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Conserved domains on  [gi|295054193|ref|NP_001171132|]
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outer dense fiber protein 2 isoform e [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
163-495 9.33e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 68.59  E-value: 9.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELeevahelaetEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR----------ELELALLLAKLKELRKELEELEEELS 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQH 322
Cdd:COG1196   250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE--ELENELEELEERLEE 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  323 CKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI-----QCEKAQAKTASELSKSMESMRgHLQAQL 397
Cdd:COG1196   328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELeelfeALREELAELEAELAEIRNELE-ELKREI 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  398 RCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLY 477
Cdd:COG1196   407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ-RLEKELSS 485
                         330
                  ....*....|....*...
gi 295054193  478 VAEALSTLESWRSRYNQV 495
Cdd:COG1196   486 LEARLDRLEAEQRASQGV 503
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
336-684 2.71e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.05  E-value: 2.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  336 TLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKaqaKTASELSKSMESMRGHLQAQLRCKEAENSRLcMQIKNLE 415
Cdd:COG1196   671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR---RQLEELERQLEELKRELAALEEELEQLQSRL-EELEEEL 746
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  416 RSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQV 495
Cdd:COG1196   747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  496 VKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQ 575
Cdd:COG1196   827 EQEIEELEEEIEELEEKLDELEEELEELEKELEE----LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  576 LKASVKNYEGMIDNYKsqVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQfQSQLADLQQL-PDILKITEAKL 654
Cdd:COG1196   903 LKEEIEKLRERLEELE--AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE-IEALGPVNLRaIEEYEEVEERY 979
                         330       340       350
                  ....*....|....*....|....*....|
gi 295054193  655 AECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196   980 EELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
163-495 9.33e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 68.59  E-value: 9.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELeevahelaetEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR----------ELELALLLAKLKELRKELEELEEELS 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQH 322
Cdd:COG1196   250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE--ELENELEELEERLEE 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  323 CKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI-----QCEKAQAKTASELSKSMESMRgHLQAQL 397
Cdd:COG1196   328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELeelfeALREELAELEAELAEIRNELE-ELKREI 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  398 RCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLY 477
Cdd:COG1196   407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ-RLEKELSS 485
                         330
                  ....*....|....*...
gi 295054193  478 VAEALSTLESWRSRYNQV 495
Cdd:COG1196   486 LEARLDRLEAEQRASQGV 503
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
242-628 1.60e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.77  E-value: 1.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   242 KHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLLQKLSTFEETNRTLRDLLREQ 321
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQL 752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   322 HckEDSERLMEQQGTLLKRLAEADSEKArlllllqdkdkeveELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKE 401
Cdd:TIGR02168  753 S--KELTELEAEIEELEERLEEAEEELA--------------EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   402 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEA 481
Cdd:TIGR02168  817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   482 LSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKmredRDSLVERLhrqTAEYSafkLENERLKASFAP 561
Cdd:TIGR02168  893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR----IDNLQERL---SEEYS---LTLEEAEALENK 962
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193   562 MEDKLNQAHLEVQQLKASVKNY----EGMIDNYKSQvmKTRLeaDEVAAQLERCDKENKMLK---DEMNKEIEA 628
Cdd:TIGR02168  963 IEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEEL--KERY--DFLTAQKEDLTEAKETLEeaiEEIDREARE 1032
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
336-684 2.71e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.05  E-value: 2.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  336 TLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKaqaKTASELSKSMESMRGHLQAQLRCKEAENSRLcMQIKNLE 415
Cdd:COG1196   671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR---RQLEELERQLEELKRELAALEEELEQLQSRL-EELEEEL 746
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  416 RSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQV 495
Cdd:COG1196   747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  496 VKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQ 575
Cdd:COG1196   827 EQEIEELEEEIEELEEKLDELEEELEELEKELEE----LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  576 LKASVKNYEGMIDNYKsqVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQfQSQLADLQQL-PDILKITEAKL 654
Cdd:COG1196   903 LKEEIEKLRERLEELE--AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE-IEALGPVNLRaIEEYEEVEERY 979
                         330       340       350
                  ....*....|....*....|....*....|
gi 295054193  655 AECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196   980 EELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
401-666 3.14e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.55  E-value: 3.14e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAE 480
Cdd:TIGR02169  673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   481 ALSTLESWRSRYNQVVKDKGDLELeiivlndrvtDLVNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFA 560
Cdd:TIGR02169  749 LEQEIENVKSELKELEARIEELEE----------DLHKLEEALNDLEARLSHSRIPEI---QAELSKLEEEVSRIEARLR 815
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   561 PMEDKLNQAHLEVQQLKASVKNYEGM--------------IDNYKSQVMKTRLEADEVAAQLERCDKENKMLK---DEMN 623
Cdd:TIGR02169  816 EIEQKLNRLTLEKEYLEKEIQELQEQridlkeqiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELE 895
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 295054193   624 KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 666
Cdd:TIGR02169  896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
240-663 3.60e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 53.57  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  240 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLqklSTFEETNRTLRDLLR 319
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV---TEFEATTCSLEELLR 366
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  320 -EQHCKEDSErlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEEL---LQEIQCEKAQAKTASELSKSMESMRGHLQA 395
Cdd:pfam05483 367 tEQQRLEKNE---DQLKIITMELQKKSSELEEMTKFKNNKEVELEELkkiLAEDEKLLDEKKQFEKIAEELKGKEQELIF 443
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  396 QLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQL---------------------KELKQKGDRDKETLKKA----- 449
Cdd:pfam05483 444 LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELekeklknieltahcdklllenKELTQEASDMTLELKKHqedii 523
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  450 -IRAQKERAEKSEEYAEQLHVQLADKDLYVAEAL-STLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM 527
Cdd:pfam05483 524 nCKKQEERMLKQIENLEEKEMNLRDELESVREEFiQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  528 rEDRDSLVERLHRqtaEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKasvKNYEGMIDNYKSQVMKTRLEADEVAAQ 607
Cdd:pfam05483 604 -ENKNKNIEELHQ---ENKALKKKGSAENKQLNAYEIKVNKLELELASAK---QKFEEIIDNYQKEIEDKKISEEKLLEE 676
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193  608 LERCdkenKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQG 663
Cdd:pfam05483 677 VEKA----KAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
PTZ00121 PTZ00121
MAEBL; Provisional
338-632 3.82e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  338 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLC 408
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  409 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ETLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 485
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  486 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQqqsLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASFAPMEDk 565
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAE- 1629
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 295054193  566 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQ 632
Cdd:PTZ00121 1630 ------EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
430-661 6.00e-05

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 46.59  E-value: 6.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  430 EQLK-ELKQ----KGDRDKET---LKKAIRA---QKERAEKSEEY----------AEQLHVQLADKDLYVAEALSTLESw 488
Cdd:PRK10929   26 KQITqELEQakaaKTPAQAEIveaLQSALNWleeRKGSLERAKQYqqvidnfpklSAELRQQLNNERDEPRSVPPNMST- 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  489 rsrynqvvkdkGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAeysAFKLENE---RLKASFAPmEDK 565
Cdd:PRK10929  105 -----------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTE---ARRQLNEierRLQTLGTP-NTP 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  566 LNQAHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKMLKDEMNkeieaARRQFQSQLA 638
Cdd:PRK10929  170 LAQAQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA 242
                         250       260
                  ....*....|....*....|...
gi 295054193  639 dlqqlpdiLKITEaKLAECQDQL 661
Cdd:PRK10929  243 --------LESTE-LLAEQSGDL 256
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
337-662 8.31e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 39.10  E-value: 8.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  337 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLER 416
Cdd:pfam07888  32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKVEELEEKYKELSR 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  417 SGNQHKAEVEAIMEQ-------LKELKQKG--------------DRDKETLKKAIRAQKEraEKSEEYAEQLHVQLADKD 475
Cdd:pfam07888 109 SGEELAEEKDALLAQraesearIRELEEDIktltqrvleretelERMKERVKKAGAQRKE--EEAERKQLQAKLQQTEEE 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  476 LYvaEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDlVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERL 555
Cdd:pfam07888 187 LR--SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTT-AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSM 263
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  556 KASFAPMEDKLNQAHLEVQQL-----KASVKNYEGM---------------IDNYKSQVMKTRLEADEVAAQLERcdKEN 615
Cdd:pfam07888 264 AAQRDRTQAELHQARLQAAQLtlqlaDASLALREGRarwaqeretlqqsaeADKDRIEKLSAELQRLEERLQEER--MER 341
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 295054193  616 KMLKDEMNKEIEAARRQFQSQLADLQQLPDILKIT----EAKLAECQDQLQ 662
Cdd:pfam07888 342 EKLEVELGREKDCNRVQLSESRRELQELKASLRVAqkekEQLQAEKQELLE 392
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
163-495 9.33e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 68.59  E-value: 9.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELeevahelaetEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196   180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR----------ELELALLLAKLKELRKELEELEEELS 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQH 322
Cdd:COG1196   250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE--ELENELEELEERLEE 327
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  323 CKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI-----QCEKAQAKTASELSKSMESMRgHLQAQL 397
Cdd:COG1196   328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELeelfeALREELAELEAELAEIRNELE-ELKREI 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  398 RCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLY 477
Cdd:COG1196   407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ-RLEKELSS 485
                         330
                  ....*....|....*...
gi 295054193  478 VAEALSTLESWRSRYNQV 495
Cdd:COG1196   486 LEARLDRLEAEQRASQGV 503
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
242-628 1.60e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.77  E-value: 1.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   242 KHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLLQKLSTFEETNRTLRDLLREQ 321
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQL 752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   322 HckEDSERLMEQQGTLLKRLAEADSEKArlllllqdkdkeveELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKE 401
Cdd:TIGR02168  753 S--KELTELEAEIEELEERLEEAEEELA--------------EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   402 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEA 481
Cdd:TIGR02168  817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   482 LSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKmredRDSLVERLhrqTAEYSafkLENERLKASFAP 561
Cdd:TIGR02168  893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR----IDNLQERL---SEEYS---LTLEEAEALENK 962
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193   562 MEDKLNQAHLEVQQLKASVKNY----EGMIDNYKSQvmKTRLeaDEVAAQLERCDKENKMLK---DEMNKEIEA 628
Cdd:TIGR02168  963 IEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEEL--KERY--DFLTAQKEDLTEAKETLEeaiEEIDREARE 1032
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
290-648 1.85e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.82  E-value: 1.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  290 INTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQgTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEI 369
Cdd:COG1196   191 LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK-ELRKELEELEEELSRLEEELEELQEELEEAEKEI 269
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  370 QCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKA 449
Cdd:COG1196   270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  450 IRAQKERAEKSEEYAEQLHVQLADKDlyvaealSTLESWRSRYNQVVKDKGDLELEIIVLNDRVtdlvnqqqsleekmre 529
Cdd:COG1196   350 EQLLAELEEAKEELEEKLSALLEELE-------ELFEALREELAELEAELAEIRNELEELKREI---------------- 406
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  530 drDSLVERLHRqtaeysaFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLE 609
Cdd:COG1196   407 --ESLEERLER-------LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 295054193  610 RCDKENKMLKDEMNkEIEAARRQFQSQLADLQQLPDILK 648
Cdd:COG1196   478 RLEKELSSLEARLD-RLEAEQRASQGVRAVLEALESGLP 515
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
336-684 2.71e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.05  E-value: 2.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  336 TLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKaqaKTASELSKSMESMRGHLQAQLRCKEAENSRLcMQIKNLE 415
Cdd:COG1196   671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR---RQLEELERQLEELKRELAALEEELEQLQSRL-EELEEEL 746
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  416 RSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQV 495
Cdd:COG1196   747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL 826
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  496 VKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQ 575
Cdd:COG1196   827 EQEIEELEEEIEELEEKLDELEEELEELEKELEE----LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  576 LKASVKNYEGMIDNYKsqVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQfQSQLADLQQL-PDILKITEAKL 654
Cdd:COG1196   903 LKEEIEKLRERLEELE--AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE-IEALGPVNLRaIEEYEEVEERY 979
                         330       340       350
                  ....*....|....*....|....*....|
gi 295054193  655 AECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196   980 EELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
401-671 1.15e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 65.12  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  401 EAENSRLCMQIKNLERSGNQHKAEVEAI---MEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY 477
Cdd:COG1196   666 KRELKELEEELAELEAQLEKLEEELKSLkneLRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  478 VAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVE---RLHRQTAEYSAFKLENER 554
Cdd:COG1196   746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEaerRLDALERELESLEQRRER 825
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  555 LKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLercdKENKMLKDEMNKEIEAARRQFQ 634
Cdd:COG1196   826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL----KELEEEKEELEEELRELESELA 901
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 295054193  635 SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 671
Cdd:COG1196   902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
163-701 1.27e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 1.27e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:TIGR02168  275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   243 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQH 322
Cdd:TIGR02168  355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   323 CKEDSERLmeqqGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ-AQLRCKE 401
Cdd:TIGR02168  435 LKELQAEL----EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgFSEGVKA 510
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   402 AENSRLCM-----QIKNLERSGNQHKAEVEA---------IMEQLKELKQKGDRDKETLK--------KAIRAQKERAEK 459
Cdd:TIGR02168  511 LLKNQSGLsgilgVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGND 590
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   460 SEEYAEQLHVQLADKDL--YVAEALSTLESWRSRYnqVVKDKGDLELEIIVLNDR----VT---DLVNQQQSLEEKMRED 530
Cdd:TIGR02168  591 REILKNIEGFLGVAKDLvkFDPKLRKALSYLLGGV--LVVDDLDNALELAKKLRPgyriVTldgDLVRPGGVITGGSAKT 668
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   531 RDSLVERlhrqtaeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLER 610
Cdd:TIGR02168  669 NSSILER-----------RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   611 CDKENKMLKDEM---NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQK 687
Cdd:TIGR02168  738 LEAEVEQLEERIaqlSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
                          570
                   ....*....|....
gi 295054193   688 GSHELARAGARLPR 701
Cdd:TIGR02168  818 EAANLRERLESLER 831
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
296-592 1.66e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 64.69  E-value: 1.66e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   296 QKELLLQKLSTFEETNRTLRDLLREQhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQcekaq 375
Cdd:TIGR02168  226 ELALLVLRLEELREELEELQEELKEA--EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS----- 298
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   376 aktaselskSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE 455
Cdd:TIGR02168  299 ---------RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   456 RAEKSEEYAEQLHvQLADKdlyVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLE-EKMREDRDSL 534
Cdd:TIGR02168  370 LESRLEELEEQLE-TLRSK---VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEEL 445
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193   535 VERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKS 592
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
401-666 3.14e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.55  E-value: 3.14e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAE 480
Cdd:TIGR02169  673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   481 ALSTLESWRSRYNQVVKDKGDLELeiivlndrvtDLVNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFA 560
Cdd:TIGR02169  749 LEQEIENVKSELKELEARIEELEE----------DLHKLEEALNDLEARLSHSRIPEI---QAELSKLEEEVSRIEARLR 815
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   561 PMEDKLNQAHLEVQQLKASVKNYEGM--------------IDNYKSQVMKTRLEADEVAAQLERCDKENKMLK---DEMN 623
Cdd:TIGR02169  816 EIEQKLNRLTLEKEYLEKEIQELQEQridlkeqiksiekeIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELE 895
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 295054193   624 KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 666
Cdd:TIGR02169  896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
223-683 6.13e-10

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 62.47  E-value: 6.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 223 LRHNIERIKEEKDFTMLQKKHLQQEKEclmsklVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLLQ 302
Cdd:COG0419  194 LSELLEDIEDLLEALEEELKELKKLEE------IQEEQEEEELEQEIEALEERLAELEEEKE-------RLEELKARLLE 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 303 KLSTFEETNRTLRDLLREqhckedSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASEL 382
Cdd:COG0419  261 IESLELEALKIREEELRE------LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKL 334
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 383 SKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEA-------IMEQLKELKQKGDRDKETLKKA---IRA 452
Cdd:COG0419  335 EEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKalerlkqLEEAIQELKEELAELSAALEEIqeeLEE 414
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 453 QKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSR-----------------YNQVVKDKGDLELEI----IVLND 511
Cdd:COG0419  415 LEKELEELERELEELEEEIKKLEEQINQLESKELMIAELagagekcpvcgqelpeeHEKELLELYELELEEleeeLSREK 494
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 512 RVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQahLEVQQLKASVKNYEGMIDNYK 591
Cdd:COG0419  495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK--LQLQQLKEELRQLEDRLQELK 572
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 592 SQvMKTRLEADEVAAQLERcdkenkmlKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK---------LAECQDQLQ 662
Cdd:COG0419  573 EL-LEELRLLRTRKEELEE--------LRERLKELKKKLKELEERLSQLEELLQSLELSEAEneleeaeeeLESELEKLN 643
                        490       500
                 ....*....|....*....|.
gi 295054193 663 GYERKNIDLTAIISDLRSRVR 683
Cdd:COG0419  644 LQAELEELLQAALEELEEKVE 664
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
187-565 1.35e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 61.65  E-value: 1.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  187 MQKGERQmaKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEkdftmlqKKHLQQEKECLMSKLVEAEMDGAAAA 266
Cdd:COG1196   652 ITGGSRN--KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNE-------LRSLEDLLEELRRQLEELERQLEELK 722
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  267 KQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLreqhckedsERLMEQQGTLLKRLAEADS 346
Cdd:COG1196   723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL---------AKLKEEIEELEEKRQALQE 793
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  347 EKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVE 426
Cdd:COG1196   794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  427 AIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEI 506
Cdd:COG1196   874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 295054193  507 IVLNDRVTDLVNqqqsleEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDK 565
Cdd:COG1196   954 LEEEIEALGPVN------LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
358-699 1.78e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 61.23  E-value: 1.78e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   358 KDKEVEELLQEI--------QCEKAQAKTASELSkSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIM 429
Cdd:TIGR02168  675 RRREIEELEEKIeeleekiaELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   430 EQLKELKQKgdrdketlkkaIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVL 509
Cdd:TIGR02168  754 KELTELEAE-----------IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   510 NDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDN 589
Cdd:TIGR02168  823 RERLESLERRIAATERRLED----LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   590 YKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKeIEAARRQFQSQLADLQQ--LPDILK---ITEAKLAECQDQLQGY 664
Cdd:TIGR02168  899 LSEELRELESKRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSltLEEAEAlenKIEDDEEEARRRLKRL 977
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 295054193   665 ERK-----NIDLTAI--ISDLRSRVRDWQKGSHELARAGARL 699
Cdd:TIGR02168  978 ENKikelgPVNLAAIeeYEELKERYDFLTAQKEDLTEAKETL 1019
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
328-684 5.17e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 59.70  E-value: 5.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   328 ERLMEQQGTLLKRLAEADS--EKARLLLLLQDKDKEVEELLQEIQCEKAQAKtASELSKSMESMRghlqAQLRCKEAENS 405
Cdd:TIGR02169  173 EKALEELEEVEENIERLDLiiDEKRQQLERLRREREKAERYQALLKEKREYE-GYELLKEKEALE----RQKEAIERQLA 247
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   406 RLCMQIKNLERSGNQHKAEVEAIMEQLKEL----KQKGDRDKETLKKAIR---AQKERAEKS----EEYAEQLHVQLADK 474
Cdd:TIGR02169  248 SLEEELEKLTEEISELEKRLEEIEQLLEELnkkiKDLGEEEQLRVKEKIGeleAEIASLERSiaekERELEDAEERLAKL 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   475 DLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlhrqTAEYSAFKLENER 554
Cdd:TIGR02169  328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY----REKLEKLKREINE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   555 LKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIdnyksqvmkTRLEADevaaqlercdkenkmlKDEMNKEIEAARRQFQ 634
Cdd:TIGR02169  404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKI---------NELEEE----------------KEDKALEIKKQEWKLE 458
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 295054193   635 SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:TIGR02169  459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
357-684 6.10e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 59.34  E-value: 6.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  357 DKDKEVEELLQEIQ--CEKAQAKTaSELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKE 434
Cdd:COG1196   172 ERKEEAERKLERTEenLERLEDLL-EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  435 LKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKDLYVAEALSTLESwrsrynqvvkDKGDLELEIIVLNDRVT 514
Cdd:COG1196   251 LEEELEELQEELEEAEKEIEELKSELEELREELE-ELQEELLELKEEIEELEG----------EISLLRERLEELENELE 319
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  515 DLVNQQQSLEEKMrEDRDSLVERLHRQTAEYSAfklENERLKASFAPMEDKLNQAHLEVQQLKASVKNYegmIDNYKSQV 594
Cdd:COG1196   320 ELEERLEELKEKI-EALKEELEERETLLEELEQ---LLAELEEAKEELEEKLSALLEELEELFEALREE---LAELEAEL 392
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  595 MKTRLEADEVAAQLERCDKENKMLKDEM---NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 671
Cdd:COG1196   393 AEIRNELEELKREIESLEERLERLSERLedlKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472
                         330
                  ....*....|...
gi 295054193  672 TAIISDLRSRVRD 684
Cdd:COG1196   473 QEELQRLEKELSS 485
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
163-473 8.02e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.88  E-value: 8.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEkdftmlqKK 242
Cdd:COG1196   233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE-------IS 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEKECLMSKLVEAEmdgaaaaKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLRE-- 320
Cdd:COG1196   306 LLRERLEELENELEELE-------ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEElf 378
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  321 QHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELsksmesmRGHLQAQLRCK 400
Cdd:COG1196   379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE-------LEELNEELEEL 451
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193  401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdKETLKKAIRAQKERAEKSEEYAEQLHVQLAD 473
Cdd:COG1196   452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR-LEAEQRASQGVRAVLEALESGLPGVYGPVAE 523
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
226-587 1.43e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.11  E-value: 1.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  226 NIERIKEEKDFTMLQKKHLQQEKEclmsklveaemdgaaAAKQVMALKDTIGKLktEKQMTCTDINTLTRQKELLLQKLS 305
Cdd:COG1196   187 NLERLEDLLEELEKQLEKLERQAE---------------KAERYQELKAELREL--ELALLLAKLKELRKELEELEEELS 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  306 tfeETNRTLRDLLREQHCKEdserlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKS 385
Cdd:COG1196   250 ---RLEEELEELQEELEEAE------KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEE 320
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  386 MESMRGHLQAQLRCKEAENSRLCMQIKNLErsgnqhkAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAE 465
Cdd:COG1196   321 LEERLEELKEKIEALKEELEERETLLEELE-------QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  466 QLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDslverlhrqtaEY 545
Cdd:COG1196   394 EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD-----------RL 462
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 295054193  546 SAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMI 587
Cdd:COG1196   463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVR 504
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
240-663 3.60e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 53.57  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  240 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLqklSTFEETNRTLRDLLR 319
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV---TEFEATTCSLEELLR 366
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  320 -EQHCKEDSErlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEEL---LQEIQCEKAQAKTASELSKSMESMRGHLQA 395
Cdd:pfam05483 367 tEQQRLEKNE---DQLKIITMELQKKSSELEEMTKFKNNKEVELEELkkiLAEDEKLLDEKKQFEKIAEELKGKEQELIF 443
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  396 QLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQL---------------------KELKQKGDRDKETLKKA----- 449
Cdd:pfam05483 444 LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELekeklknieltahcdklllenKELTQEASDMTLELKKHqedii 523
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  450 -IRAQKERAEKSEEYAEQLHVQLADKDLYVAEAL-STLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM 527
Cdd:pfam05483 524 nCKKQEERMLKQIENLEEKEMNLRDELESVREEFiQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  528 rEDRDSLVERLHRqtaEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKasvKNYEGMIDNYKSQVMKTRLEADEVAAQ 607
Cdd:pfam05483 604 -ENKNKNIEELHQ---ENKALKKKGSAENKQLNAYEIKVNKLELELASAK---QKFEEIIDNYQKEIEDKKISEEKLLEE 676
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193  608 LERCdkenKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQG 663
Cdd:pfam05483 677 VEKA----KAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
163-537 4.05e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.56  E-value: 4.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:COG1196   675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEKEclmsklvEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdintltRQKELLLQKLSTFEETNRTLRDLLRE-Q 321
Cdd:COG1196   755 ELQERLE-------ELEEELESLEEALAKLKEEIEELEEKRQ----------ALQEELEELEEELEEAERRLDALERElE 817
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  322 HCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKE 401
Cdd:COG1196   818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  402 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK-GDRDKETLKKAIRAQKERAEKseeyaeqlhvQLADKDLYVAE 480
Cdd:COG1196   898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEElEEEYEDTLETELEREIERLEE----------EIEALGPVNLR 967
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 295054193  481 ALSTLESWRSRYNQVVKDKGDLELEIivlndrvTDLVNQQQSLEEKMREDRDSLVER 537
Cdd:COG1196   968 AIEEYEEVEERYEELKSQREDLEEAK-------EKLLEVIEELDKEKRERFKETFDK 1017
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
416-684 5.51e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.18  E-value: 5.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  416 RSGNQHKAEVEAIMEQLKELKQ---KGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRY 492
Cdd:COG1196   660 RSSLAQKRELKELEEELAELEAqleKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  493 NQVVKDKGDLELEIIVLNDRVtdlvnqqqsleEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLE 572
Cdd:COG1196   740 EELEEELEELEEELEELQERL-----------EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  573 VQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLercdkenkmlkDEMNKEI-------EAARRQFQSQLADLQQLPD 645
Cdd:COG1196   809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKL-----------DELEEELeelekelEELKEELEELEAEKEELED 877
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 295054193  646 ILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:COG1196   878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
212-683 5.75e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 53.18  E-value: 5.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  212 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDIN 291
Cdd:COG1196   391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  292 TLTRQKELLLQKLSTFEETNRTLRDLLRE----QHCKEDSERLME-QQGTLLKRLA------------------------ 342
Cdd:COG1196   471 ELQEELQRLEKELSSLEARLDRLEAEQRAsqgvRAVLEALESGLPgVYGPVAELIKvkekyetaleaalgnrlqavvven 550
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  343 EADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA---------------SELSKSMESMRGHL-------QAQLRCK 400
Cdd:COG1196   551 EEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAapgflglasdlidfdPKYEPAVRFVLGDTlvvddleQARRLAR 630
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  401 EAENSRLCMQIKN--LERSGNQH------------KAEVEAIMEQLKELKQ---KGDRDKETLKKAIRAQKERAEKSEEY 463
Cdd:COG1196   631 KLRIKYRIVTLDGdlVEPSGSITggsrnkrsslaqKRELKELEEELAELEAqleKLEEELKSLKNELRSLEDLLEELRRQ 710
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  464 AEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVtdlvnqqqsleEKMREDRDSLVERLHRQTA 543
Cdd:COG1196   711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL-----------EELEEELESLEEALAKLKE 779
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  544 EYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCD---KENKMLKD 620
Cdd:COG1196   780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEeelEELEKELE 859
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193  621 EMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVR 683
Cdd:COG1196   860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
211-687 2.25e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 50.79  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  211 HELAETEHENTVLRHNIERIKE-EKDFTML--QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKT---EKQ 284
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSlESQISELkkQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKqlsEKQ 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  285 MTCTDINTLTRQKELLLQKLST---------FEETNRTLRDLLREQHCK-EDSERLMEQQGTLLKRLAEA----DSEKAR 350
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSeisdlnnqkEQDWNKELKSELKNQEKKlEEIQNQISQNNKIISQLNEQisqlKKELTN 353
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  351 LLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLErsgnQHKAEVEAIME 430
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ----QEKELLEKEIE 429
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  431 QLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLE-------SWRSRYNQVVKDKGDLE 503
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqkelkSKEKELKKLNEEKKELE 509
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  504 LEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlhRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 583
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDL--EDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  584 EGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEmNKEIEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQG 663
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE-NEKLSSIIKNIKSKKNKLKQE---VKQIKETIKEIRNKWPE 663
                         490       500
                  ....*....|....*....|....
gi 295054193  664 YERKNIDLTAIISDLRSRVRDWQK 687
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLK 687
PTZ00121 PTZ00121
MAEBL; Provisional
338-632 3.82e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  338 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLC 408
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  409 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ETLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 485
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  486 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQqqsLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASFAPMEDk 565
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAE- 1629
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 295054193  566 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQ 632
Cdd:PTZ00121 1630 ------EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
175-671 9.52e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 48.94  E-value: 9.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   175 MNAVGCLKSEVKMQKGERQMAKRFLEERkeeleevaheLAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSK 254
Cdd:pfam15921  316 MRQLSDLESTVSQLRSELREAKRMYEDK----------IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   255 LVEAEMDGAAAAKQVMALKD-------TIGKLKTEkqmtCTDINTLTRQKELLLQKLSTfeetnrtlrdllreqHCKEDS 327
Cdd:pfam15921  386 LHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRE----LDDRNMEVQRLEALLKAMKS---------------ECQGQM 446
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   328 ERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSmesmrghLQAQLRCKEAEN--- 404
Cdd:pfam15921  447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS-------LQEKERAIEATNaei 519
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   405 ----SRLCMQIKNLERSGNQ--HKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYV 478
Cdd:pfam15921  520 tklrSRVDLKLQELQHLKNEgdHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEI 599
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   479 AEALSTLESWRsrynqVVKDKGDleLEIIVLNDRVTDLVNQQQSL----EEKMREDRDSLVER-------------LHRQ 541
Cdd:pfam15921  600 NDRRLELQEFK-----ILKDKKD--AKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERdqllnevktsrneLNSL 672
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   542 TAEYSA----FKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-------MIDNYKSQVMKTRLEADEVAAQLE- 609
Cdd:pfam15921  673 SEDYEVlkrnFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkVAMGMQKQITAKRGQIDALQSKIQf 752
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   610 ------RCDKENKMLKDEMNK-----------------EIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 666
Cdd:pfam15921  753 leeamtNANKEKHFLKEEKNKlsqelstvateknkmagELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832

                   ....*
gi 295054193   667 KNIDL 671
Cdd:pfam15921  833 ESVRL 837
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
413-694 2.02e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 47.96  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  413 NLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE---RAEKSEEYAEQLHVQLADkdlyVAEALSTLESWR 489
Cdd:COG3096   338 NLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEEneaRAEAAELEVDELKSQLAD----YQQALDVQQTRA 413
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  490 SRYNQVVK--DKGDLELEIIVLN-DRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPM---- 562
Cdd:COG3096   414 IQYQQAIAalERAKELCHLPDLTaDSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELarse 493
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  563 ---------EDKLNQAHL--EVQQLKASVKNYEgmidnyksQVMKTRLEADEVAAQLerCDKENKMLKDEmnkEIEAARR 631
Cdd:COG3096   494 awdvarellREGPDQRHLaeQVQPLRMRLSELE--------QRLRQQQSAERLLADF--CKRQGKNLDAE---ELEALHQ 560
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193  632 QFQSQLADLqqlpdilkitEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELAR 694
Cdd:COG3096   561 ELEALIESL----------SDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQ 613
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
289-489 3.93e-05

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 46.56  E-value: 3.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 289 DINTLTRQKELLLQKLSTFEETNRTLRDLLRE--QHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELL 366
Cdd:COG4372   78 DIRPQLRALRTELGTAQGEKRAAETEREAARSelQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 367 QEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHK------AEVEAIMEQLKELKQKGD 440
Cdd:COG4372  158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQarteelARRAAAAQQTAQAIQQRD 237
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 295054193 441 RDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWR 489
Cdd:COG4372  238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV 286
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
430-661 6.00e-05

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 46.59  E-value: 6.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  430 EQLK-ELKQ----KGDRDKET---LKKAIRA---QKERAEKSEEY----------AEQLHVQLADKDLYVAEALSTLESw 488
Cdd:PRK10929   26 KQITqELEQakaaKTPAQAEIveaLQSALNWleeRKGSLERAKQYqqvidnfpklSAELRQQLNNERDEPRSVPPNMST- 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  489 rsrynqvvkdkGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAeysAFKLENE---RLKASFAPmEDK 565
Cdd:PRK10929  105 -----------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTE---ARRQLNEierRLQTLGTP-NTP 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  566 LNQAHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKMLKDEMNkeieaARRQFQSQLA 638
Cdd:PRK10929  170 LAQAQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA 242
                         250       260
                  ....*....|....*....|...
gi 295054193  639 dlqqlpdiLKITEaKLAECQDQL 661
Cdd:PRK10929  243 --------LESTE-LLAEQSGDL 256
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
165-692 7.06e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 7.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   165 NRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHL 244
Cdd:TIGR02168  340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   245 QQEKECLMSKLVEAEMDgaaaakqvmALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCK 324
Cdd:TIGR02168  420 QQEIEELLKKLEEAELK---------ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   325 EDS-ERLMEQQGTL---LKRLAEADSEKARLLLLLQDK---DKEVE--------ELLQEIQCEKAQ-AKTASELSKSMES 388
Cdd:TIGR02168  491 LDSlERLQENLEGFsegVKALLKNQSGLSGILGVLSELisvDEGYEaaieaalgGRLQAVVVENLNaAKKAIAFLKQNEL 570
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   389 MR-----------GHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAI-------------MEQLKELKQ------- 437
Cdd:TIGR02168  571 GRvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPgyrivtl 650
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   438 ------------KGDRDKETL----KKAIRAQKERAEKSEEYAEQLHVQLAdkdlyvaEALSTLESWRSRYNQVVKDKGD 501
Cdd:TIGR02168  651 dgdlvrpggvitGGSAKTNSSilerRREIEELEEKIEELEEKIAELEKALA-------ELRKELEELEEELEQLRKELEE 723
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   502 LELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASfapmEDKLNQAHLEVQQLKASVK 581
Cdd:TIGR02168  724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----EAEIEELEAQIEQLKEELK 799
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   582 NYEGMIDNYKSQVMKTRLEADEVA-------AQLERCDKENKML---KDEMNKEIEAARRQFQSQLADLQQLPDILKITE 651
Cdd:TIGR02168  800 ALREALDELRAELTLLNEEAANLRerlesleRRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALL 879
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|.
gi 295054193   652 AKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHEL 692
Cdd:TIGR02168  880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
212-529 1.23e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.44  E-value: 1.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   212 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTctDIN 291
Cdd:TIGR02169  717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIP 794
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   292 TLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERlmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIqc 371
Cdd:TIGR02169  795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE--KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-- 870
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   372 EKAQAKTaselsKSMESMRGHLqaqlrckEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIR 451
Cdd:TIGR02169  871 EELEAAL-----RDLESRLGDL-------KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   452 AQKERAEKSEEYAEQLHVQLadKDLYVAEALSTLESWRSR----YNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM 527
Cdd:TIGR02169  939 PKGEDEEIPEEELSLEDVQA--ELQRVEEEIRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016

                   ..
gi 295054193   528 RE 529
Cdd:TIGR02169 1017 RE 1018
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
209-610 1.23e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 45.42  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 209 VAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCT 288
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 289 DINTLTRQKELLL-------QKLSTFEETNRTLRDLLREqhckedSERLMEQQ-----GTLLKrlaeaDSEKARLLLLLQ 356
Cdd:PRK02224 406 DLGNAEDFLEELReerdelrEREAELEATLRTARERVEE------AEALLEAGkcpecGQPVE-----GSPHVETIEEDR 474
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 357 DKDKEVEELLQEIQCEKAqaktasELSKSMESMRghlqaQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 436
Cdd:PRK02224 475 ERVEELEAELEDLEEEVE------EVEERLERAE-----DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 437 QkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVkdkgDLELEIIVLNDRVTDL 516
Cdd:PRK02224 544 E----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELN----SKLAELKERIESLERIR----TLLAAIADAEDEIERL 611
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 517 VNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKASFAPMEDKLNQAHLEVQQL---KASVKNYEGMIDNYKS 592
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELreeRDDLQAEIGAVENELE 691
                        410
                 ....*....|....*...
gi 295054193 593 QVMKTRLEADEVAAQLER 610
Cdd:PRK02224 692 ELEELRERREALENRVEA 709
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
263-692 1.39e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 45.34  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   263 AAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhckEDSERLMEQQGTLLKRLA 342
Cdd:TIGR00618  296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE---IHIRDAHEVATSIREISC 372
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   343 EADSEKARLLLLLQDK--DKEVEELL-QEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQ---IKNLER 416
Cdd:TIGR00618  373 QQHTLTQHIHTLQQQKttLTQKLQSLcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaITCTAQ 452
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   417 SGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQ--------LHVQLADKDLYVAEALStlesw 488
Cdd:TIGR00618  453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcplcgscIHPNPARQDIDNPGPLT----- 527
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   489 rSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDS---LVERLHRQTAEYSAFKLENERLKaSFAPMEDK 565
Cdd:TIGR00618  528 -RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfsiLTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSE 605
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   566 LNQAHLEVQQLKASVKNYEgmIDNYKSQVMKTRLEADEvaaQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPD 645
Cdd:TIGR00618  606 AEDMLACEQHALLRKLQPE--QDLQDVRLHLQQCSQEL---ALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQL 680
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 295054193   646 ILKITEAKLAECQDQLQGYERKNIDLTAI---ISDLRSRVRDWQKGSHEL 692
Cdd:TIGR00618  681 ALQKMQSEKEQLTYWKEMLAQCQTLLRELethIEEYDREFNEIENASSSL 730
PTZ00440 PTZ00440
reticulocyte binding protein 2-like protein; Provisional
219-671 1.45e-04

reticulocyte binding protein 2-like protein; Provisional


Pssm-ID: 240419 [Multi-domain]  Cd Length: 2722  Bit Score: 45.21  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  219 ENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAE---MDGAAAAKQVMALKDTIgkLKTEKQMTcTDINTLTR 295
Cdd:PTZ00440  729 KYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDkdlPDGKNTYEEFLQYKDTI--LNKENKIS-NDINILKE 805
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  296 QKELLLQKLSTFEETNRTLRDLLREQHckEDSERLMEQQGTLLKRLAEADSEKarlllLLQDKDKEVEELLQEIQCEKAQ 375
Cdd:PTZ00440  806 NKKNNQDLLNSYNILIQKLEAHTEKND--EELKQLLQKFPTEDENLNLKELEK-----EFNENNQIVDNIIKDIENMNKN 878
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  376 AKTASELSKSMESMRGHLQAqlrckeaensrlcmqIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE 455
Cdd:PTZ00440  879 INIIKTLNIAINRSNSNKQL---------------VEHLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKE 943
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  456 RAEK--SEEYAEQLHVQLADKDLYVAEALSTLESW-RSRYNQVVKDKGD----------LELEIIVLNDRVTDLVNQQQs 522
Cdd:PTZ00440  944 KIEKqlSDTKINNLKMQIEKTLEYYDKSKENINGNdGTHLEKLDKEKDEwehfkseidkLNVNYNILNKKIDDLIKKQH- 1022
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  523 leEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKA---SFAPMEDKLNQAHL----EVQQLKASVKNYEGMIDNYKSQV 594
Cdd:PTZ00440 1023 --DDIIELIDKLIKEKGKEIEEKVDQYISLlEKMKTklsSFHFNIDIKKYKNPkikeEIKLLEEKVEALLKKIDENKNKL 1100
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193  595 MKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDIL-KITEAKLAECQdqlqgYERKNIDL 671
Cdd:PTZ00440 1101 IEIKNKSHEHVVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDiTLNEVNEIEIE-----YERILIDH 1173
46 PHA02562
endonuclease subunit; Provisional
490-684 1.53e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 45.01  E-value: 1.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 490 SRYNQVVKDKgdleleIIVLNDRVTDLVNQQQSLEEKMREDRDsLVERLHRQTAEysafklENERLKASFAPMEDKLNQA 569
Cdd:PHA02562 166 SEMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNK-NIEEQRKKNGE------NIARKQNKYDELVEEAKTI 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 570 HLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKD----------------------EMNKEIE 627
Cdd:PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqqisegpdritkikDKLKELQ 312
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193 628 AARRQFQSQLADLQQLPD-----ILKITE--AKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PHA02562 313 HSLEKLDTAIDELEEIMDefneqSKKLLElkNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
330-588 1.58e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 45.21  E-value: 1.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   330 LMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-----SELSKSMESMRGHLQAQLRCKEAEN 404
Cdd:pfam12128  267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAvakdrSELEALEDQHGAFLDADIETAAADQ 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   405 SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyvaeALST 484
Cdd:pfam12128  347 EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAED-------DLQA 419
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   485 LES-WRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM--REDRDSLVER----LHRQTAEYSAFKLENERLKA 557
Cdd:pfam12128  420 LESeLREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLlqLENFDERIERareeQEAANAEVERLQSELRQARK 499
                          250       260       270
                   ....*....|....*....|....*....|.
gi 295054193   558 SFAPMEDKLNQAHLEVQQLKASVKNYEGMID 588
Cdd:pfam12128  500 RRDQASEALRQASRRLEERQSALDELELQLF 530
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
228-682 1.61e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 45.09  E-value: 1.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   228 ERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTF 307
Cdd:pfam15921   92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLNDSNTQ 171
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   308 EETNRTLRdLLREQHCKEDSERLMEQQGTLLKRLAEADSekaRLLLLLQDKDKEVEELLQEIQCEkaqaktASELSKSME 387
Cdd:pfam15921  172 IEQLRKMM-LSHEGVLQEIRSILVDFEEASGKKIYEHDS---MSTIHFRSLGSAISKILRELDTE------ISYLKGRIF 241
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   388 SMRGHLQAqLRCKEAENSRLCMQIKN--LERSGNQHKAEVEAIMEQLKELKQKGDrdketlkkAIRAQKERAEKSEEYAE 465
Cdd:pfam15921  242 PVEDQLEA-LKSESQNKIELLLQQHQdrIEQLISEHEVEITGLTEKASSARSQAN--------SIQSQLEIIQEQARNQN 312
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   466 QLHV-QLADKDLYVAEALSTLESWRSRYNQVVKDkgdLELEIIVLNDRVTDLVNQQQSLEEK---MREDRDSLVERLHRQ 541
Cdd:pfam15921  313 SMYMrQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKR 389
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   542 TAEYSAFKLENERL-------KASFAPMEDKLNQAHLEVQQLKASVKnyegmidnyksqVMKTRLEAdEVAAQLERCDKE 614
Cdd:pfam15921  390 EKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLK------------AMKSECQG-QMERQMAAIQGK 456
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   615 NKMLK--DEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRV 682
Cdd:pfam15921  457 NESLEkvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
205-474 2.21e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 2.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   205 ELEEVAHELAETEHEntvlRHNIERikeekdftmlQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQ 284
Cdd:TIGR02168  240 ELEELQEELKEAEEE----LEELTA----------ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   285 MTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEE 364
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAEL--EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   365 LLQEI-QCEKAQAKTASELSkSMESMRGHLQAQLRCKEAENSRLCMQIKNLERsgNQHKAEVEAIMEQLKELkQKGDRDK 443
Cdd:TIGR02168  384 LRSKVaQLELQIASLNNEIE-RLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEEL-QEELERL 459
                          250       260       270
                   ....*....|....*....|....*....|.
gi 295054193   444 ETLKKAIRAQKERAEKSEEYAEQLHVQLADK 474
Cdd:TIGR02168  460 EEALEELREELEEAEQALDAAERELAQLQAR 490
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
169-670 2.69e-04

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 44.37  E-value: 2.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 169 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHEntvLRHNIERIKEEKDFTMLQKKHLQQEK 248
Cdd:COG0419  315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKE---LEERLEELEKELEKALERLKQLEEAI 391
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 249 ECLMSKLVE---AEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREqHCKE 325
Cdd:COG0419  392 QELKEELAElsaALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE-LPEE 470
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 326 DSERLMEQQGTLLKRLaeadSEKARLLLLLQDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLrcKEAENS 405
Cdd:COG0419  471 HEKELLELYELELEEL----EEELSREKEEAELREEIEELEKELR---ELEEELIELLELEEALKEELEEKL--EKLENL 541
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 406 RLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDR------DKETLKKAIRAQKERAEKSEEYAEQL-HVQLADKDLYV 478
Cdd:COG0419  542 LEELEELKEKLQLQQLKEELRQLEDRLQELKELLEElrllrtRKEELEELRERLKELKKKLKELEERLsQLEELLQSLEL 621
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 479 AEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEK-MREDRDSLVERLHRQTAE-YSAFKLENERLK 556
Cdd:COG0419  622 SEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEiRRELQRIENEEQLEEKLEeLEQLEEELEQLR 701
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 557 ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKsQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ 636
Cdd:COG0419  702 EELEELLKKLGEIEQLIEELESRKAELEELKKELE-KLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKL 780
                        490       500       510
                 ....*....|....*....|....*....|....
gi 295054193 637 LADLQQLPDILKITEAKLAECQDQLQGYERKNID 670
Cdd:COG0419  781 SLNRYDLRRLTIRKDGNGGLVVVVYDGGEVRPIK 814
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
169-584 3.10e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 44.32  E-value: 3.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   169 KKIDSLMNAvgcLKSEVKMQKgERQMAKrfLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKdftmLQKKHLQQEK 248
Cdd:pfam15921  429 QRLEALLKA---MKSECQGQM-ERQMAA--IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKK----MTLESSERTV 498
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   249 ECLMSKLVEAEMDGAAAAKQVMALKDTIG-KLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNrtLRDLLREQhcKEDS 327
Cdd:pfam15921  499 SDLTASLQEKERAIEATNAEITKLRSRVDlKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK--VIEILRQQ--IENM 574
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   328 ERLMEQQGtllkRLAEA-DSEKARLLLLLQDKDKEVEELlqEIQCEKAQAKTaselsKSMESMRGHLQAQ-LRCKEAENS 405
Cdd:pfam15921  575 TQLVGQHG----RTAGAmQVEKAQLEKEINDRRLELQEF--KILKDKKDAKI-----RELEARVSDLELEkVKLVNAGSE 643
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   406 RLcMQIKNLERSGNQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRaqkERAEKSEEYAEQLHVQLADKDLYVAEALSTL 485
Cdd:pfam15921  644 RL-RAVKDIKQERDQLLNEVKTSRNELNSLSE----DYEVLKRNFR---NKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   486 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM----------REDRDSLVERL-------HRQTAEYSAF 548
Cdd:pfam15921  716 KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMtnankekhflKEEKNKLSQELstvatekNKMAGELEVL 795
                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 295054193   549 KLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 584
Cdd:pfam15921  796 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQE 831
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
330-637 3.74e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.96  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  330 LMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ-AQLRCKEAENSRLC 408
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmAMERERELERIRQE 356
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  409 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEAlstlESW 488
Cdd:pfam17380 357 ERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ----EEA 432
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  489 RSRYNQVVKDKGDLELEIIvlndRVTDLVNQQQsleekmredrdslVERLHRQTAEYSAFKLENERLKASFAPMEDkLNQ 568
Cdd:pfam17380 433 RQREVRRLEEERAREMERV----RLEEQERQQQ-------------VERLRQQEEERKRKKLELEKEKRDRKRAEE-QRR 494
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  569 AHLEvQQLKAsvkNYEGMIDNYKSQVMKTRLEADEVAAQLErcDKENKMLKDEMNKEIE-AARRQFQSQL 637
Cdd:pfam17380 495 KILE-KELEE---RKQAMIEEERKRKLLEKEMEERQKAIYE--EERRREAEEERRKQQEmEERRRIQEQM 558
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
209-571 4.59e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 43.56  E-value: 4.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  209 VAHELAETEHENTVLRHNIER-----------IKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIG 277
Cdd:pfam05483 430 IAEELKGKEQELIFLLQAREKeihdleiqltaIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAS 509
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  278 KLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLreqhckEDSERLMEQQGTLLKRLAEADSEKARLLLLLQD 357
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL------ESVREEFIQKGDEVKCKLDKSEENARSIEYEVL 583
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  358 KdKEVEELLQEIQCEKAQaKTASELSKSMESMRGHLQAQLRCKEAENSrlcmQIKNLERSGNQHKAEVEAIMEQLKELK- 436
Cdd:pfam05483 584 K-KEKQMKILENKCNNLK-KQIENKNKNIEELHQENKALKKKGSAENK----QLNAYEIKVNKLELELASAKQKFEEIId 657
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  437 --QKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY-VAEALSTLESWRSRYNQVVKDKgdlELEIIVLNDRV 513
Cdd:pfam05483 658 nyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHkIAEMVALMEKHKHQYDKIIEER---DSELGLYKNKE 734
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 295054193  514 TDLVNQQQSLEEKMREDRDSLVERLHRQTAEysafKLENERLKasfapMEDKLNQAHL 571
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLEIE----KEEKEKLK-----MEAKENTAIL 783
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
210-678 5.84e-04

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 43.21  E-value: 5.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 210 AHELAETEHE------------------NTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMA 271
Cdd:COG0419  241 LAELEEEKERleelkarlleiesleleaLKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 272 LKDT------IGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCK--EDSERLMEQQGTLLKRLAE 343
Cdd:COG0419  321 LEKLksleerLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKalERLKQLEEAIQELKEELAE 400
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 344 ADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQA----QLRC-------------------- 399
Cdd:COG0419  401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAElagaGEKCpvcgqelpeehekellelye 480
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLY-- 477
Cdd:COG0419  481 LELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKee 560
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 478 ---VAEALSTLESWRSRYNQVVKDKGDLElEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENER 554
Cdd:COG0419  561 lrqLEDRLQELKELLEELRLLRTRKEELE-ELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 555 lkasfapmeDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKtRLEADEVAAQLERCDKENKMLKDEM---NKEIEAARR 631
Cdd:COG0419  640 ---------EKLNLQAELEELLQAALEELEEKVEELEAEIRR-ELQRIENEEQLEEKLEELEQLEEELeqlREELEELLK 709
                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 295054193 632 QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDL 678
Cdd:COG0419  710 KLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAG 756
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
237-484 6.54e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 42.70  E-value: 6.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 237 TMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRD 316
Cdd:COG4372   72 GVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 317 llREQHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESmrghLQAQ 396
Cdd:COG4372  152 --RLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELAR----RAAA 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 397 LRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIR-AQKERAEKSEEYAEQLHVQLADKD 475
Cdd:COG4372  226 AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAyYQAYVRLRQQAAATQRGQVLAGAA 305

                 ....*....
gi 295054193 476 LYVAEALST 484
Cdd:COG4372  306 QRVAQAQAQ 314
PTZ00121 PTZ00121
MAEBL; Provisional
163-462 6.88e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 6.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERqmAKRFLEERKEELEEVAHEL--AETEHENTVLRHNIERIKEEKDFTMLQ 240
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEE 1568
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  241 KKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDintlTRQKELLLQKLSTFEETNRTLRDLLRE 320
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE----AKIKAEELKKAEEEKKKVEQLKKKEAE 1644
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  321 QHCKEDSERLMEQQGTL----LKRLAEADSEKARLLLLLQDKDKEVEELLQEiqcEKAQAKTASELSKSMESMRGHLQaQ 396
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK---EAEEAKKAEELKKKEAEEKKKAE-E 1720
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193  397 LRCKEAENSrlcMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEE 462
Cdd:PTZ00121 1721 LKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
COG5022 COG5022
Myosin heavy chain [General function prediction only];
224-519 7.64e-04

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 42.76  E-value: 7.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  224 RHNIERIKEEKDfTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKT----EKQMTCTDINTLTRQKEL 299
Cdd:COG5022   768 LKRIKKIQVIQH-GFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKtikrEKKLRETEEVEFSLKAEV 846
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  300 LLQKLSTFEETNRTLRDLLREQhCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQC---EKAQA 376
Cdd:COG5022   847 LIQKFGRSLKAKKRFSLLKKET-IYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSdliENLEF 925
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  377 KTA--SELSKSMESMRGHLQAQL-RCKEAENSRLCMQIKNLERSGNQHKAEV---EAIMEQLKELKQKGDRDKETLKKaI 450
Cdd:COG5022   926 KTEliARLKKLLNNIDLEEGPSIeYVKLPELNKLHEVESKLKETSEEYEDLLkksTILVREGNKANSELKNFKKELAE-L 1004
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295054193  451 RAQKERAEKSEEYAEQLHVQLADKDlYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQ 519
Cdd:COG5022  1005 SKQYGALQESTKQLKELPVEVAELQ-SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLR 1072
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
228-470 1.22e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  228 ERIKEEKdFTMLQKKHLQQEKECLMS------KLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEL-- 299
Cdd:pfam17380 286 ERQQQEK-FEKMEQERLRQEKEEKAReverrrKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELer 364
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  300 -LLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKT 378
Cdd:pfam17380 365 iRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  379 ASELS--KSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQ-LKELKQKG----------DRDKET 445
Cdd:pfam17380 445 AREMErvRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeLEERKQAMieeerkrkllEKEMEE 524
                         250       260
                  ....*....|....*....|....*
gi 295054193  446 LKKAIRAQKERAEKSEEYAEQLHVQ 470
Cdd:pfam17380 525 RQKAIYEEERRREAEEERRKQQEME 549
PRK09039 PRK09039
peptidoglycan -binding protein;
509-662 1.23e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.49  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 509 LNDRVTDLvNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGmid 588
Cdd:PRK09039  58 LNSQIAEL-ADLLSLERQGNQDLQDSVANL---RASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ--- 130
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295054193 589 nyksqvmktrlEADEVAAQLERcdkenkmlkdeMNKEIEAARRqfqsQLADLQQLpdiLKITEAKLAECQDQLQ 662
Cdd:PRK09039 131 -----------VSARALAQVEL-----------LNQQIAALRR----QLAALEAA---LDASEKRDRESQAKIA 175
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
412-684 2.02e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 41.56  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 412 KNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEqlhvqladkdlyVAEALSTLESwrsr 491
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET------------LEAEIEDLRE---- 265
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 492 ynqvvkDKGDLELEIIVLNDRVTDlvnQQQSLEEkMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHL 571
Cdd:PRK02224 266 ------TIAETEREREELAEEVRD---LRERLEE-LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 572 EVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAqlercdkenkmlkdemnkEIEAARRQFQSQLADLQQLPDILKITE 651
Cdd:PRK02224 336 AAQAHNEEAESLREDADDLEERAEELREEAAELES------------------ELEEAREAVEDRREEIEELEEEIEELR 397
                        250       260       270
                 ....*....|....*....|....*....|...
gi 295054193 652 AKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAE 430
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
205-633 2.21e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.20  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 205 ELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEmDGAAAAKQVMALKDTIGKLKTEKQ 284
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR 310
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 285 MTCTDINTLTRQKELLLQKLSTFEETNRTLRDL-------------LREQHCK-EDSERLMEQQGTLLKRLAEADSEKAR 350
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELkkklkelekrleeLEERHELyEEAKAKKEELERLKKRLTGLTPEKLE 390
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 351 LLLLLQDKDK-EVEELLQEIQCEKAQAKT-ASELSKSMESMRGhlqAQLRCKeaensrLCMQIKNLERSGN---QHKAEV 425
Cdd:PRK03918 391 KELEELEKAKeEIEEEISKITARIGELKKeIKELKKAIEELKK---AKGKCP------VCGRELTEEHRKElleEYTAEL 461
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 426 EAIMEQLKELKQKGDRDKETLKK--AIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALStlESWRsRYNQVVKDKGDLE 503
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELREleKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE--KKAE-EYEKLKEKLIKLK 538
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 504 LEIIVLND---RVTDLVNQQQSLEEKMREDRDSLVErLHRQTAE--YSAFKLENERLKasfapmedKLNQAHLEVQQLKA 578
Cdd:PRK03918 539 GEIKSLKKeleKLEELKKKLAELEKKLDELEEELAE-LLKELEElgFESVEELEERLK--------ELEPFYNEYLELKD 609
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 295054193 579 SVKNYEGMIDNYKsqvmKTRLEADEVAAQLERCDKENKMLKdemnKEIEAARRQF 633
Cdd:PRK03918 610 AEKELEREEKELK----KLEEELDKAFEELAETEKRLEELR----KELEELEKKY 656
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
400-656 2.25e-03

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 41.19  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdKETLK---KAIRAQKERAEKSEEYAEQLHVQLADKdl 476
Cdd:COG1269   45 ELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEE-VEKLEaelKSLEEVIKPAEKFSSEVEELTRKLEER-- 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 477 yVAEALSTLESWRSRYNQVVKDKgDLELEIIVLNDRVTDLVNQQQSLEEKmredRDSLVERLHRQTAEYSAFKLENERLk 556
Cdd:COG1269  122 -LSELDEELEDLEDLLEELEPLA-YLDFDLSLLRGLKFLLVRLGLVRREK----LEALVGVIEDEVALYGENVEASVVI- 194
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 557 aSFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQ 636
Cdd:COG1269  195 -VVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIE 273
                        250       260
                 ....*....|....*....|
gi 295054193 637 LADLQQLPDILKITEAKLAE 656
Cdd:COG1269  274 KALGDVLSKLARTEYTLAIE 293
PRK09039 PRK09039
peptidoglycan -binding protein;
358-512 2.46e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.72  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 358 KDKEVEELLQEIQcEKAQAKTASELSK-SMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 436
Cdd:PRK09039  51 KDSALDRLNSQIA-ELADLLSLERQGNqDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEK 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 437 QKGDRDK---ETLKK---AIRAQKERAEK----SEEYAEQLHVQLAD--KDLYVAEA--LSTLESWRS----RYNQVVKD 498
Cdd:PRK09039 130 QVSARALaqvELLNQqiaALRRQLAALEAaldaSEKRDRESQAKIADlgRRLNVALAqrVQELNRYRSeffgRLREILGD 209
                        170
                 ....*....|....
gi 295054193 499 KGDleleIIVLNDR 512
Cdd:PRK09039 210 REG----IRIVGDR 219
PTZ00121 PTZ00121
MAEBL; Provisional
346-626 3.63e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  346 SEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEV 425
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  426 EAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEyAEQLHVQlADKDLYVAEALSTLESWRSRYNQVVKDKGDLELE 505
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK-AEEAKKE-AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  506 IIVLNDRVTDLVNQQQSLEEKMREDR---------DSLVERLHRQTAEYSAFK-LENERLKASFAPMEDKLNQAHlEVQQ 575
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRMEVDKkikdifdnfANIIEGGKEGNLVINDSKeMEDSAIKEVADSKNMQLEEAD-AFEK 1851
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 295054193  576 LKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEI 626
Cdd:PTZ00121 1852 HKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
PTZ00121 PTZ00121
MAEBL; Provisional
163-536 4.09e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  163 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKK 242
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  243 HLQQEK-ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEllLQKLSTFEETN-----RTLRD 316
Cdd:PTZ00121 1479 AEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK--ADEAKKAEEKKkadelKKAEE 1556
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  317 LLREQHCK--EDSERLMEQQGTLLKRLAEA-DSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGhl 393
Cdd:PTZ00121 1557 LKKAEEKKkaEEAKKAEEDKNMALRKAEEAkKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK-- 1634
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  394 QAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLK---ELKQKGDRDKETLKKAIRAQKERAEKSEEY------- 463
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKkkaEEAKKAEEDEKKAAEALKKEAEEAKKAEELkkkeaee 1714
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193  464 ---AEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDleleiivlNDRVTDLVNQQQSLEEKMREDRDSLVE 536
Cdd:PTZ00121 1715 kkkAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE--------KKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
139-687 4.22e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.43  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 139 SSEKLV-SVMRLSDLSTEDDDSGHCK--MNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAE 215
Cdd:PRK03918 146 SREKVVrQILGLDDYENAYKNLGEVIkeIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 216 TEHENTVLRHNIERIKEEKdftmLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTekqmtctdintlTR 295
Cdd:PRK03918 226 LEKEVKELEELKEEIEELE----KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE------------LK 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 296 QKELLLQKLSTF-EETNRTLRDLlreqhcKEDSERLMEQQGTLLKRLAEADSEKARLLLLLqdkdKEVEELLQEIQCEKA 374
Cdd:PRK03918 290 EKAEEYIKLSEFyEEYLDELREI------EKRLSRLEEEINGIEERIKELEEKEERLEELK----KKLKELEKRLEELEE 359
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 375 QAKTASELSKSMESMRGhLQAQLRCKEAEnsRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRAQK 454
Cdd:PRK03918 360 RHELYEEAKAKKEELER-LKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKE----LKKAIEELK 432
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 455 E--------RAEKSEEYAEQLhvqLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLND--RVTDLVNQQQSLE 524
Cdd:PRK03918 433 KakgkcpvcGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELE 509
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 525 EKMREDRdslVERLHRQTAEYSAFKLENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMIDNYKSqvmktrlEADEV 604
Cdd:PRK03918 510 EKLKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEE-------ELAEL 575
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 605 AAQLERCDKENKMLKDEMNKEIEAARRQFQSqladLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRD 684
Cdd:PRK03918 576 LKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651

                 ...
gi 295054193 685 WQK 687
Cdd:PRK03918 652 LEK 654
PTZ00121 PTZ00121
MAEBL; Provisional
169-631 4.80e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 4.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  169 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEK 248
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  249 -ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR-EQHCKED 326
Cdd:PTZ00121 1446 aDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaEEAKKAD 1525
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  327 SERLMEQQgtllkrlAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSR 406
Cdd:PTZ00121 1526 EAKKAEEA-------KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  407 LCMQIKNLERSGNQHKAEVEAI-MEQLKELKQKgDRDKETLKKAIRAQKERAE---KSEEYAEQLHVQLADK---DLYVA 479
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEE-KKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEAKKaeeDKKKA 1677
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  480 EALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLeEKMREDRDSLVERLHRqtaeysafKLENERLKASF 559
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL-KKAEEENKIKAEEAKK--------EAEEDKKKAEE 1748
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295054193  560 APMEDKLNQahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLErCDKENKMLKDEMNKEIEAARR 631
Cdd:PTZ00121 1749 AKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME-VDKKIKDIFDNFANIIEGGKE 1816
46 PHA02562
endonuclease subunit; Provisional
223-444 6.99e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 39.61  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 223 LRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQ 302
Cdd:PHA02562 190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 303 KLSTFEETNRTLRDllrEQHCKEDSERLmEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQcekAQAKTASEL 382
Cdd:PHA02562 270 KIEQFQKVIKMYEK---GGVCPTCTQQI-SEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN---EQSKKLLEL 342
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 295054193 383 SKSMESMRGHLQAQlrckEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL-KQKGDRDKE 444
Cdd:PHA02562 343 KNKISTNKQSLITL----VDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIvKTKSELVKE 401
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
240-461 7.38e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 39.32  E-value: 7.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 240 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR 319
Cdd:COG4942   39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193 320 EQhckEDSERLMEQQGTLLKRLAEADSEKArlLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRC 399
Cdd:COG4942  119 EQ---LAALQRSGRNPPPALLVSPEDAQRS--VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 295054193 400 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSE 461
Cdd:COG4942  194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
401-636 8.00e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 39.48  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  401 EAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK--------------GDRDKETLKKAIRAQKERAEKSEEYAEQ 466
Cdd:COG3096   835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGvtalnrlipqlnllADESLADRVEEIRERLDEAQEAARFIQQ 914
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  467 LHVQLADKDLYVAEALSTLESW---RSRYNQVVKDKGDLELEIIVLNDRV-----------TDLVNQQQSLEEKMRE--- 529
Cdd:COG3096   915 HGNTLSKLEPIASVLQSDPEQFeqlKEDYAQAQQMQRQARQQAFALTEVVqrrahfsysdsAEMLSENSDLNEKLRQrle 994
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  530 ----DRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLkaSVKNYEGMI-------DNYKSQVMKTR 598
Cdd:COG3096   995 qaeaERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI--GVRADSGAEerarirrDELHAQLSTNR 1072
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 295054193  599 LEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQ 636
Cdd:COG3096  1073 SRRNQLEKQLTFCEAE----MDNLTRKLRKLERDYFEM 1106
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
360-667 8.02e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 39.64  E-value: 8.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   360 KEVEELLQEIQCEKAQAKT-ASELSKSMESMRGHLQAQLRCKEAEN--SRLCMQIKNLERSGNQHKAEVEAI--MEQLKE 434
Cdd:TIGR00606  747 PELRNKLQKVNRDIQRLKNdIEEQETLLGTIMPEEESAKVCLTDVTimERFQMELKDVERKIAQQAAKLQGSdlDRTVQQ 826
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   435 LKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRyNQVVKDKGDLELEIIVLNDRVT 514
Cdd:TIGR00606  827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRR-QQFEEQLVELSTEVQSLIREIK 905
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193   515 DLVNQQQSLEEKMREDRDSLVERLHRQtaeysafklENERLKAsfapmEDKLNQAHLEVQQLKASVKNYEGMI-DNYKSQ 593
Cdd:TIGR00606  906 DAKEQDSPLETFLEKDQQEKEELISSK---------ETSNKKA-----QDKVNDIKEKVKNIHGYMKDIENKIqDGKDDY 971
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 295054193   594 VMKTRLEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQLADLQQLPD--ILKITEAKLAECQDQLQGYERK 667
Cdd:TIGR00606  972 LKQKETELNTVNAQLEECEKH----QEKINEDMRLMRQDIDTQKIQERWLQDnlTLRKRENELKEVEEELKQHLKE 1043
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
337-662 8.31e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 39.10  E-value: 8.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  337 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLER 416
Cdd:pfam07888  32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKVEELEEKYKELSR 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  417 SGNQHKAEVEAIMEQ-------LKELKQKG--------------DRDKETLKKAIRAQKEraEKSEEYAEQLHVQLADKD 475
Cdd:pfam07888 109 SGEELAEEKDALLAQraesearIRELEEDIktltqrvleretelERMKERVKKAGAQRKE--EEAERKQLQAKLQQTEEE 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  476 LYvaEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDlVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERL 555
Cdd:pfam07888 187 LR--SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTT-AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSM 263
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295054193  556 KASFAPMEDKLNQAHLEVQQL-----KASVKNYEGM---------------IDNYKSQVMKTRLEADEVAAQLERcdKEN 615
Cdd:pfam07888 264 AAQRDRTQAELHQARLQAAQLtlqlaDASLALREGRarwaqeretlqqsaeADKDRIEKLSAELQRLEERLQEER--MER 341
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 295054193  616 KMLKDEMNKEIEAARRQFQSQLADLQQLPDILKIT----EAKLAECQDQLQ 662
Cdd:pfam07888 342 EKLEVELGREKDCNRVQLSESRRELQELKASLRVAqkekEQLQAEKQELLE 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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