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Conserved domains on  [gi|258614027|ref|NP_001158249|]
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ataxin-3 isoform j [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Josephin super family cl20229
Josephin;
5-23 9.89e-05

Josephin;


The actual alignment was detected with superfamily member pfam02099:

Pssm-ID: 426599  Cd Length: 154  Bit Score: 36.43  E-value: 9.89e-05
                          10
                  ....*....|....*....
gi 258614027    5 FHEKQPSGNMDDSGFFSIQ 23
Cdd:pfam02099  51 FLSFGSSHNVDDSGNFSIQ 69
 
Name Accession Description Interval E-value
Josephin pfam02099
Josephin;
5-23 9.89e-05

Josephin;


Pssm-ID: 426599  Cd Length: 154  Bit Score: 36.43  E-value: 9.89e-05
                          10
                  ....*....|....*....
gi 258614027    5 FHEKQPSGNMDDSGFFSIQ 23
Cdd:pfam02099  51 FLSFGSSHNVDDSGNFSIQ 69
 
Name Accession Description Interval E-value
Josephin pfam02099
Josephin;
5-23 9.89e-05

Josephin;


Pssm-ID: 426599  Cd Length: 154  Bit Score: 36.43  E-value: 9.89e-05
                          10
                  ....*....|....*....
gi 258614027    5 FHEKQPSGNMDDSGFFSIQ 23
Cdd:pfam02099  51 FLSFGSSHNVDDSGNFSIQ 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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