------------- 865
Cdd:pfam10174  363 KKTKQLQDLTEekstlagEIRDLKDMLDVKERKINVLQKKIENL----QEQLRDKDKQLAGLKERvkslqtdssntdtal 438
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   866 --LERHNERKEKLKQQLK-AKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDkeRKLKAERDKSLELQKD 942
Cdd:pfam10174  439 ttLEEALSEKERIIERLKeQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLID--LKEHASSLASSGLKKD 516
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   943 AmeKLQNMDDAFRRQVDEIV-------EAHQAE------------IMQLANEKQKYIDCANlKVQQVEDEMRGLLDETCK 1003
Cdd:pfam10174  517 S--KLKSLEIAVEQKKEECSklenqlkKAHNAEeavrtnpeindrIRLLEQEVARYKEESG-KAQAEVERLLGILREVEN 593
                          330       340
                   ....*....|....*....|..
gi 254675308  1004 NKKMMEEKIKQLACAISEIQKE 1025
Cdd:pfam10174  594 EKNDKDKKIAELESLTLRQMKE 615
Lebercilin pfam15619
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ...
737-929 9.43e-04

Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.


Pssm-ID: 434815 [Multi-domain]  Cd Length: 193  Bit Score: 41.42  E-value: 9.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   737 HEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKlEAQIESLCReneslrkSHESDCDALRIKCKIIEDQ 816
Cdd:pfam15619   11 HKIKELQNELAELQRKLEELRKENKLLKRLQRRQEKALGKYEDT-ESELPQLIA-------RHNEEVRVLRERLRRSQEK 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   817 NetiRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQ-LNEK---SSQLDSIVEKLERHNERKEKLKQQLkakELELEEIRK 892
Cdd:pfam15619   83 E---RDLERKLKEKEAELLRLRDELKKLKKLSEDKnLAEReelQKKLAQLEAKLEEKEEKIQELERKL---ELEEKNFRR 156
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 254675308   893 AYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKL 929
Cdd:pfam15619  157 QLAAEKKKHKEAQEEVKILQEEIERLQQKLKEKEREL 193
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
30-115 1.05e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 227223 [Multi-domain]  Cd Length: 394  Bit Score: 42.65  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   30 SISELSLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITrveGLEALVNLTKL 109
Cdd:COG4886   247 LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT---LKALELKLNSI 323

                  ....*.
gi 254675308  110 NLSYNH 115
Cdd:COG4886   324 LLNNNI 329
LRR_8 pfam13855
Leucine rich repeat;
105-172 1.15e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.89  E-value: 1.15e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308   105 NLTKLNLSYNHINDLSGLMpLHGLKyKLRYIDLHSNYIDSIHhlLQCTVGLHFLTNLILekdgEGNPI 172
Cdd:pfam13855    2 NLRSLDLSNNRLTSLDDGA-FKGLS-NLKVLDLSNNLLTTLS--PGAFSGLPSLRYLDL----SGNRL 61
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
781-952 1.42e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 42.41  E-value: 1.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   781 LEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLLQEQIALIEKCSQEQ--------- 851
Cdd:pfam05557    7 SKARLSQLQNEKKQMELEHKRARIELERKASALARQLERES---DRNQELQKRIRLLEKREAEAEEALREQaelnrlkkk 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   852 --------LNEKSSQL-------DSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVK 916
Cdd:pfam05557   84 nlealnkkLNEKESQLadareviSCLKNELSELRRQIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQS 163
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 254675308   917 EVKE---KFEDKERKLKAERDKSLELqKDAMEKLQNMDD 952
Cdd:pfam05557  164 SLAEaeqRIKELEFEIQSQEQDSEIV-KNSKSELARIPE 201
PRK12704 PRK12704
phosphodiesterase; Provisional
778-892 1.84e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  778 RGKLEAQIESLCRENESLRKshESDCDALRIKCKIIEDQNETIRKLKDSLQ----EKDGQIKLLQEQiaLIEKcsQEQLN 853
Cdd:PRK12704   26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEkelrERRNELQKLEKR--LLQK--EENLD 99
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 254675308  854 EKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:PRK12704  100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
422-638 2.06e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 2.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   422 EQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKKDVHSQALITTDRLKDAIFKERHCKAQLEIIVHRLQNEVKKLTIEL 501
Cdd:TIGR02168  775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   502 MKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRL----------IQEVELKASAADREINLLRTSLHQEKQQVQQL 571
Cdd:TIGR02168  855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLrseleelseeLRELESKRSELRRELEELREKLAQLELRLEGL 934
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 254675308   572 HELLAlkeqeHRQEIETRQFFTDAEFQDALTKRLCKEERKHEQEVKEYQEKIDILNQQYLDLENEFR 638
Cdd:TIGR02168  935 EVRID-----NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE 996
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
397-924 2.15e-03

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 42.14  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  397 LDEQKTGVIKVDKNFSDNSTYRSLVEQLDQEREMRWKAEQTEKKLMDYID------ELHKQADEKKDVHSQALITTDRL- 469
Cdd:COG4717   187 LEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRalrdavELWPRLQEWKQLEQELTRRREELa 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  470 ---KDAIFKERHCKAQLeiivHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQqqaaqiRLIQEVELK 546
Cdd:COG4717   267 tfpRDGVLRLEKREAHL----QKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSE------IKASAFELT 336
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  547 ASAADREINLLRTSLHQ----EKQQVQQLHELLALKEQEHRQeIETRQFftdaefQDALTKRLckeERKHEQEVKEYQEK 622
Cdd:COG4717   337 ETLAGIEADLRDKEEAAgngfEAERVHDLRSLECMLRYQSSQ-RELKQT------EAAYCKRL---DEKRLFEDEAEEEA 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  623 IdilnQQYLDLENEFRIALTVEARRFKDVQDGFEDVATE-------LAKSKHALIWAQRKENESSSLIKDLTCMVKEQKT 695
Cdd:COG4717   407 R----QRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCnlydrrdTAWQKQRFLREKQTAFERQKTEHTKIIALRLAGM 482
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  696 KLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELA--AKESLIYGLRTERKVwGQELACQSST 773
Cdd:COG4717   483 LLVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELArlLITDELPELAVDLLV-QSRIRQHWQQ 561
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  774 LSQSRGKLEAQIESLCRENESLRKSHESDC-------DALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEK 846
Cdd:COG4717   562 LRKALDQLEAAYEALEGRFAAAEAAMAEWQseweealDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLRE 641
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254675308  847 cSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAystLNKKWHDKGELLSHLEMQVKEVKEKFED 924
Cdd:COG4717   642 -EQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLA---LEGNIERTKELNDELRAELELHRKEILD 715
GAS pfam13851
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ...
811-993 2.23e-03

Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.


Pssm-ID: 433526 [Multi-domain]  Cd Length: 200  Bit Score: 40.27  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   811 KIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQeQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEI 890
Cdd:pfam13851   19 DITRNNLELIKSLKEEIAEMKKKEERNEKLMSEIQQENK-RLTEPLQKAQEEVEELRKQLENYEKDKQSLKNLKARLKVL 97
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   891 RKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDK--ERKLKAErDKSLELQKdameKLQNMDDafrrqVDEIVEAHQAE 968
Cdd:pfam13851   98 EKELKDLKWEHEVLEQRFEKVERERDELYDKFEAAiqDVQQKTG-LKNLLLEK----KLQALGE-----TLEKKEAQLNE 167
                          170       180
                   ....*....|....*....|....*
gi 254675308   969 IMQLANEKQKYIDCANLKVQQVEDE 993
Cdd:pfam13851  168 VLAAANLDPDALQAVTEKLEDVLES 192
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
61-125 3.11e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.37  E-value: 3.11e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308   61 NLRHLDLSSNQISQI--EGLNTLTKLCTLNLSCNLITRV--EGLEALVNLTKLNLSYnhiNDLSGLMPL 125
Cdd:PLN00113  476 RLENLDLSRNQFSGAvpRKLGSLSELMQLKLSENKLSGEipDELSSCKKLVSLDLSH---NQLSGQIPA 541
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
47-142 3.24e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.37  E-value: 3.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   47 CNNISKISSID---------------HIWNLRHLDLSSNQIS-QIEG--LNTLTKLCTLNLSCNLITRVEGLEALVNLTK 108
Cdd:PLN00113   65 CNNSSRVVSIDlsgknisgkissaifRLPYIQTINLSNNQLSgPIPDdiFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 254675308  109 LNLSYNHindLSGLMPLH-GLKYKLRYIDLHSNYI 142
Cdd:PLN00113  145 LDLSNNM---LSGEIPNDiGSFSSLKVLDLGGNVL 176
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
858-1026 3.63e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 40.04  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  858 QLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDksl 937
Cdd:COG1579    11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--- 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  938 elQKDAMEKLQNMDDAFRRQVDeiVEAHQAEIMQLANEKQKYIDCANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLAC 1017
Cdd:COG1579    88 --ERELRALNIEIQIAKERINS--LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163

                  ....*....
gi 254675308 1018 AISEIQKEM 1026
Cdd:COG1579   164 KREELKEKL 172
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
572-1010 4.00e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 41.11  E-value: 4.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   572 HELLALKEQEHRQEIETRQFFTDAEFQdaLTKRLCKEERKHEQEVKEYQEKidiLNQQYLDLENEFRIALTVEARRFKDV 651
Cdd:TIGR00618  178 YTQLALMEFAKKKSLHGKAELLTLRSQ--LLTLCTPCMPDTYHERKQVLEK---ELKHLREALQQTQQSHAYLTQKREAQ 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   652 QdgfedvatELAKSKHALIWAQRKENESSSLIKDLTCMVKE------------QKTKLSEVCKLKQEAAANLQNQINTLE 719
Cdd:TIGR00618  253 E--------EQLKKQQLLKQLRARIEELRAQEAVLEETQERinrarkaaplaaHIKAVTQIEQQAQRIHTELQSKMRSRA 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   720 ILIEDdKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELaCQSSTLSQSRGKLEAQIESLcrenESLRKSH 799
Cdd:TIGR00618  325 KLLMK-RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS-CQQHTLTQHIHTLQQQKTTL----TQKLQSL 398
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   800 ESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQ 879
Cdd:TIGR00618  399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK 478
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   880 lkakeleleeirkaySTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQKD----------------A 943
Cdd:TIGR00618  479 ---------------EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLtrrmqrgeqtyaqletS 543
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308   944 MEKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKY--IDCANLKVQQVEDEMRGLLDETCKNKKMMEE 1010
Cdd:TIGR00618  544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDnrSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
420-1015 4.45e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 40.91  E-value: 4.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   420 LVEQLDQEREMRWKAEQTEKKLMDYIDELHKQADEKK----DVHSQALITTDRLKDAIFK---ERHCKAQLEIIVHRLQN 492
Cdd:pfam01576  192 LEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQaqiaELRAQLAKKEEELQAALARleeETAQKNAALKKLRELEA 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   493 EVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKaqqqaaqirliqEVELKASAADREinlLRTSLHQEKQQVQQLH 572
Cdd:pfam01576  272 QLSELQEDLESERAARAKAEKQRRDLGEELEALKTEL------------EDTLDTTAAQQE---LRSKREQEVTELKKAL 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   573 ELLALKEQEHRQEIETRQFFTDAEFQDAL--TKR----LCKEERKHEQEVKEYQEKIDILNQQYLDLEnefrialtveaR 646
Cdd:pfam01576  337 EEETRSHEAQLQEMRQKHTQALEELTEQLeqAKRnkasLEKAKQALESENAELQAELRSLQQAKQDSE-----------H 405
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   647 RFKDVQDGFEDVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLSEVCKLKQEAAANLQnqiNTLEILIEDDK 726
Cdd:pfam01576  406 KRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ---DTQELLQEETR 482
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   727 QK---SIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRGKLEAQIES---LCRENESLRKSHE 800
Cdd:pfam01576  483 QKlnlSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGrkrLQRELEALTQRLE 562
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   801 SDCDAL----RIKCKIIEDQNETI------RKLKDSLQEKDGQI-KLLQEQIALIEKCSQE------QLNEKSSQLDSIV 863
Cdd:pfam01576  563 EKAAAYdkleKTKNRLQQELDDLLvdldhqRQLVSNLEKKQKKFdQMLAEEKAISARYAEErdraeaEAREKETKALSLA 642
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   864 EKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERKLKAERDKSLELQ--- 940
Cdd:pfam01576  643 RALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEvnm 722
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   941 ---KDAMEK-LQNMDDAF---RRQVDEIVeaHQAEIMQLANEKQKYIDCANLKvqQVEDEMRGLLDETCKNKKMMEEKIK 1013
Cdd:pfam01576  723 qalKAQFERdLQARDEQGeekRRQLVKQV--RELEAELEDERKQRAQAVAAKK--KLELDLKELEAQIEAANKGRDEAVK 798

                   ..
gi 254675308  1014 QL 1015
Cdd:pfam01576  799 QL 800
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
401-629 5.06e-03

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 40.39  E-value: 5.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  401 KTGVIKVDKNFSDNSTYRSLVEQLDQEREmrwkaeQTEKKLMDYIDELHKQADEKKDVHSQalitTDRLKDAIFKERHCK 480
Cdd:COG4372    70 RSGVFQLDDIRPQLRALRTELGTAQGEKR------AAETEREAARSELQKARQEREAVRQE----LAAARQNLAKAQQEL 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  481 AQLEIIVHRLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELKASAADREINLLR-- 558
Cdd:COG4372   140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEel 219
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 254675308  559 TSLHQEKQQVQQLHELLALKEQEHRQEIETRQffTDAEFQDALTKRLCKEERKHEQEVKE----YQEKIDILNQQ 629
Cdd:COG4372   220 ARRAAAAQQTAQAIQQRDAQISQKAQQIAARA--EQIRERERQLQRLETAQARLEQEVAQleayYQAYVRLRQQA 292
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
672-1025 6.16e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.39  E-value: 6.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   672 AQRKENESSSLIKDLTCMVKEQKTK------LSEVCKLKQEAAANLQNQINTLEILIED----DKQKSIQIELLKHEKTQ 741
Cdd:TIGR04523   28 ANKQDTEEKQLEKKLKTIKNELKNKekelknLDKNLNKDEEKINNSNNKIKILEQQIKDlndkLKKNKDKINKLNSDLSK 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   742 LISELAAKESLIYGLRTERKVWGQELACQSSTLSQSRG---KLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNE 818
Cdd:TIGR04523  108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTeikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   819 TIRKLKD----------SLQEKDGQIKLLQEQIALIEKCS----------QEQLNEKSSQLDSIVEKLERHNERKEKLKQ 878
Cdd:TIGR04523  188 NIDKIKNkllklelllsNLKKKIQKNKSLESQISELKKQNnqlkdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   879 QLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQ-----VKEVKEKFEDKERKLKAERDK---------SLELQKDAM 944
Cdd:TIGR04523  268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQisqnnkiisQLNEQISQL 347
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   945 EKLQNMDDAFRRQVDEIVEAHQAEIMQLANEKQKYIDcANLKVQQVEDEMRGLLDETCKNKKMMEEKIKQLACAISEIQK 1024
Cdd:TIGR04523  348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ-EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426

                   .
gi 254675308  1025 E 1025
Cdd:TIGR04523  427 E 427
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
790-892 6.54e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 40.46  E-value: 6.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  790 RENESLRKSHESDCDaLRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQI-ALIEKCSQ--------EQLNEKSSQLD 860
Cdd:COG2433   402 RPREKEGTEEEERRE-ITVYEKRIKKLEETVERLEEENSELKRELEELKREIeKLESELERfrrevrdkVRKDREIRARD 480
                          90       100       110
                  ....*....|....*....|....*....|..
gi 254675308  861 SIVEKLERHNERKEKLKQQLKAKELELEEIRK 892
Cdd:COG2433   481 RRIERLEKELEEKKKRVEELERKLAELRKMRK 512
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
43-79 6.61e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 432794 [Multi-domain]  Cd Length: 44  Bit Score: 35.30  E-value: 6.61e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 254675308    43 INLHCNNISKISSIDHIWNLRHLDLSSN-QISQIEGLN 79
Cdd:pfam12799    6 LDLSNNQITDLPPLAKLPNLETLDLSGNnKITDLSDLA 43
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
696-981 8.36e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 39.97  E-value: 8.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  696 KLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTErkVWGQELACQSS--- 772
Cdd:COG5185   334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS--VKSRKLEAQGIfks 411
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  773 ---------TLSQSRGKLEAQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIAL 843
Cdd:COG5185   412 lektlrqydSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN 491
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308  844 IEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNkkwhdkgeLLSHLEMQvkevkekfe 923
Cdd:COG5185   492 LKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN--------LLSKTSIL--------- 554
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 254675308  924 DKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAH---QAEIMQLANEKQKYID 981
Cdd:COG5185   555 DAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKiniQSSLEDLENELGKVIE 615
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
489-1003 9.02e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 39.95  E-value: 9.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   489 RLQNEVKKLTIELMKARDQQEDHIRHLRTLERALEKMEKQKAQQQAAQIRLIQEVELK---------ASAADREINLLRT 559
Cdd:TIGR00618  195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeqlkkqqlLKQLRARIEELRA 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   560 SL----HQEKQQVQQLHELLALKEQEHRQEIETRQFFTDAEFQDALTKRlcKEERKHEQEVKEYQEKID---ILNQQYLD 632
Cdd:TIGR00618  275 QEavleETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR--AKLLMKRAAHVKQQSSIEeqrRLLQTLHS 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   633 LENEFRIALTVEARRfkdvqdgFEDVATELAKSKHALIWAQRKE------NESSSLIKDLTCMVKEQKTKLSE------- 699
Cdd:TIGR00618  353 QEIHIRDAHEVATSI-------REISCQQHTLTQHIHTLQQQKTtltqklQSLCKELDILQREQATIDTRTSAfrdlqgq 425
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   700 ------VCKLKQEAAANLQNQIN---TLEILIEDDKQKSIQIELLKHEKTQLISELAAKESLIYGLRTERKVWGQELAC- 769
Cdd:TIGR00618  426 lahakkQQELQQRYAELCAAAITctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCp 505
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   770 ---------QSSTLSQSRGKLEAQIESLCRENESLRKSHES---DCDALRIKCKIIEDQNETIRklkDSLQEKDGQIKLL 837
Cdd:TIGR00618  506 lcgscihpnPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhQLTSERKQRASLKEQMQEIQ---QSFSILTQCDNRS 582
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   838 QEQIALIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKE 917
Cdd:TIGR00618  583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254675308   918 V--------KEKFEDKERKLKAERDKSLELQKDaMEKLQNMDDAFRRQVDEIVEA--HQAEIMQLANEKQKYIDCANLKV 987
Cdd:TIGR00618  663 HalsirvlpKELLASRQLALQKMQSEKEQLTYW-KEMLAQCQTLLRELETHIEEYdrEFNEIENASSSLGSDLAAREDAL 741
                          570
                   ....*....|....*.
gi 254675308   988 QQVEDEMRGLLDETCK 1003
Cdd:TIGR00618  742 NQSLKELMHQARTVLK 757
RRF pfam01765
Ribosome recycling factor; The ribosome recycling factor (RRF / ribosome release factor) ...
915-969 9.22e-03

Ribosome recycling factor; The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis.


Pssm-ID: 426417 [Multi-domain]  Cd Length: 163  Bit Score: 38.19  E-value: 9.22e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 254675308   915 VKEVKEKFE--------------DKERKLKAERDKSLELQKDAMEKLQNMDDAFRRQVDEIVEAHQAEI 969
Cdd:pfam01765   95 VKQAKKLAEeakvairnirrdanDKLKKLEKDKEISEDELKKAEKEIQKLTDKYIKKIDELLKAKEKEI 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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