|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
163-495 |
9.33e-12 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 68.59 E-value: 9.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELeevahelaetEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR----------ELELALLLAKLKELRKELEELEEELS 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQH 322
Cdd:COG1196 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE--ELENELEELEERLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 323 CKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI-----QCEKAQAKTASELSKSMESMRgHLQAQL 397
Cdd:COG1196 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELeelfeALREELAELEAELAEIRNELE-ELKREI 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 398 RCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLY 477
Cdd:COG1196 407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ-RLEKELSS 485
|
330
....*....|....*...
gi 295054193 478 VAEALSTLESWRSRYNQV 495
Cdd:COG1196 486 LEARLDRLEAEQRASQGV 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
242-628 |
1.60e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 242 KHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLLQKLSTFEETNRTLRDLLREQ 321
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 322 HckEDSERLMEQQGTLLKRLAEADSEKArlllllqdkdkeveELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKE 401
Cdd:TIGR02168 753 S--KELTELEAEIEELEERLEEAEEELA--------------EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 402 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEA 481
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 482 LSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKmredRDSLVERLhrqTAEYSafkLENERLKASFAP 561
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR----IDNLQERL---SEEYS---LTLEEAEALENK 962
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193 562 MEDKLNQAHLEVQQLKASVKNY----EGMIDNYKSQvmKTRLeaDEVAAQLERCDKENKMLK---DEMNKEIEA 628
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEEL--KERY--DFLTAQKEDLTEAKETLEeaiEEIDREARE 1032
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
290-648 |
1.85e-11 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 67.82 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 290 INTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQgTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI 369
Cdd:COG1196 191 LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK-ELRKELEELEEELSRLEEELEELQEELEEAEKEI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 370 QCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKA 449
Cdd:COG1196 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 450 IRAQKERAEKSEEYAEQLHVQLADKDlyvaealSTLESWRSRYNQVVKDKGDLELEIIVLNDRVtdlvnqqqsleekmre 529
Cdd:COG1196 350 EQLLAELEEAKEELEEKLSALLEELE-------ELFEALREELAELEAELAEIRNELEELKREI---------------- 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 530 drDSLVERLHRqtaeysaFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLE 609
Cdd:COG1196 407 --ESLEERLER-------LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477
|
330 340 350
....*....|....*....|....*....|....*....
gi 295054193 610 RCDKENKMLKDEMNkEIEAARRQFQSQLADLQQLPDILK 648
Cdd:COG1196 478 RLEKELSSLEARLD-RLEAEQRASQGVRAVLEALESGLP 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
336-684 |
2.71e-11 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 67.05 E-value: 2.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 336 TLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKaqaKTASELSKSMESMRGHLQAQLRCKEAENSRLcMQIKNLE 415
Cdd:COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR---RQLEELERQLEELKRELAALEEELEQLQSRL-EELEEEL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 416 RSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQV 495
Cdd:COG1196 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 496 VKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQ 575
Cdd:COG1196 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEE----LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 576 LKASVKNYEGMIDNYKsqVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQfQSQLADLQQL-PDILKITEAKL 654
Cdd:COG1196 903 LKEEIEKLRERLEELE--AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE-IEALGPVNLRaIEEYEEVEERY 979
|
330 340 350
....*....|....*....|....*....|
gi 295054193 655 AECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196 980 EELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
401-671 |
1.15e-10 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 65.12 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 401 EAENSRLCMQIKNLERSGNQHKAEVEAI---MEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY 477
Cdd:COG1196 666 KRELKELEEELAELEAQLEKLEEELKSLkneLRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 478 VAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVE---RLHRQTAEYSAFKLENER 554
Cdd:COG1196 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEaerRLDALERELESLEQRRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 555 LKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLercdKENKMLKDEMNKEIEAARRQFQ 634
Cdd:COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL----KELEEEKEELEEELRELESELA 901
|
250 260 270
....*....|....*....|....*....|....*..
gi 295054193 635 SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 671
Cdd:COG1196 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-701 |
1.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQH 322
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 323 CKEDSERLmeqqGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ-AQLRCKE 401
Cdd:TIGR02168 435 LKELQAEL----EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgFSEGVKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 402 AENSRLCM-----QIKNLERSGNQHKAEVEA---------IMEQLKELKQKGDRDKETLK--------KAIRAQKERAEK 459
Cdd:TIGR02168 511 LLKNQSGLsgilgVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGND 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 460 SEEYAEQLHVQLADKDL--YVAEALSTLESWRSRYnqVVKDKGDLELEIIVLNDR----VT---DLVNQQQSLEEKMRED 530
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLvkFDPKLRKALSYLLGGV--LVVDDLDNALELAKKLRPgyriVTldgDLVRPGGVITGGSAKT 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 531 RDSLVERlhrqtaeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLER 610
Cdd:TIGR02168 669 NSSILER-----------RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 611 CDKENKMLKDEM---NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQK 687
Cdd:TIGR02168 738 LEAEVEQLEERIaqlSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
570
....*....|....
gi 295054193 688 GSHELARAGARLPR 701
Cdd:TIGR02168 818 EAANLRERLESLER 831
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
296-592 |
1.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 296 QKELLLQKLSTFEETNRTLRDLLREQhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQcekaq 375
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEA--EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS----- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 376 aktaselskSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE 455
Cdd:TIGR02168 299 ---------RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 456 RAEKSEEYAEQLHvQLADKdlyVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLE-EKMREDRDSL 534
Cdd:TIGR02168 370 LESRLEELEEQLE-TLRSK---VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEEL 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193 535 VERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKS 592
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-666 |
3.14e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAE 480
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 481 ALSTLESWRSRYNQVVKDKGDLELeiivlndrvtDLVNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFA 560
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEE----------DLHKLEEALNDLEARLSHSRIPEI---QAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 561 PMEDKLNQAHLEVQQLKASVKNYEGM--------------IDNYKSQVMKTRLEADEVAAQLERCDKENKMLK---DEMN 623
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQridlkeqiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELE 895
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 295054193 624 KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 666
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
223-683 |
6.13e-10 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 62.47 E-value: 6.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 223 LRHNIERIKEEKDFTMLQKKHLQQEKEclmsklVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLLQ 302
Cdd:COG0419 194 LSELLEDIEDLLEALEEELKELKKLEE------IQEEQEEEELEQEIEALEERLAELEEEKE-------RLEELKARLLE 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 303 KLSTFEETNRTLRDLLREqhckedSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASEL 382
Cdd:COG0419 261 IESLELEALKIREEELRE------LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 383 SKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEA-------IMEQLKELKQKGDRDKETLKKA---IRA 452
Cdd:COG0419 335 EEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKalerlkqLEEAIQELKEELAELSAALEEIqeeLEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 453 QKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSR-----------------YNQVVKDKGDLELEI----IVLND 511
Cdd:COG0419 415 LEKELEELERELEELEEEIKKLEEQINQLESKELMIAELagagekcpvcgqelpeeHEKELLELYELELEEleeeLSREK 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 512 RVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQahLEVQQLKASVKNYEGMIDNYK 591
Cdd:COG0419 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK--LQLQQLKEELRQLEDRLQELK 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 592 SQvMKTRLEADEVAAQLERcdkenkmlKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK---------LAECQDQLQ 662
Cdd:COG0419 573 EL-LEELRLLRTRKEELEE--------LRERLKELKKKLKELEERLSQLEELLQSLELSEAEneleeaeeeLESELEKLN 643
|
490 500
....*....|....*....|.
gi 295054193 663 GYERKNIDLTAIISDLRSRVR 683
Cdd:COG0419 644 LQAELEELLQAALEELEEKVE 664
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
187-565 |
1.35e-09 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 61.65 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 187 MQKGERQmaKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEkdftmlqKKHLQQEKECLMSKLVEAEMDGAAAA 266
Cdd:COG1196 652 ITGGSRN--KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNE-------LRSLEDLLEELRRQLEELERQLEELK 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 267 KQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLreqhckedsERLMEQQGTLLKRLAEADS 346
Cdd:COG1196 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL---------AKLKEEIEELEEKRQALQE 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 347 EKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVE 426
Cdd:COG1196 794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 427 AIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEI 506
Cdd:COG1196 874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 295054193 507 IVLNDRVTDLVNqqqsleEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDK 565
Cdd:COG1196 954 LEEEIEALGPVN------LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-699 |
1.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 358 KDKEVEELLQEI--------QCEKAQAKTASELSkSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIM 429
Cdd:TIGR02168 675 RRREIEELEEKIeeleekiaELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 430 EQLKELKQKgdrdketlkkaIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVL 509
Cdd:TIGR02168 754 KELTELEAE-----------IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 510 NDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDN 589
Cdd:TIGR02168 823 RERLESLERRIAATERRLED----LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 590 YKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKeIEAARRQFQSQLADLQQ--LPDILK---ITEAKLAECQDQLQGY 664
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSltLEEAEAlenKIEDDEEEARRRLKRL 977
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 295054193 665 ERK-----NIDLTAI--ISDLRSRVRDWQKGSHELARAGARL 699
Cdd:TIGR02168 978 ENKikelgPVNLAAIeeYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
328-684 |
5.17e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 5.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 328 ERLMEQQGTLLKRLAEADS--EKARLLLLLQDKDKEVEELLQEIQCEKAQAKtASELSKSMESMRghlqAQLRCKEAENS 405
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLiiDEKRQQLERLRREREKAERYQALLKEKREYE-GYELLKEKEALE----RQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 406 RLCMQIKNLERSGNQHKAEVEAIMEQLKEL----KQKGDRDKETLKKAIR---AQKERAEKS----EEYAEQLHVQLADK 474
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELnkkiKDLGEEEQLRVKEKIGeleAEIASLERSiaekERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 475 DLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlhrqTAEYSAFKLENER 554
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY----REKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 555 LKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIdnyksqvmkTRLEADevaaqlercdkenkmlKDEMNKEIEAARRQFQ 634
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKI---------NELEEE----------------KEDKALEIKKQEWKLE 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 295054193 635 SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
357-684 |
6.10e-09 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 59.34 E-value: 6.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 357 DKDKEVEELLQEIQ--CEKAQAKTaSELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKE 434
Cdd:COG1196 172 ERKEEAERKLERTEenLERLEDLL-EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 435 LKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLYVAEALSTLESwrsrynqvvkDKGDLELEIIVLNDRVT 514
Cdd:COG1196 251 LEEELEELQEELEEAEKEIEELKSELEELREELE-ELQEELLELKEEIEELEG----------EISLLRERLEELENELE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 515 DLVNQQQSLEEKMrEDRDSLVERLHRQTAEYSAfklENERLKASFAPMEDKLNQAHLEVQQLKASVKNYegmIDNYKSQV 594
Cdd:COG1196 320 ELEERLEELKEKI-EALKEELEERETLLEELEQ---LLAELEEAKEELEEKLSALLEELEELFEALREE---LAELEAEL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 595 MKTRLEADEVAAQLERCDKENKMLKDEM---NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 671
Cdd:COG1196 393 AEIRNELEELKREIESLEERLERLSERLedlKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472
|
330
....*....|...
gi 295054193 672 TAIISDLRSRVRD 684
Cdd:COG1196 473 QEELQRLEKELSS 485
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
163-473 |
8.02e-08 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 55.88 E-value: 8.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEkdftmlqKK 242
Cdd:COG1196 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE-------IS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 243 HLQQEKECLMSKLVEAEmdgaaaaKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLRE-- 320
Cdd:COG1196 306 LLRERLEELENELEELE-------ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEElf 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 321 QHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELsksmesmRGHLQAQLRCK 400
Cdd:COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE-------LEELNEELEEL 451
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193 401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdKETLKKAIRAQKERAEKSEEYAEQLHVQLAD 473
Cdd:COG1196 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR-LEAEQRASQGVRAVLEALESGLPGVYGPVAE 523
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
226-587 |
1.43e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 55.11 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 226 NIERIKEEKDFTMLQKKHLQQEKEclmsklveaemdgaaAAKQVMALKDTIGKLktEKQMTCTDINTLTRQKELLLQKLS 305
Cdd:COG1196 187 NLERLEDLLEELEKQLEKLERQAE---------------KAERYQELKAELREL--ELALLLAKLKELRKELEELEEELS 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 306 tfeETNRTLRDLLREQHCKEdserlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKS 385
Cdd:COG1196 250 ---RLEEELEELQEELEEAE------KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 386 MESMRGHLQAQLRCKEAENSRLCMQIKNLErsgnqhkAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAE 465
Cdd:COG1196 321 LEERLEELKEKIEALKEELEERETLLEELE-------QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 466 QLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDslverlhrqtaEY 545
Cdd:COG1196 394 EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD-----------RL 462
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 295054193 546 SAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMI 587
Cdd:COG1196 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVR 504
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
240-663 |
3.60e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 240 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLqklSTFEETNRTLRDLLR 319
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV---TEFEATTCSLEELLR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 320 -EQHCKEDSErlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEEL---LQEIQCEKAQAKTASELSKSMESMRGHLQA 395
Cdd:pfam05483 367 tEQQRLEKNE---DQLKIITMELQKKSSELEEMTKFKNNKEVELEELkkiLAEDEKLLDEKKQFEKIAEELKGKEQELIF 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 396 QLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQL---------------------KELKQKGDRDKETLKKA----- 449
Cdd:pfam05483 444 LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELekeklknieltahcdklllenKELTQEASDMTLELKKHqedii 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 450 -IRAQKERAEKSEEYAEQLHVQLADKDLYVAEAL-STLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM 527
Cdd:pfam05483 524 nCKKQEERMLKQIENLEEKEMNLRDELESVREEFiQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 528 rEDRDSLVERLHRqtaEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKasvKNYEGMIDNYKSQVMKTRLEADEVAAQ 607
Cdd:pfam05483 604 -ENKNKNIEELHQ---ENKALKKKGSAENKQLNAYEIKVNKLELELASAK---QKFEEIIDNYQKEIEDKKISEEKLLEE 676
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193 608 LERCdkenKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQG 663
Cdd:pfam05483 677 VEKA----KAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
163-537 |
4.05e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 53.56 E-value: 4.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 243 HLQQEKEclmsklvEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdintltRQKELLLQKLSTFEETNRTLRDLLRE-Q 321
Cdd:COG1196 755 ELQERLE-------ELEEELESLEEALAKLKEEIEELEEKRQ----------ALQEELEELEEELEEAERRLDALERElE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 322 HCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKE 401
Cdd:COG1196 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 402 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK-GDRDKETLKKAIRAQKERAEKseeyaeqlhvQLADKDLYVAE 480
Cdd:COG1196 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEElEEEYEDTLETELEREIERLEE----------EIEALGPVNLR 967
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 295054193 481 ALSTLESWRSRYNQVVKDKGDLELEIivlndrvTDLVNQQQSLEEKMREDRDSLVER 537
Cdd:COG1196 968 AIEEYEEVEERYEELKSQREDLEEAK-------EKLLEVIEELDKEKRERFKETFDK 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
416-684 |
5.51e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 53.18 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 416 RSGNQHKAEVEAIMEQLKELKQ---KGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRY 492
Cdd:COG1196 660 RSSLAQKRELKELEEELAELEAqleKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 493 NQVVKDKGDLELEIIVLNDRVtdlvnqqqsleEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLE 572
Cdd:COG1196 740 EELEEELEELEEELEELQERL-----------EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 573 VQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLercdkenkmlkDEMNKEI-------EAARRQFQSQLADLQQLPD 645
Cdd:COG1196 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKL-----------DELEEELeelekelEELKEELEELEAEKEELED 877
|
250 260 270
....*....|....*....|....*....|....*....
gi 295054193 646 ILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
212-683 |
5.75e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 53.18 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 212 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDIN 291
Cdd:COG1196 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 292 TLTRQKELLLQKLSTFEETNRTLRDLLRE----QHCKEDSERLME-QQGTLLKRLA------------------------ 342
Cdd:COG1196 471 ELQEELQRLEKELSSLEARLDRLEAEQRAsqgvRAVLEALESGLPgVYGPVAELIKvkekyetaleaalgnrlqavvven 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 343 EADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA---------------SELSKSMESMRGHL-------QAQLRCK 400
Cdd:COG1196 551 EEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAapgflglasdlidfdPKYEPAVRFVLGDTlvvddleQARRLAR 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 401 EAENSRLCMQIKN--LERSGNQH------------KAEVEAIMEQLKELKQ---KGDRDKETLKKAIRAQKERAEKSEEY 463
Cdd:COG1196 631 KLRIKYRIVTLDGdlVEPSGSITggsrnkrsslaqKRELKELEEELAELEAqleKLEEELKSLKNELRSLEDLLEELRRQ 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 464 AEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVtdlvnqqqsleEKMREDRDSLVERLHRQTA 543
Cdd:COG1196 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL-----------EELEEELESLEEALAKLKE 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 544 EYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCD---KENKMLKD 620
Cdd:COG1196 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEeelEELEKELE 859
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193 621 EMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVR 683
Cdd:COG1196 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
211-687 |
2.25e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 211 HELAETEHENTVLRHNIERIKE-EKDFTML--QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKT---EKQ 284
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSlESQISELkkQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKqlsEKQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 285 MTCTDINTLTRQKELLLQKLST---------FEETNRTLRDLLREQHCK-EDSERLMEQQGTLLKRLAEA----DSEKAR 350
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSeisdlnnqkEQDWNKELKSELKNQEKKlEEIQNQISQNNKIISQLNEQisqlKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 351 LLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLErsgnQHKAEVEAIME 430
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ----QEKELLEKEIE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 431 QLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLE-------SWRSRYNQVVKDKGDLE 503
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqkelkSKEKELKKLNEEKKELE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 504 LEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlhRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 583
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDL--EDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 584 EGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEmNKEIEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQG 663
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE-NEKLSSIIKNIKSKKNKLKQE---VKQIKETIKEIRNKWPE 663
|
490 500
....*....|....*....|....
gi 295054193 664 YERKNIDLTAIISDLRSRVRDWQK 687
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLK 687
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
338-632 |
3.82e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 338 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLC 408
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 409 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ETLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 485
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 486 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQqqsLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASFAPMEDk 565
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAE- 1629
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 295054193 566 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQ 632
Cdd:PTZ00121 1630 ------EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
175-671 |
9.52e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 48.94 E-value: 9.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 175 MNAVGCLKSEVKMQKGERQMAKRFLEERkeeleevaheLAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSK 254
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDK----------IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 255 LVEAEMDGAAAAKQVMALKD-------TIGKLKTEkqmtCTDINTLTRQKELLLQKLSTfeetnrtlrdllreqHCKEDS 327
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRE----LDDRNMEVQRLEALLKAMKS---------------ECQGQM 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 328 ERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSmesmrghLQAQLRCKEAEN--- 404
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS-------LQEKERAIEATNaei 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 405 ----SRLCMQIKNLERSGNQ--HKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYV 478
Cdd:pfam15921 520 tklrSRVDLKLQELQHLKNEgdHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEI 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 479 AEALSTLESWRsrynqVVKDKGDleLEIIVLNDRVTDLVNQQQSL----EEKMREDRDSLVER-------------LHRQ 541
Cdd:pfam15921 600 NDRRLELQEFK-----ILKDKKD--AKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERdqllnevktsrneLNSL 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 542 TAEYSA----FKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-------MIDNYKSQVMKTRLEADEVAAQLE- 609
Cdd:pfam15921 673 SEDYEVlkrnFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkVAMGMQKQITAKRGQIDALQSKIQf 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 610 ------RCDKENKMLKDEMNK-----------------EIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 666
Cdd:pfam15921 753 leeamtNANKEKHFLKEEKNKlsqelstvateknkmagELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
....*
gi 295054193 667 KNIDL 671
Cdd:pfam15921 833 ESVRL 837
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ... |
413-694 |
2.02e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 225638 [Multi-domain] Cd Length: 1480 Bit Score: 47.96 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 413 NLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE---RAEKSEEYAEQLHVQLADkdlyVAEALSTLESWR 489
Cdd:COG3096 338 NLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEEneaRAEAAELEVDELKSQLAD----YQQALDVQQTRA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 490 SRYNQVVK--DKGDLELEIIVLN-DRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPM---- 562
Cdd:COG3096 414 IQYQQAIAalERAKELCHLPDLTaDSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELarse 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 563 ---------EDKLNQAHL--EVQQLKASVKNYEgmidnyksQVMKTRLEADEVAAQLerCDKENKMLKDEmnkEIEAARR 631
Cdd:COG3096 494 awdvarellREGPDQRHLaeQVQPLRMRLSELE--------QRLRQQQSAERLLADF--CKRQGKNLDAE---ELEALHQ 560
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193 632 QFQSQLADLqqlpdilkitEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELAR 694
Cdd:COG3096 561 ELEALIESL----------SDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQ 613
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
289-489 |
3.93e-05 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 46.56 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 289 DINTLTRQKELLLQKLSTFEETNRTLRDLLRE--QHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELL 366
Cdd:COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSelQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 367 QEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHK------AEVEAIMEQLKELKQKGD 440
Cdd:COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQarteelARRAAAAQQTAQAIQQRD 237
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 295054193 441 RDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWR 489
Cdd:COG4372 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV 286
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
430-661 |
6.00e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 430 EQLK-ELKQ----KGDRDKET---LKKAIRA---QKERAEKSEEY----------AEQLHVQLADKDLYVAEALSTLESw 488
Cdd:PRK10929 26 KQITqELEQakaaKTPAQAEIveaLQSALNWleeRKGSLERAKQYqqvidnfpklSAELRQQLNNERDEPRSVPPNMST- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 489 rsrynqvvkdkGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAeysAFKLENE---RLKASFAPmEDK 565
Cdd:PRK10929 105 -----------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTE---ARRQLNEierRLQTLGTP-NTP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 566 LNQAHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKMLKDEMNkeieaARRQFQSQLA 638
Cdd:PRK10929 170 LAQAQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA 242
|
250 260
....*....|....*....|...
gi 295054193 639 dlqqlpdiLKITEaKLAECQDQL 661
Cdd:PRK10929 243 --------LESTE-LLAEQSGDL 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
165-692 |
7.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 165 NRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHL 244
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 245 QQEKECLMSKLVEAEMDgaaaakqvmALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCK 324
Cdd:TIGR02168 420 QQEIEELLKKLEEAELK---------ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 325 EDS-ERLMEQQGTL---LKRLAEADSEKARLLLLLQDK---DKEVE--------ELLQEIQCEKAQ-AKTASELSKSMES 388
Cdd:TIGR02168 491 LDSlERLQENLEGFsegVKALLKNQSGLSGILGVLSELisvDEGYEaaieaalgGRLQAVVVENLNaAKKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 389 MR-----------GHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAI-------------MEQLKELKQ------- 437
Cdd:TIGR02168 571 GRvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPgyrivtl 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 438 ------------KGDRDKETL----KKAIRAQKERAEKSEEYAEQLHVQLAdkdlyvaEALSTLESWRSRYNQVVKDKGD 501
Cdd:TIGR02168 651 dgdlvrpggvitGGSAKTNSSilerRREIEELEEKIEELEEKIAELEKALA-------ELRKELEELEEELEQLRKELEE 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 502 LELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASfapmEDKLNQAHLEVQQLKASVK 581
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----EAEIEELEAQIEQLKEELK 799
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 582 NYEGMIDNYKSQVMKTRLEADEVA-------AQLERCDKENKML---KDEMNKEIEAARRQFQSQLADLQQLPDILKITE 651
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRerlesleRRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 295054193 652 AKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHEL 692
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-529 |
1.23e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 212 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTctDIN 291
Cdd:TIGR02169 717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 292 TLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIqc 371
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE--KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-- 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 372 EKAQAKTaselsKSMESMRGHLqaqlrckEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIR 451
Cdd:TIGR02169 871 EELEAAL-----RDLESRLGDL-------KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 452 AQKERAEKSEEYAEQLHVQLadKDLYVAEALSTLESWRSR----YNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM 527
Cdd:TIGR02169 939 PKGEDEEIPEEELSLEDVQA--ELQRVEEEIRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
..
gi 295054193 528 RE 529
Cdd:TIGR02169 1017 RE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
209-610 |
1.23e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 209 VAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCT 288
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 289 DINTLTRQKELLL-------QKLSTFEETNRTLRDLLREqhckedSERLMEQQ-----GTLLKrlaeaDSEKARLLLLLQ 356
Cdd:PRK02224 406 DLGNAEDFLEELReerdelrEREAELEATLRTARERVEE------AEALLEAGkcpecGQPVE-----GSPHVETIEEDR 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 357 DKDKEVEELLQEIQCEKAqaktasELSKSMESMRghlqaQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 436
Cdd:PRK02224 475 ERVEELEAELEDLEEEVE------EVEERLERAE-----DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 437 QkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVkdkgDLELEIIVLNDRVTDL 516
Cdd:PRK02224 544 E----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELN----SKLAELKERIESLERIR----TLLAAIADAEDEIERL 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 517 VNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKASFAPMEDKLNQAHLEVQQL---KASVKNYEGMIDNYKS 592
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELreeRDDLQAEIGAVENELE 691
|
410
....*....|....*...
gi 295054193 593 QVMKTRLEADEVAAQLER 610
Cdd:PRK02224 692 ELEELRERREALENRVEA 709
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
263-692 |
1.39e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 263 AAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhckEDSERLMEQQGTLLKRLA 342
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE---IHIRDAHEVATSIREISC 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 343 EADSEKARLLLLLQDK--DKEVEELL-QEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQ---IKNLER 416
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKttLTQKLQSLcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaITCTAQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 417 SGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQ--------LHVQLADKDLYVAEALStlesw 488
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcplcgscIHPNPARQDIDNPGPLT----- 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 489 rSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDS---LVERLHRQTAEYSAFKLENERLKaSFAPMEDK 565
Cdd:TIGR00618 528 -RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfsiLTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 566 LNQAHLEVQQLKASVKNYEgmIDNYKSQVMKTRLEADEvaaQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPD 645
Cdd:TIGR00618 606 AEDMLACEQHALLRKLQPE--QDLQDVRLHLQQCSQEL---ALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQL 680
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 295054193 646 ILKITEAKLAECQDQLQGYERKNIDLTAI---ISDLRSRVRDWQKGSHEL 692
Cdd:TIGR00618 681 ALQKMQSEKEQLTYWKEMLAQCQTLLRELethIEEYDREFNEIENASSSL 730
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
219-671 |
1.45e-04 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 45.21 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 219 ENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAE---MDGAAAAKQVMALKDTIgkLKTEKQMTcTDINTLTR 295
Cdd:PTZ00440 729 KYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDkdlPDGKNTYEEFLQYKDTI--LNKENKIS-NDINILKE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 296 QKELLLQKLSTFEETNRTLRDLLREQHckEDSERLMEQQGTLLKRLAEADSEKarlllLLQDKDKEVEELLQEIQCEKAQ 375
Cdd:PTZ00440 806 NKKNNQDLLNSYNILIQKLEAHTEKND--EELKQLLQKFPTEDENLNLKELEK-----EFNENNQIVDNIIKDIENMNKN 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 376 AKTASELSKSMESMRGHLQAqlrckeaensrlcmqIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE 455
Cdd:PTZ00440 879 INIIKTLNIAINRSNSNKQL---------------VEHLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKE 943
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 456 RAEK--SEEYAEQLHVQLADKDLYVAEALSTLESW-RSRYNQVVKDKGD----------LELEIIVLNDRVTDLVNQQQs 522
Cdd:PTZ00440 944 KIEKqlSDTKINNLKMQIEKTLEYYDKSKENINGNdGTHLEKLDKEKDEwehfkseidkLNVNYNILNKKIDDLIKKQH- 1022
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 523 leEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKA---SFAPMEDKLNQAHL----EVQQLKASVKNYEGMIDNYKSQV 594
Cdd:PTZ00440 1023 --DDIIELIDKLIKEKGKEIEEKVDQYISLlEKMKTklsSFHFNIDIKKYKNPkikeEIKLLEEKVEALLKKIDENKNKL 1100
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193 595 MKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDIL-KITEAKLAECQdqlqgYERKNIDL 671
Cdd:PTZ00440 1101 IEIKNKSHEHVVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDiTLNEVNEIEIE-----YERILIDH 1173
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
490-684 |
1.53e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 490 SRYNQVVKDKgdleleIIVLNDRVTDLVNQQQSLEEKMREDRDsLVERLHRQTAEysafklENERLKASFAPMEDKLNQA 569
Cdd:PHA02562 166 SEMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNK-NIEEQRKKNGE------NIARKQNKYDELVEEAKTI 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 570 HLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKD----------------------EMNKEIE 627
Cdd:PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqqisegpdritkikDKLKELQ 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193 628 AARRQFQSQLADLQQLPD-----ILKITE--AKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PHA02562 313 HSLEKLDTAIDELEEIMDefneqSKKLLElkNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
330-588 |
1.58e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 330 LMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-----SELSKSMESMRGHLQAQLRCKEAEN 404
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAvakdrSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 405 SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyvaeALST 484
Cdd:pfam12128 347 EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAED-------DLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 485 LES-WRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM--REDRDSLVER----LHRQTAEYSAFKLENERLKA 557
Cdd:pfam12128 420 LESeLREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLlqLENFDERIERareeQEAANAEVERLQSELRQARK 499
|
250 260 270
....*....|....*....|....*....|.
gi 295054193 558 SFAPMEDKLNQAHLEVQQLKASVKNYEGMID 588
Cdd:pfam12128 500 RRDQASEALRQASRRLEERQSALDELELQLF 530
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
228-682 |
1.61e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 45.09 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 228 ERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTF 307
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLNDSNTQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 308 EETNRTLRdLLREQHCKEDSERLMEQQGTLLKRLAEADSekaRLLLLLQDKDKEVEELLQEIQCEkaqaktASELSKSME 387
Cdd:pfam15921 172 IEQLRKMM-LSHEGVLQEIRSILVDFEEASGKKIYEHDS---MSTIHFRSLGSAISKILRELDTE------ISYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 388 SMRGHLQAqLRCKEAENSRLCMQIKN--LERSGNQHKAEVEAIMEQLKELKQKGDrdketlkkAIRAQKERAEKSEEYAE 465
Cdd:pfam15921 242 PVEDQLEA-LKSESQNKIELLLQQHQdrIEQLISEHEVEITGLTEKASSARSQAN--------SIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 466 QLHV-QLADKDLYVAEALSTLESWRSRYNQVVKDkgdLELEIIVLNDRVTDLVNQQQSLEEK---MREDRDSLVERLHRQ 541
Cdd:pfam15921 313 SMYMrQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 542 TAEYSAFKLENERL-------KASFAPMEDKLNQAHLEVQQLKASVKnyegmidnyksqVMKTRLEAdEVAAQLERCDKE 614
Cdd:pfam15921 390 EKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLK------------AMKSECQG-QMERQMAAIQGK 456
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 615 NKMLK--DEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRV 682
Cdd:pfam15921 457 NESLEkvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-474 |
2.21e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 205 ELEEVAHELAETEHEntvlRHNIERikeekdftmlQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQ 284
Cdd:TIGR02168 240 ELEELQEELKEAEEE----LEELTA----------ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 285 MTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEE 364
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAEL--EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 365 LLQEI-QCEKAQAKTASELSkSMESMRGHLQAQLRCKEAENSRLCMQIKNLERsgNQHKAEVEAIMEQLKELkQKGDRDK 443
Cdd:TIGR02168 384 LRSKVaQLELQIASLNNEIE-RLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEEL-QEELERL 459
|
250 260 270
....*....|....*....|....*....|.
gi 295054193 444 ETLKKAIRAQKERAEKSEEYAEQLHVQLADK 474
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQAR 490
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
169-670 |
2.69e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 44.37 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 169 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHEntvLRHNIERIKEEKDFTMLQKKHLQQEK 248
Cdd:COG0419 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKE---LEERLEELEKELEKALERLKQLEEAI 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 249 ECLMSKLVE---AEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREqHCKE 325
Cdd:COG0419 392 QELKEELAElsaALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE-LPEE 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 326 DSERLMEQQGTLLKRLaeadSEKARLLLLLQDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLrcKEAENS 405
Cdd:COG0419 471 HEKELLELYELELEEL----EEELSREKEEAELREEIEELEKELR---ELEEELIELLELEEALKEELEEKL--EKLENL 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 406 RLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDR------DKETLKKAIRAQKERAEKSEEYAEQL-HVQLADKDLYV 478
Cdd:COG0419 542 LEELEELKEKLQLQQLKEELRQLEDRLQELKELLEElrllrtRKEELEELRERLKELKKKLKELEERLsQLEELLQSLEL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 479 AEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEK-MREDRDSLVERLHRQTAE-YSAFKLENERLK 556
Cdd:COG0419 622 SEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEiRRELQRIENEEQLEEKLEeLEQLEEELEQLR 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 557 ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKsQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ 636
Cdd:COG0419 702 EELEELLKKLGEIEQLIEELESRKAELEELKKELE-KLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKL 780
|
490 500 510
....*....|....*....|....*....|....
gi 295054193 637 LADLQQLPDILKITEAKLAECQDQLQGYERKNID 670
Cdd:COG0419 781 SLNRYDLRRLTIRKDGNGGLVVVVYDGGEVRPIK 814
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
169-584 |
3.10e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 44.32 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 169 KKIDSLMNAvgcLKSEVKMQKgERQMAKrfLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKdftmLQKKHLQQEK 248
Cdd:pfam15921 429 QRLEALLKA---MKSECQGQM-ERQMAA--IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKK----MTLESSERTV 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 249 ECLMSKLVEAEMDGAAAAKQVMALKDTIG-KLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNrtLRDLLREQhcKEDS 327
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDlKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK--VIEILRQQ--IENM 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 328 ERLMEQQGtllkRLAEA-DSEKARLLLLLQDKDKEVEELlqEIQCEKAQAKTaselsKSMESMRGHLQAQ-LRCKEAENS 405
Cdd:pfam15921 575 TQLVGQHG----RTAGAmQVEKAQLEKEINDRRLELQEF--KILKDKKDAKI-----RELEARVSDLELEkVKLVNAGSE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 406 RLcMQIKNLERSGNQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRaqkERAEKSEEYAEQLHVQLADKDLYVAEALSTL 485
Cdd:pfam15921 644 RL-RAVKDIKQERDQLLNEVKTSRNELNSLSE----DYEVLKRNFR---NKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 486 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM----------REDRDSLVERL-------HRQTAEYSAF 548
Cdd:pfam15921 716 KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMtnankekhflKEEKNKLSQELstvatekNKMAGELEVL 795
|
410 420 430
....*....|....*....|....*....|....*.
gi 295054193 549 KLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 584
Cdd:pfam15921 796 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQE 831
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
330-637 |
3.74e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 330 LMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ-AQLRCKEAENSRLC 408
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmAMERERELERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 409 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEAlstlESW 488
Cdd:pfam17380 357 ERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ----EEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 489 RSRYNQVVKDKGDLELEIIvlndRVTDLVNQQQsleekmredrdslVERLHRQTAEYSAFKLENERLKASFAPMEDkLNQ 568
Cdd:pfam17380 433 RQREVRRLEEERAREMERV----RLEEQERQQQ-------------VERLRQQEEERKRKKLELEKEKRDRKRAEE-QRR 494
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 569 AHLEvQQLKAsvkNYEGMIDNYKSQVMKTRLEADEVAAQLErcDKENKMLKDEMNKEIE-AARRQFQSQL 637
Cdd:pfam17380 495 KILE-KELEE---RKQAMIEEERKRKLLEKEMEERQKAIYE--EERRREAEEERRKQQEmEERRRIQEQM 558
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
209-571 |
4.59e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 209 VAHELAETEHENTVLRHNIER-----------IKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIG 277
Cdd:pfam05483 430 IAEELKGKEQELIFLLQAREKeihdleiqltaIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAS 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 278 KLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLreqhckEDSERLMEQQGTLLKRLAEADSEKARLLLLLQD 357
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL------ESVREEFIQKGDEVKCKLDKSEENARSIEYEVL 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 358 KdKEVEELLQEIQCEKAQaKTASELSKSMESMRGHLQAQLRCKEAENSrlcmQIKNLERSGNQHKAEVEAIMEQLKELK- 436
Cdd:pfam05483 584 K-KEKQMKILENKCNNLK-KQIENKNKNIEELHQENKALKKKGSAENK----QLNAYEIKVNKLELELASAKQKFEEIId 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 437 --QKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY-VAEALSTLESWRSRYNQVVKDKgdlELEIIVLNDRV 513
Cdd:pfam05483 658 nyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHkIAEMVALMEKHKHQYDKIIEER---DSELGLYKNKE 734
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193 514 TDLVNQQQSLEEKMREDRDSLVERLHRQTAEysafKLENERLKasfapMEDKLNQAHL 571
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLEIE----KEEKEKLK-----MEAKENTAIL 783
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
210-678 |
5.84e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 43.21 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 210 AHELAETEHE------------------NTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMA 271
Cdd:COG0419 241 LAELEEEKERleelkarlleiesleleaLKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 272 LKDT------IGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCK--EDSERLMEQQGTLLKRLAE 343
Cdd:COG0419 321 LEKLksleerLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKalERLKQLEEAIQELKEELAE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 344 ADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQA----QLRC-------------------- 399
Cdd:COG0419 401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAElagaGEKCpvcgqelpeehekellelye 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY-- 477
Cdd:COG0419 481 LELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKee 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 478 ---VAEALSTLESWRSRYNQVVKDKGDLElEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENER 554
Cdd:COG0419 561 lrqLEDRLQELKELLEELRLLRTRKEELE-ELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 555 lkasfapmeDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKtRLEADEVAAQLERCDKENKMLKDEM---NKEIEAARR 631
Cdd:COG0419 640 ---------EKLNLQAELEELLQAALEELEEKVEELEAEIRR-ELQRIENEEQLEEKLEELEQLEEELeqlREELEELLK 709
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 295054193 632 QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDL 678
Cdd:COG0419 710 KLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAG 756
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
237-484 |
6.54e-04 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 42.70 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 237 TMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRD 316
Cdd:COG4372 72 GVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 317 llREQHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESmrghLQAQ 396
Cdd:COG4372 152 --RLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELAR----RAAA 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 397 LRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIR-AQKERAEKSEEYAEQLHVQLADKD 475
Cdd:COG4372 226 AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAyYQAYVRLRQQAAATQRGQVLAGAA 305
|
....*....
gi 295054193 476 LYVAEALST 484
Cdd:COG4372 306 QRVAQAQAQ 314
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
163-462 |
6.88e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 6.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERqmAKRFLEERKEELEEVAHEL--AETEHENTVLRHNIERIKEEKDFTMLQ 240
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 241 KKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDintlTRQKELLLQKLSTFEETNRTLRDLLRE 320
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE----AKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 321 QHCKEDSERLMEQQGTL----LKRLAEADSEKARLLLLLQDKDKEVEELLQEiqcEKAQAKTASELSKSMESMRGHLQaQ 396
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK---EAEEAKKAEELKKKEAEEKKKAE-E 1720
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193 397 LRCKEAENSrlcMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEE 462
Cdd:PTZ00121 1721 LKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
224-519 |
7.64e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 224 RHNIERIKEEKDfTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKT----EKQMTCTDINTLTRQKEL 299
Cdd:COG5022 768 LKRIKKIQVIQH-GFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKtikrEKKLRETEEVEFSLKAEV 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 300 LLQKLSTFEETNRTLRDLLREQhCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQC---EKAQA 376
Cdd:COG5022 847 LIQKFGRSLKAKKRFSLLKKET-IYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSdliENLEF 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 377 KTA--SELSKSMESMRGHLQAQL-RCKEAENSRLCMQIKNLERSGNQHKAEV---EAIMEQLKELKQKGDRDKETLKKaI 450
Cdd:COG5022 926 KTEliARLKKLLNNIDLEEGPSIeYVKLPELNKLHEVESKLKETSEEYEDLLkksTILVREGNKANSELKNFKKELAE-L 1004
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295054193 451 RAQKERAEKSEEYAEQLHVQLADKDlYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQ 519
Cdd:COG5022 1005 SKQYGALQESTKQLKELPVEVAELQ-SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLR 1072
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
228-470 |
1.22e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 228 ERIKEEKdFTMLQKKHLQQEKECLMS------KLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEL-- 299
Cdd:pfam17380 286 ERQQQEK-FEKMEQERLRQEKEEKAReverrrKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELer 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 300 -LLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKT 378
Cdd:pfam17380 365 iRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 379 ASELS--KSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQ-LKELKQKG----------DRDKET 445
Cdd:pfam17380 445 AREMErvRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeLEERKQAMieeerkrkllEKEMEE 524
|
250 260
....*....|....*....|....*
gi 295054193 446 LKKAIRAQKERAEKSEEYAEQLHVQ 470
Cdd:pfam17380 525 RQKAIYEEERRREAEEERRKQQEME 549
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
509-662 |
1.23e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 509 LNDRVTDLvNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGmid 588
Cdd:PRK09039 58 LNSQIAEL-ADLLSLERQGNQDLQDSVANL---RASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ--- 130
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193 589 nyksqvmktrlEADEVAAQLERcdkenkmlkdeMNKEIEAARRqfqsQLADLQQLpdiLKITEAKLAECQDQLQ 662
Cdd:PRK09039 131 -----------VSARALAQVEL-----------LNQQIAALRR----QLAALEAA---LDASEKRDRESQAKIA 175
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
412-684 |
2.02e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 412 KNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEqlhvqladkdlyVAEALSTLESwrsr 491
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET------------LEAEIEDLRE---- 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 492 ynqvvkDKGDLELEIIVLNDRVTDlvnQQQSLEEkMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHL 571
Cdd:PRK02224 266 ------TIAETEREREELAEEVRD---LRERLEE-LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 572 EVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAqlercdkenkmlkdemnkEIEAARRQFQSQLADLQQLPDILKITE 651
Cdd:PRK02224 336 AAQAHNEEAESLREDADDLEERAEELREEAAELES------------------ELEEAREAVEDRREEIEELEEEIEELR 397
|
250 260 270
....*....|....*....|....*....|...
gi 295054193 652 AKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAE 430
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
205-633 |
2.21e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 205 ELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEmDGAAAAKQVMALKDTIGKLKTEKQ 284
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 285 MTCTDINTLTRQKELLLQKLSTFEETNRTLRDL-------------LREQHCK-EDSERLMEQQGTLLKRLAEADSEKAR 350
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELkkklkelekrleeLEERHELyEEAKAKKEELERLKKRLTGLTPEKLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 351 LLLLLQDKDK-EVEELLQEIQCEKAQAKT-ASELSKSMESMRGhlqAQLRCKeaensrLCMQIKNLERSGN---QHKAEV 425
Cdd:PRK03918 391 KELEELEKAKeEIEEEISKITARIGELKKeIKELKKAIEELKK---AKGKCP------VCGRELTEEHRKElleEYTAEL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 426 EAIMEQLKELKQKGDRDKETLKK--AIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALStlESWRsRYNQVVKDKGDLE 503
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELREleKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE--KKAE-EYEKLKEKLIKLK 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 504 LEIIVLND---RVTDLVNQQQSLEEKMREDRDSLVErLHRQTAE--YSAFKLENERLKasfapmedKLNQAHLEVQQLKA 578
Cdd:PRK03918 539 GEIKSLKKeleKLEELKKKLAELEKKLDELEEELAE-LLKELEElgFESVEELEERLK--------ELEPFYNEYLELKD 609
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 295054193 579 SVKNYEGMIDNYKsqvmKTRLEADEVAAQLERCDKENKMLKdemnKEIEAARRQF 633
Cdd:PRK03918 610 AEKELEREEKELK----KLEEELDKAFEELAETEKRLEELR----KELEELEKKY 656
|
|
| NtpI |
COG1269 |
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion]; |
400-656 |
2.25e-03 |
|
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
Pssm-ID: 224188 [Multi-domain] Cd Length: 660 Bit Score: 41.19 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdKETLK---KAIRAQKERAEKSEEYAEQLHVQLADKdl 476
Cdd:COG1269 45 ELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEE-VEKLEaelKSLEEVIKPAEKFSSEVEELTRKLEER-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 477 yVAEALSTLESWRSRYNQVVKDKgDLELEIIVLNDRVTDLVNQQQSLEEKmredRDSLVERLHRQTAEYSAFKLENERLk 556
Cdd:COG1269 122 -LSELDEELEDLEDLLEELEPLA-YLDFDLSLLRGLKFLLVRLGLVRREK----LEALVGVIEDEVALYGENVEASVVI- 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 557 aSFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ 636
Cdd:COG1269 195 -VVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIE 273
|
250 260
....*....|....*....|
gi 295054193 637 LADLQQLPDILKITEAKLAE 656
Cdd:COG1269 274 KALGDVLSKLARTEYTLAIE 293
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
358-512 |
2.46e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 358 KDKEVEELLQEIQcEKAQAKTASELSK-SMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 436
Cdd:PRK09039 51 KDSALDRLNSQIA-ELADLLSLERQGNqDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 437 QKGDRDK---ETLKK---AIRAQKERAEK----SEEYAEQLHVQLAD--KDLYVAEA--LSTLESWRS----RYNQVVKD 498
Cdd:PRK09039 130 QVSARALaqvELLNQqiaALRRQLAALEAaldaSEKRDRESQAKIADlgRRLNVALAqrVQELNRYRSeffgRLREILGD 209
|
170
....*....|....
gi 295054193 499 KGDleleIIVLNDR 512
Cdd:PRK09039 210 REG----IRIVGDR 219
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-626 |
3.63e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 346 SEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEV 425
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 426 EAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEyAEQLHVQlADKDLYVAEALSTLESWRSRYNQVVKDKGDLELE 505
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK-AEEAKKE-AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 506 IIVLNDRVTDLVNQQQSLEEKMREDR---------DSLVERLHRQTAEYSAFK-LENERLKASFAPMEDKLNQAHlEVQQ 575
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRMEVDKkikdifdnfANIIEGGKEGNLVINDSKeMEDSAIKEVADSKNMQLEEAD-AFEK 1851
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 295054193 576 LKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEI 626
Cdd:PTZ00121 1852 HKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
163-536 |
4.09e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 243 HLQQEK-ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEllLQKLSTFEETN-----RTLRD 316
Cdd:PTZ00121 1479 AEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK--ADEAKKAEEKKkadelKKAEE 1556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 317 LLREQHCK--EDSERLMEQQGTLLKRLAEA-DSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGhl 393
Cdd:PTZ00121 1557 LKKAEEKKkaEEAKKAEEDKNMALRKAEEAkKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK-- 1634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 394 QAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLK---ELKQKGDRDKETLKKAIRAQKERAEKSEEY------- 463
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKkkaEEAKKAEEDEKKAAEALKKEAEEAKKAEELkkkeaee 1714
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193 464 ---AEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDleleiivlNDRVTDLVNQQQSLEEKMREDRDSLVE 536
Cdd:PTZ00121 1715 kkkAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE--------KKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
139-687 |
4.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 139 SSEKLV-SVMRLSDLSTEDDDSGHCK--MNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAE 215
Cdd:PRK03918 146 SREKVVrQILGLDDYENAYKNLGEVIkeIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 216 TEHENTVLRHNIERIKEEKdftmLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTekqmtctdintlTR 295
Cdd:PRK03918 226 LEKEVKELEELKEEIEELE----KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE------------LK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 296 QKELLLQKLSTF-EETNRTLRDLlreqhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLqdkdKEVEELLQEIQCEKA 374
Cdd:PRK03918 290 EKAEEYIKLSEFyEEYLDELREI------EKRLSRLEEEINGIEERIKELEEKEERLEELK----KKLKELEKRLEELEE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 375 QAKTASELSKSMESMRGhLQAQLRCKEAEnsRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRAQK 454
Cdd:PRK03918 360 RHELYEEAKAKKEELER-LKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKE----LKKAIEELK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 455 E--------RAEKSEEYAEQLhvqLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLND--RVTDLVNQQQSLE 524
Cdd:PRK03918 433 KakgkcpvcGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 525 EKMREDRdslVERLHRQTAEYSAFKLENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMIDNYKSqvmktrlEADEV 604
Cdd:PRK03918 510 EKLKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEE-------ELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 605 AAQLERCDKENKMLKDEMNKEIEAARRQFQSqladLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PRK03918 576 LKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
...
gi 295054193 685 WQK 687
Cdd:PRK03918 652 LEK 654
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
169-631 |
4.80e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 169 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEK 248
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 249 -ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR-EQHCKED 326
Cdd:PTZ00121 1446 aDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaEEAKKAD 1525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 327 SERLMEQQgtllkrlAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSR 406
Cdd:PTZ00121 1526 EAKKAEEA-------KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 407 LCMQIKNLERSGNQHKAEVEAI-MEQLKELKQKgDRDKETLKKAIRAQKERAE---KSEEYAEQLHVQLADK---DLYVA 479
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEE-KKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEAKKaeeDKKKA 1677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 480 EALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLeEKMREDRDSLVERLHRqtaeysafKLENERLKASF 559
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL-KKAEEENKIKAEEAKK--------EAEEDKKKAEE 1748
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295054193 560 APMEDKLNQahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLErCDKENKMLKDEMNKEIEAARR 631
Cdd:PTZ00121 1749 AKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME-VDKKIKDIFDNFANIIEGGKE 1816
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
223-444 |
6.99e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 223 LRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQ 302
Cdd:PHA02562 190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 303 KLSTFEETNRTLRDllrEQHCKEDSERLmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQcekAQAKTASEL 382
Cdd:PHA02562 270 KIEQFQKVIKMYEK---GGVCPTCTQQI-SEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN---EQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193 383 SKSMESMRGHLQAQlrckEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL-KQKGDRDKE 444
Cdd:PHA02562 343 KNKISTNKQSLITL----VDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIvKTKSELVKE 401
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
240-461 |
7.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227278 [Multi-domain] Cd Length: 420 Bit Score: 39.32 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 240 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR 319
Cdd:COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 320 EQhckEDSERLMEQQGTLLKRLAEADSEKArlLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRC 399
Cdd:COG4942 119 EQ---LAALQRSGRNPPPALLVSPEDAQRS--VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSE 461
Cdd:COG4942 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ... |
401-636 |
8.00e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 225638 [Multi-domain] Cd Length: 1480 Bit Score: 39.48 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK--------------GDRDKETLKKAIRAQKERAEKSEEYAEQ 466
Cdd:COG3096 835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGvtalnrlipqlnllADESLADRVEEIRERLDEAQEAARFIQQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 467 LHVQLADKDLYVAEALSTLESW---RSRYNQVVKDKGDLELEIIVLNDRV-----------TDLVNQQQSLEEKMRE--- 529
Cdd:COG3096 915 HGNTLSKLEPIASVLQSDPEQFeqlKEDYAQAQQMQRQARQQAFALTEVVqrrahfsysdsAEMLSENSDLNEKLRQrle 994
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 530 ----DRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLkaSVKNYEGMI-------DNYKSQVMKTR 598
Cdd:COG3096 995 qaeaERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI--GVRADSGAEerarirrDELHAQLSTNR 1072
|
250 260 270
....*....|....*....|....*....|....*...
gi 295054193 599 LEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQ 636
Cdd:COG3096 1073 SRRNQLEKQLTFCEAE----MDNLTRKLRKLERDYFEM 1106
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
360-667 |
8.02e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 360 KEVEELLQEIQCEKAQAKT-ASELSKSMESMRGHLQAQLRCKEAEN--SRLCMQIKNLERSGNQHKAEVEAI--MEQLKE 434
Cdd:TIGR00606 747 PELRNKLQKVNRDIQRLKNdIEEQETLLGTIMPEEESAKVCLTDVTimERFQMELKDVERKIAQQAAKLQGSdlDRTVQQ 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 435 LKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRyNQVVKDKGDLELEIIVLNDRVT 514
Cdd:TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRR-QQFEEQLVELSTEVQSLIREIK 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 515 DLVNQQQSLEEKMREDRDSLVERLHRQtaeysafklENERLKAsfapmEDKLNQAHLEVQQLKASVKNYEGMI-DNYKSQ 593
Cdd:TIGR00606 906 DAKEQDSPLETFLEKDQQEKEELISSK---------ETSNKKA-----QDKVNDIKEKVKNIHGYMKDIENKIqDGKDDY 971
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193 594 VMKTRLEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQLADLQQLPD--ILKITEAKLAECQDQLQGYERK 667
Cdd:TIGR00606 972 LKQKETELNTVNAQLEECEKH----QEKINEDMRLMRQDIDTQKIQERWLQDnlTLRKRENELKEVEEELKQHLKE 1043
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
337-662 |
8.31e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 429718 [Multi-domain] Cd Length: 488 Bit Score: 39.10 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 337 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLER 416
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKVEELEEKYKELSR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 417 SGNQHKAEVEAIMEQ-------LKELKQKG--------------DRDKETLKKAIRAQKEraEKSEEYAEQLHVQLADKD 475
Cdd:pfam07888 109 SGEELAEEKDALLAQraesearIRELEEDIktltqrvleretelERMKERVKKAGAQRKE--EEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 476 LYvaEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDlVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERL 555
Cdd:pfam07888 187 LR--SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTT-AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSM 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 556 KASFAPMEDKLNQAHLEVQQL-----KASVKNYEGM---------------IDNYKSQVMKTRLEADEVAAQLERcdKEN 615
Cdd:pfam07888 264 AAQRDRTQAELHQARLQAAQLtlqlaDASLALREGRarwaqeretlqqsaeADKDRIEKLSAELQRLEERLQEER--MER 341
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 295054193 616 KMLKDEMNKEIEAARRQFQSQLADLQQLPDILKIT----EAKLAECQDQLQ 662
Cdd:pfam07888 342 EKLEVELGREKDCNRVQLSESRRELQELKASLRVAqkekEQLQAEKQELLE 392
|
|
|