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Conserved domains on  [gi|307775435|ref|NP_001182740|]
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inactive phospholipase D5 isoform 2 [Homo sapiens]

Protein Classification

PLDc_vPLD5_1 and PLDc_vPLD5_2 domain-containing protein( domain architecture ID 10173695)

PLDc_vPLD5_1 and PLDc_vPLD5_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLDc_vPLD5_2 cd09149
Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative ...
 247-440 1.68e-124

Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


:

Pssm-ID: 197247  Cd Length: 188  Bit Score: 360.32  E-value: 1.68e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09149    1 YVSTSPKLFCPKHRSNDLEAIYRVIQDAKQFIYISVMDYLPLLSRSYARRYWSRIDSKIREALVLRSVRVRLLISFWRKT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFDLERENACatkeqknhTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09149   81 DPLTFNFVSSLKSLCTEQANCSLEVKFFDLEEESDC--------TSPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGVG 152

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 307775435 407 LVINQADV--RNNRSIIKQLKDVFERDWYSPYAKTL 440
Cdd:cd09149  153 LVINQADGveENNATIIEQLRAAFERDWYSNYAKSL 188
PLDc_vPLD5_1 cd09146
Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative ...
 49-211 3.93e-108

Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


:

Pssm-ID: 197244 [Multi-domain]  Cd Length: 163  Bit Score: 317.57  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  49 ALVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTHPSACQGQRLFEKLLQLTSQNIEIKLVSDVT 128
Cdd:cd09146    1 ALVENIPDGINFSEHAPPHLPLSQGWMNLLDMAVKSVEIVSPLWDLNASHPSACQGQRLFERLLGLASRGVELKIVSGIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 129 ADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDLQRIFALY 208
Cdd:cd09146   81 DSTEVLVLLKKKGAEVHYVNMTALTKGRLQSSFWIVDKRHVYIGSASMDWRSLGQRKELGVIVYNCSCLALDLHRVFALY 160


                 ...
gi 307775435 209 SSL 211
Cdd:cd09146  161 WSL 163
 
Name Accession Description Interval E-value
PLDc_vPLD5_2 cd09149
Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative ...
 247-440 1.68e-124

Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


Pssm-ID: 197247  Cd Length: 188  Bit Score: 360.32  E-value: 1.68e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09149    1 YVSTSPKLFCPKHRSNDLEAIYRVIQDAKQFIYISVMDYLPLLSRSYARRYWSRIDSKIREALVLRSVRVRLLISFWRKT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFDLERENACatkeqknhTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09149   81 DPLTFNFVSSLKSLCTEQANCSLEVKFFDLEEESDC--------TSPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGVG 152

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 307775435 407 LVINQADV--RNNRSIIKQLKDVFERDWYSPYAKTL 440
Cdd:cd09149  153 LVINQADGveENNATIIEQLRAAFERDWYSNYAKSL 188
PLDc_vPLD5_1 cd09146
Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative ...
 49-211 3.93e-108

Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


Pssm-ID: 197244 [Multi-domain]  Cd Length: 163  Bit Score: 317.57  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  49 ALVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTHPSACQGQRLFEKLLQLTSQNIEIKLVSDVT 128
Cdd:cd09146    1 ALVENIPDGINFSEHAPPHLPLSQGWMNLLDMAVKSVEIVSPLWDLNASHPSACQGQRLFERLLGLASRGVELKIVSGIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 129 ADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDLQRIFALY 208
Cdd:cd09146   81 DSTEVLVLLKKKGAEVHYVNMTALTKGRLQSSFWIVDKRHVYIGSASMDWRSLGQRKELGVIVYNCSCLALDLHRVFALY 160


                 ...
gi 307775435 209 SSL 211
Cdd:cd09146  161 WSL 163
PLDc_3 pfam13918
PLD-like domain;
180-359 7.89e-107

PLD-like domain;


Pssm-ID: 464040  Cd Length: 180  Bit Score: 315.03  E-value: 7.89e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  180 SLGQMKELGVIFYNCSCLVLDLQRIFALYSSLKFKSRVPQTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKN 259
Cdd:pfam13918   1 SLGQIKELGLVFTNCKCLALDLMNIFALFSSLIFENKVPFTWSKRLCCAVDNEKALNFHLNESGGGAFFSDSPELFCGFN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  260 RSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKA 339
Cdd:pfam13918  81 RSFDEDAILHRIDDAKLSIDIALLDMLPIIKHAGAREYWPDIDDAILEAAILRGVKVRLIISEWKEADPLSFNAARSLDA 160

                         170       180
                  ....*....|....*....|
gi 307775435  340 ICTEIANCSLKVKFFDLERE 359
Cdd:pfam13918 161 FCTEIANCDLKVKFFDLEGE 180
PHA02820 PHA02820
phospholipase-D-like protein; Provisional
 42-465 1.41e-83

phospholipase-D-like protein; Provisional


Pssm-ID: 222934 [Multi-domain]  Cd Length: 424  Bit Score: 264.17  E-value: 1.41e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  42 CQNKCRIALVENIPEGLNYSEnapFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNhTHPSACQGQRLFEKLLQLTSQNIEI 121
Cdd:PHA02820   2 NPDNTIAVITETIPIGMQFDK---VYLSTFNFWREILSNTTKTLDISSFYWSLS-DEVGTNFGTMILNEIIQLPKRGVRV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 122 KL-VSDVTADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLD 200
Cdd:PHA02820  78 RIaVNKSNKPLKDVELLQMAGVEVRYIDITNILGGVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFNNSNLAAD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 201 LQRIFALYSSLKFkSRVPQTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYI 280
Cdd:PHA02820 158 LTQIFEVYWYLGV-NNLPYNWKNFYPLYYNTDHPLSLNVSGVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASKFVYV 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 281 AVMDYLP-ISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKAICTEiaNCSLKVKFFdlere 359
Cdd:PHA02820 237 SVMNFIPiIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRSSFIMRNFLRSIAMLKSK--NINIEVKLF----- 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 360 naCATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTGLVINQADVRNNRSiikQLKDVFERDWYSPYAKT 439
Cdd:PHA02820 310 --IVPDADPPIPYSRVNHAKYMVTDKTAYIGTSNWTGNYFTDTCGVSINITPDDGLGLRQ---QLEDIFIRDWNSKYSYE 384

                        410       420
                 ....*....|....*....|....*....
gi 307775435 440 L---QPTKqpNCSSLFKLKPLSNKTATDD 465
Cdd:PHA02820 385 LydtSPTK--RCRLLKNMKQCTNDIYCDE 411
Cls COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and ...
 70-432 1.92e-12

Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and metabolism]; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 441111 [Multi-domain]  Cd Length: 367  Bit Score: 68.43  E-value: 1.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  70 LFQGWMNLLNMAKKSVDIVSSHWDLNHThpsacqGQRLFEKLLQLTSQNIEIKLVSD----VTADSKVLEALKLKGAEVT 145
Cdd:COG1502   26 AFAALLEAIEAARRSIDLEYYIFDDDEV------GRRLADALIAAARRGVKVRVLLDgigsRALNRDFLRRLRAAGVEVR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 146 YMNMTAYNKGRLQSS----FWIVDKQHVYIGSAGLDWQSLGQMKELGViFYNCSCL-----VLDLQRIFALYsslkfksr 216
Cdd:COG1502  100 LFNPVRLLFRRLNGRnhrkIVVIDGRVAFVGGANITDEYLGRDPGFGP-WRDTHVRiegpaVADLQAVFAED-------- 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 217 vpqtWskrlYGVYDNEKKLQLQLNETKSQaFVSNSPKlfcpKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPisststkrt 296
Cdd:COG1502  171 ----W----NFATGEALPFPEPAGDVRVQ-VVPSGPD----SPRETIERALLAAIASARRRIYIETPYFVP--------- 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 297 ywpdlDAKIREALV---LRSVRVRLLLSfwKETD-PLTFnfiSSLKAICTEIANCSLKVKFFDlerenacatkeqknhtf 372
Cdd:COG1502  229 -----DRSLLRALIaaaRRGVDVRILLP--AKSDhPLVH---WASRSYYEELLEAGVRIYEYE----------------- 281

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307775435 373 PRLNRNKYMVTDGA-AYIG--NFDWVGndFTQNAGTGLVInqadvrNNRSIIKQLKDVFERDW 432
Cdd:COG1502  282 PGFLHAKVMVVDDEwALVGsaNLDPRS--LRLNFEVNLVI------YDPEFAAQLRARFEEDL 336
PLDc_2 pfam13091
PLD-like domain;
76-205 8.97e-06

PLD-like domain;


Pssm-ID: 463784 [Multi-domain]  Cd Length: 132  Bit Score: 44.98  E-value: 8.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435   76 NLLNMAKKSVDIVSSHWDLNhthpsacqgQRLFEKLLQLTSQNIEIKLVSDVTADS---------KVLEALKLKGAEVTY 146
Cdd:pfam13091   3 DLINSAKKSIDIATYYFVPD---------REIIDALIAAAKRGVDVRIILDSNKDDaggpkkaslKELRSLLRAGVEIRE 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 307775435  147 MNMTAynkGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNcSCLVLDLQRIF 205
Cdd:pfam13091  74 YQSFL---RSMHAKFYIIDGKTVIVGSANLTRRALRLNLENNVVIKD-PELAQELEKEF 128
PLDc smart00155
Phospholipase D. Active site motifs; Phosphatidylcholine-hydrolyzing phospholipase D (PLD) ...
 153-178 2.28e-03

Phospholipase D. Active site motifs; Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved.


Pssm-ID: 197546 [Multi-domain]  Cd Length: 28  Bit Score: 35.44  E-value: 2.28e-03
                           10        20
                   ....*....|....*....|....*.
gi 307775435   153 NKGRLQSSFWIVDKQHVYIGSAGLDW 178
Cdd:smart00155   1 YDGVLHTKLMIVDDEIAYIGSANLDG 26
Cls COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and ...
 69-206 2.29e-03

Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and metabolism]; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 441111 [Multi-domain]  Cd Length: 367  Bit Score: 40.31  E-value: 2.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  69 SLFQGWMNLLNMAKKSVDIVSSHWDLnhthpsacqGQRLFEKLLQLTSQNIEIKLVSDVTADSKV--------LEALKLK 140
Cdd:COG1502  203 TIERALLAAIASARRRIYIETPYFVP---------DRSLLRALIAAARRGVDVRILLPAKSDHPLvhwasrsyYEELLEA 273

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 307775435 141 GAEVTYmnmtaYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCScLVLDLQRIFA 206
Cdd:COG1502  274 GVRIYE-----YEPGFLHAKVMVVDDEWALVGSANLDPRSLRLNFEVNLVIYDPE-FAAQLRARFE 333
 
Name Accession Description Interval E-value
PLDc_vPLD5_2 cd09149
Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative ...
 247-440 1.68e-124

Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


Pssm-ID: 197247  Cd Length: 188  Bit Score: 360.32  E-value: 1.68e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09149    1 YVSTSPKLFCPKHRSNDLEAIYRVIQDAKQFIYISVMDYLPLLSRSYARRYWSRIDSKIREALVLRSVRVRLLISFWRKT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFDLERENACatkeqknhTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09149   81 DPLTFNFVSSLKSLCTEQANCSLEVKFFDLEEESDC--------TSPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGVG 152

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 307775435 407 LVINQADV--RNNRSIIKQLKDVFERDWYSPYAKTL 440
Cdd:cd09149  153 LVINQADGveENNATIIEQLRAAFERDWYSNYAKSL 188
PLDc_vPLD5_1 cd09146
Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative ...
 49-211 3.93e-108

Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipases D5 (PLD5, EC 3.1.4.4), homologs of the vaccinia virus protein K4 encoded by the HindIII K4L gene. Vertebrate PLD5 has been assigned to the PLD superfamily, since it shows high sequence similarity to other human homologs of protein K4, which contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). However, due to the lack of functionally important histidine and lysine residues in the HKD motif, vetebrate PLD5 has been characterized as an inactive PLD.


Pssm-ID: 197244 [Multi-domain]  Cd Length: 163  Bit Score: 317.57  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  49 ALVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTHPSACQGQRLFEKLLQLTSQNIEIKLVSDVT 128
Cdd:cd09146    1 ALVENIPDGINFSEHAPPHLPLSQGWMNLLDMAVKSVEIVSPLWDLNASHPSACQGQRLFERLLGLASRGVELKIVSGIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 129 ADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDLQRIFALY 208
Cdd:cd09146   81 DSTEVLVLLKKKGAEVHYVNMTALTKGRLQSSFWIVDKRHVYIGSASMDWRSLGQRKELGVIVYNCSCLALDLHRVFALY 160


                 ...
gi 307775435 209 SSL 211
Cdd:cd09146  161 WSL 163
PLDc_3 pfam13918
PLD-like domain;
180-359 7.89e-107

PLD-like domain;


Pssm-ID: 464040  Cd Length: 180  Bit Score: 315.03  E-value: 7.89e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  180 SLGQMKELGVIFYNCSCLVLDLQRIFALYSSLKFKSRVPQTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKN 259
Cdd:pfam13918   1 SLGQIKELGLVFTNCKCLALDLMNIFALFSSLIFENKVPFTWSKRLCCAVDNEKALNFHLNESGGGAFFSDSPELFCGFN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  260 RSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKA 339
Cdd:pfam13918  81 RSFDEDAILHRIDDAKLSIDIALLDMLPIIKHAGAREYWPDIDDAILEAAILRGVKVRLIISEWKEADPLSFNAARSLDA 160

                         170       180
                  ....*....|....*....|
gi 307775435  340 ICTEIANCSLKVKFFDLERE 359
Cdd:pfam13918 161 FCTEIANCDLKVKFFDLEGE 180
PHA02820 PHA02820
phospholipase-D-like protein; Provisional
 42-465 1.41e-83

phospholipase-D-like protein; Provisional


Pssm-ID: 222934 [Multi-domain]  Cd Length: 424  Bit Score: 264.17  E-value: 1.41e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  42 CQNKCRIALVENIPEGLNYSEnapFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNhTHPSACQGQRLFEKLLQLTSQNIEI 121
Cdd:PHA02820   2 NPDNTIAVITETIPIGMQFDK---VYLSTFNFWREILSNTTKTLDISSFYWSLS-DEVGTNFGTMILNEIIQLPKRGVRV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 122 KL-VSDVTADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLD 200
Cdd:PHA02820  78 RIaVNKSNKPLKDVELLQMAGVEVRYIDITNILGGVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFNNSNLAAD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 201 LQRIFALYSSLKFkSRVPQTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYI 280
Cdd:PHA02820 158 LTQIFEVYWYLGV-NNLPYNWKNFYPLYYNTDHPLSLNVSGVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASKFVYV 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 281 AVMDYLP-ISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKAICTEiaNCSLKVKFFdlere 359
Cdd:PHA02820 237 SVMNFIPiIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRSSFIMRNFLRSIAMLKSK--NINIEVKLF----- 309

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 360 naCATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTGLVINQADVRNNRSiikQLKDVFERDWYSPYAKT 439
Cdd:PHA02820 310 --IVPDADPPIPYSRVNHAKYMVTDKTAYIGTSNWTGNYFTDTCGVSINITPDDGLGLRQ---QLEDIFIRDWNSKYSYE 384

                        410       420
                 ....*....|....*....|....*....
gi 307775435 440 L---QPTKqpNCSSLFKLKPLSNKTATDD 465
Cdd:PHA02820 385 LydtSPTK--RCRLLKNMKQCTNDIYCDE 411
PLDc_vPLD3_4_5_like_2 cd09107
Putative catalytic domain, repeat 2, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral ...
 247-433 5.84e-78

Putative catalytic domain, repeat 2, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral envelope proteins K4 and p37, and similar proteins; Putative catalytic domain, repeat 2, of vertebrate phospholipases D, PLD3, PLD4, and PLD5 (EC 3.1.4.4), viral envelope proteins (vaccinia virus proteins K4 and p37), and similar proteins. Most family members contain two copies of the HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified into the phospholipase D (PLD) superfamily. Proteins in this subfamily are associated with Golgi membranes, altering their lipid content by the conversion of phospholipids into phosphatidic acid, which is thought to be involved in the regulation of lipid movement. ADP ribosylation factor (ARF), a small guanosine triphosphate binding protein, might be required activity. The vaccinia virus p37 protein, encoded by the F13L gene, is also associated with Golgi membranes and is required for the envelopment and spread of the extracellular enveloped virus (EEV). The vaccinia virus protein K4, encoded by the HindIII K4L gene, remains to be characterized. Sequence analysis indicates that the vaccinia virus proteins K4 and p37 might have evolved from one or more captured eukaryotic genes involved in cellular lipid metabolism. Up to date, no catalytic activity of PLD3 has been shown. Furthermore, due to the lack of functional important histidine and lysine residues in the HKD motif, mammalian PLD5 has been characterized as an inactive PLD. The poxvirus p37 proteins may also lack PLD enzymatic activity, since they contain only one partially conserved HKD motif (N-x-K-x(4)-D).


Pssm-ID: 197206 [Multi-domain]  Cd Length: 175  Bit Score: 240.62  E-value: 5.84e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09107    1 FLSSSPPELCPPGRTDDLDALLSTIDSAKKFIDISVMDYVPLSRYADPRKYWPVIDNALRRAAVDRGVKVRLLVSNWKHT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFDLERENACatkeqkNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09107   81 DPSMDAFLKSLQLLKSGVGNGDIEVKIFTVPGDQST------KIPFARVNHAKYMVTDERAYIGTSNWSGDYFYNTAGVS 154

                        170       180
                 ....*....|....*....|....*..
gi 307775435 407 LVINQADVRNnrsiikQLKDVFERDWY 433
Cdd:cd09107  155 LVINDPAIVQ------QLKDVFERDWN 175
PLDc_vPLD3_2 cd09147
Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD3; Putative catalytic ...
 247-437 2.68e-59

Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD3; Putative catalytic domain, repeat 2, of phospholipase D3 (PLD3, EC 3.1.4.4). The human protein is also known as Hu-K4 or HUK4 and it was identified as a human homolog of the vaccinia virus protein K4, which is encoded by the HindIII K4L gene. PLD3 is found in many human organs with highest expression levels found in the central nervous system. Due to the presence of two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), PLD3 has been assigned to the PLD superfamily although no catalytic activity has been detected experimentally. PLD3 is a membrane-bound protein that colocalizes with protein disulfide isomerase, an endoplasmic reticulum (ER) protein. Like other homologs of protein K4, PLD3 might alter the lipid content of associated membranes by selectively hydrolyzing phosphatidylcholine (PC) into the corresponding phosphatidic acid, which is thought to be involved in the regulation of lipid movement.


Pssm-ID: 197245  Cd Length: 186  Bit Score: 192.88  E-value: 2.68e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09147    1 YLSSSPPPLCASGRTPDLQSILNVIDNARSFVYIAVMNYLPTLEFSHPHRYWPAIDDGLRRATYERGVKVRLLISCWGHS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFDLErenacATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09147   81 EPSMFAFLRSLAALRDNTTHSDIQVKIFVVP-----ADEAQKKIPYARVNHNKYMVTDRVAYIGTSNWSGDYFTNTAGSA 155

                        170       180       190
                 ....*....|....*....|....*....|.
gi 307775435 407 LVINQADVRNNRSIIKQLKDVFERDWYSPYA 437
Cdd:cd09147  156 LVVNQTGRSASGTLQSQLQAVFERDWDSPYS 186
PLDc_vPLD3_4_5_like_1 cd09106
Putative catalytic domain, repeat 1, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral ...
 50-194 1.45e-56

Putative catalytic domain, repeat 1, of vertebrate phospholipases, PLD3, PLD4 and PLD5, viral envelope proteins K4 and p37, and similar proteins; Putative catalytic domain, repeat 1, of vertebrate phospholipases D, PLD3, PLD4, and PLD5 (EC 3.1.4.4), viral envelope proteins (vaccinia virus proteins K4 and p37), and similar proteins. Most family members contain two copies of the HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified into the phospholipase D (PLD) superfamily. Proteins in this subfamily are associated with Golgi membranes, altering their lipid content by the conversion of phospholipids into phosphatidic acid, which is thought to be involved in the regulation of lipid movement. ADP ribosylation factor (ARF), a small guanosine triphosphate binding protein, might be required activity. The vaccinia virus p37 protein, encoded by the F13L gene, is also associated with Golgi membranes and is required for the envelopment and spread of the extracellular enveloped virus (EEV). The vaccinia virus protein K4, encoded by the HindIII K4L gene, remains to be characterized. Sequence analysis indicates that the vaccinia virus proteins K4 and p37 might have evolved from one or more captured eukaryotic genes involved in cellular lipid metabolism. Up to date, no catalytic activity of PLD3 has been shown. Furthermore, due to the lack of functional important histidine and lysine residues in the HKD motif, mammalian PLD5 has been characterized as an inactive PLD. The poxvirus p37 proteins may also lack PLD enzymatic activity, since they contain only one partially conserved HKD motif (N-x-K-x(4)-D).


Pssm-ID: 197205 [Multi-domain]  Cd Length: 153  Bit Score: 184.76  E-value: 1.45e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  50 LVENIPEGLNYSENApFHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTH----PSACQGQRLFEKLLQLTSQNIEIKLVS 125
Cdd:cd09106    1 LVESIPEGLTFLSSS-SHLSTFEAWMELISSAKKSIDIASFYWNLRGTDtnpdSSAQEGEDIFNALLEAAKRGVKIRILQ 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307775435 126 DVTADSK----VLEALKLKGAEVTYMNMT-AYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNC 194
Cdd:cd09106   80 DKPSKDKpdedDLELAALGGAEVRSLDFTkLIGGGVLHTKFWIVDGKHFYLGSANLDWRSLTQVKELGVYIYNC 153
PLDc_vPLD4_2 cd09148
Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD4; Putative catalytic ...
 247-437 8.87e-55

Putative catalytic domain, repeat 2, of vertebrate phospholipase PLD4; Putative catalytic domain, repeat 2, of vertebrate phospholipases D4 (PLD4, EC 3.1.4.4), homologs of the vaccinia virus protein K4 which is encoded by the HindIII K4L gene. Due to the presence of two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), PLD4 has been assigned to PLD superfamily although no catalytic activity has been detected to date. Unlike PLD1 and PLD2, PLD4 does not contain Phox (PX) and Pleckstrin homology (PH) domains but has a putative transmembrane domain. Like other vertebrate homologs of protein K4, PLD4 might be associated with Golgi membranes and alter their lipid content by selectively hydrolyze phosphatidylcholine (PC) into corresponding phosphatidic acid, which is thought to be involved in the regulation of lipid movement.


Pssm-ID: 197246  Cd Length: 187  Bit Score: 181.20  E-value: 8.87e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 247 FVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKET 326
Cdd:cd09148    1 YLSASPPALCPTGRTSDLQAILSVISQAQEFIYISVMEYFPTCRFCHPKRYWSVLDNALRAAAFDRRVLIRLLISCGRHS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 327 DPLTFNFISSLKAICTEIANCSLKVKFFdlerenACATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTG 406
Cdd:cd09148   81 DPDMFPFLRSLNALSNPPLSISVHVKLF------IVPVGNQTNIPYSRVNHNKFMVTDKAAYIGTSNWSEDYFLNTAGVG 154

                        170       180       190
                 ....*....|....*....|....*....|...
gi 307775435 407 LVINQADVRNNR--SIIKQLKDVFERDWYSPYA 437
Cdd:cd09148  155 LVILQSPGANEEmlPVQEQLRSLFERDWSSPYA 187
PLDc_vPLD3_1 cd09144
Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3; Putative catalytic ...
 50-208 3.22e-50

Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3; Putative catalytic domain, repeat 1, of phospholipase D3 (PLD3, EC 3.1.4.4). The human protein is also known as Hu-K4 or HUK4 and it was identified as a human homolog of the vaccinia virus protein K4, which is encoded by the HindIII K4L gene. PLD3 is found in many human organs with highest expression levels found in the central nervous system. Due to the presence of two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), PLD3 has been assigned to the PLD superfamily although no catalytic activity has been detected experimentally. PLD3 is a membrane-bound protein that colocalizes with protein disulfide isomerase, an endoplasmic reticulum (ER) protein. Like other homologs of protein K4, PLD3 might alter the lipid content of associated membranes by selectively hydrolyzing phosphatidylcholine (PC) into the corresponding phosphatidic acid, which is thought to be involved in the regulation of lipid movement.


Pssm-ID: 197242 [Multi-domain]  Cd Length: 172  Bit Score: 168.97  E-value: 3.22e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  50 LVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHWDL--NHTH---PSACQGQRLFEKLLQLTSQNIEIKLV 124
Cdd:cd09144    2 LVESIPEGLVFNSSSTINPSIYQAWLNLISAAQSSLDIASFYWTLtnSDTHtqePSANQGEQILKKLGQLSQSGVYVRIA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 125 SDVTAD---SKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDL 201
Cdd:cd09144   82 VDKPADpkpMEDINALSSYGADVRMVDMRKLTTGVLHTKFWVVDKKHFYIGSANMDWRSLTQVKELGAVVYNCSCLAEDL 161


                 ....*..
gi 307775435 202 QRIFALY 208
Cdd:cd09144  162 GKIFEAY 168
PHA03003 PHA03003
palmytilated EEV membrane glycoprotein; Provisional
 45-440 5.68e-50

palmytilated EEV membrane glycoprotein; Provisional


Pssm-ID: 177506 [Multi-domain]  Cd Length: 369  Bit Score: 174.47  E-value: 5.68e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  45 KCRIalVENIPEGLNYSENapfHLSLFQGWMNLLNMAKKSVDIVSSHWDLNHTHpsacQGQRLFEKLLQLTSQNIEIKLV 124
Cdd:PHA03003  12 GCRI--VETLPKSLGIATQ---HMSTYECFDEIISQAKKYIYIASFCCNLRSTP----EGRLILDKLKEAAESGVKVTIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 125 SDVTADSKVLEalKLKGAEVTYMNM---TAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGvIFYNCSCLVLDL 201
Cdd:PHA03003  83 VDEQSGDKDEE--ELQSSNINYIKVdigKLNNVGVLLGSFWVSDDRRCYIGNASLTGGSISTIKTLG-VYSTYPPLATDL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 202 QRIFALYSSLkfkSRVPQTWSkRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIA 281
Cdd:PHA03003 160 RRRFDTFKAF---NKNKSVFN-RLCCACCLPVSTKYHINNPIGGVFFSDSPEHLLGYSRTLDADVVLHKIKSAKKSIDLE 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 282 VMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKAICTeiaNCSLKVKFFdlerena 361
Cdd:PHA03003 236 LLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKKNDVYSMASVKSLQALCV---GNDLSVKVF------- 305

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 362 catkeqknhTFPrlNRNKYMVTDGA-AYI--GNFDwvGNDFTQNAGTGLviNQADvrnnRSIIKQLKDVFERDWYSPYAK 438
Cdd:PHA03003 306 ---------RIP--NNTKLLIVDDEfAHItsANFD--GTHYLHHAFVSF--NTID----KELVKELSAIFERDWTSSYSK 366


                 ..
gi 307775435 439 TL 440
Cdd:PHA03003 367 PL 368
PLDc_vPLD4_1 cd09145
Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD4; Putative catalytic ...
 50-208 4.98e-45

Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD4; Putative catalytic domain, repeat 1, of vertebrate phospholipases D4 (PLD4, EC 3.1.4.4), homologs of the vaccinia virus protein K4 which is encoded by the HindIII K4L gene. Due to the presence of two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), PLD4 has been assigned to PLD superfamily although no catalytic activity has been detected to date. Unlike PLD1 and PLD2, PLD4 does not contain Phox (PX) and Pleckstrin homology (PH) domains but has a putative transmembrane domain. Like other vertebrate homologs of protein K4, PLD4 might be associated with Golgi membranes and alter their lipid content by selectively hydrolyze phosphatidylcholine (PC) into corresponding phosphatidic acid, which is thought to be involved in the regulation of lipid movement.


Pssm-ID: 197243 [Multi-domain]  Cd Length: 170  Bit Score: 155.07  E-value: 4.98e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  50 LVENIPEGLNYSENAPFHLSLFQGWMNLLNMAKKSVDIVSSHW-----DLNHTHPSACQGQRLFEKLLQLTSQNIEIKL- 123
Cdd:cd09145    1 LVESIPEDLTYEGNSTFALPLQKAWTKLLDMAQEQVHVASYYWsltgeDIGVNDSSSLPGEDILKELAELLSRNVSVRAa 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 124 --VSDVTADSKVLEALKLKGAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDL 201
Cdd:cd09145   81 asIPTLAANSTDLKILRQKGAHVRKVNFGRLTGGVLHSKFWIIDKKHIYVGSANMDWRSLTQVKELGAVIYNCSSLAKDL 160


                 ....*..
gi 307775435 202 QRIFALY 208
Cdd:cd09145  161 HKTFQTY 167
Cls COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and ...
 70-432 1.92e-12

Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and metabolism]; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 441111 [Multi-domain]  Cd Length: 367  Bit Score: 68.43  E-value: 1.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  70 LFQGWMNLLNMAKKSVDIVSSHWDLNHThpsacqGQRLFEKLLQLTSQNIEIKLVSD----VTADSKVLEALKLKGAEVT 145
Cdd:COG1502   26 AFAALLEAIEAARRSIDLEYYIFDDDEV------GRRLADALIAAARRGVKVRVLLDgigsRALNRDFLRRLRAAGVEVR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 146 YMNMTAYNKGRLQSS----FWIVDKQHVYIGSAGLDWQSLGQMKELGViFYNCSCL-----VLDLQRIFALYsslkfksr 216
Cdd:COG1502  100 LFNPVRLLFRRLNGRnhrkIVVIDGRVAFVGGANITDEYLGRDPGFGP-WRDTHVRiegpaVADLQAVFAED-------- 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 217 vpqtWskrlYGVYDNEKKLQLQLNETKSQaFVSNSPKlfcpKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPisststkrt 296
Cdd:COG1502  171 ----W----NFATGEALPFPEPAGDVRVQ-VVPSGPD----SPRETIERALLAAIASARRRIYIETPYFVP--------- 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 297 ywpdlDAKIREALV---LRSVRVRLLLSfwKETD-PLTFnfiSSLKAICTEIANCSLKVKFFDlerenacatkeqknhtf 372
Cdd:COG1502  229 -----DRSLLRALIaaaRRGVDVRILLP--AKSDhPLVH---WASRSYYEELLEAGVRIYEYE----------------- 281

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307775435 373 PRLNRNKYMVTDGA-AYIG--NFDWVGndFTQNAGTGLVInqadvrNNRSIIKQLKDVFERDW 432
Cdd:COG1502  282 PGFLHAKVMVVDDEwALVGsaNLDPRS--LRLNFEVNLVI------YDPEFAAQLRARFEEDL 336
PLDc_SF cd00138
Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D ...
 74-191 4.51e-09

Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D (PLD) superfamily proteins. The PLD superfamily is composed of a large and diverse group of proteins including plant, mammalian and bacterial PLDs, bacterial cardiolipin (CL) synthases, bacterial phosphatidylserine synthases (PSS), eukaryotic phosphatidylglycerophosphate (PGP) synthase, eukaryotic tyrosyl-DNA phosphodiesterase 1 (Tdp1), and some bacterial endonucleases (Nuc and BfiI), among others. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze the transphosphatidylation of phospholipids to acceptor alcohols. The majority of members in this superfamily contain a short conserved sequence motif (H-x-K-x(4)-D, where x represents any amino acid residue), called the HKD signature motif. There are varying expanded forms of this motif in different family members. Some members contain variant HKD motifs. Most PLD enzymes are monomeric proteins with two HKD motif-containing domains. Two HKD motifs from two domains form a single active site. Some PLD enzymes have only one copy of the HKD motif per subunit but form a functionally active dimer, which has a single active site at the dimer interface containing the two HKD motifs from both subunits. Different PLD enzymes may have evolved through domain fusion of a common catalytic core with separate substrate recognition domains. Despite their various catalytic functions and a very broad range of substrate specificities, the diverse group of PLD enzymes can bind to a phosphodiester moiety. Most of them are active as bi-lobed monomers or dimers, and may possess similar core structures for catalytic activity. They are generally thought to utilize a common two-step ping-pong catalytic mechanism, involving an enzyme-substrate intermediate, to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group.


Pssm-ID: 197200 [Multi-domain]  Cd Length: 119  Bit Score: 54.44  E-value: 4.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  74 WMNLLNMAKKSVDIVSSHWDLNHthpsacqGQRLFEKLLQLTSQNIEIKLVSD------VTADSKVLEALKLKGAEVTYM 147
Cdd:cd00138    3 LLELLKNAKESIFIATPNFSFNS-------ADRLLKALLAAAERGVDVRLIIDkppnaaGSLSAALLEALLRAGVNVRSY 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 307775435 148 NMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIF 191
Cdd:cd00138   76 VTPPHFFERLHAKVVVIDGEVAYVGSANLSTASAAQNREAGVLV 119
PLDc_2 pfam13091
PLD-like domain;
271-432 2.18e-06

PLD-like domain;


Pssm-ID: 463784 [Multi-domain]  Cd Length: 132  Bit Score: 46.90  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  271 IDDAKQYVYIAVMdYLPISststkrtywPDLDAKIREALvLRSVRVRLLLSFWKETDPltFNFISSLKAIcTEIANCSLK 350
Cdd:pfam13091   5 INSAKKSIDIATY-YFVPD---------REIIDALIAAA-KRGVDVRIILDSNKDDAG--GPKKASLKEL-RSLLRAGVE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  351 VKFFDlerenacatkeqknhTFPRLNRNKYMVTDGA-AYIGNFDWVGNDFTQNAGTGLVINQADvrnnrsIIKQLKDVFE 429
Cdd:pfam13091  71 IREYQ---------------SFLRSMHAKFYIIDGKtVIVGSANLTRRALRLNLENNVVIKDPE------LAQELEKEFD 129


                  ...
gi 307775435  430 RDW 432
Cdd:pfam13091 130 RLW 132
Cls COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and ...
 264-447 4.99e-06

Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and metabolism]; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 441111 [Multi-domain]  Cd Length: 367  Bit Score: 48.40  E-value: 4.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 264 IDAIYSVIDDAKQYVYIAVMDYLPisststkrtywPDLDAKIREALVL---RSVRVRLLLSfWKETDPLTFNFISSLKAi 340
Cdd:COG1502   27 FAALLEAIEAARRSIDLEYYIFDD-----------DEVGRRLADALIAaarRGVKVRVLLD-GIGSRALNRDFLRRLRA- 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 341 cteiANCslKVKFFDlerenacatkeQKNHTFPRLNR---NKYMVTDGA-AYIGNFDWVGNDFTQNAGTGLVINqADVRN 416
Cdd:COG1502   94 ----AGV--EVRLFN-----------PVRLLFRRLNGrnhRKIVVIDGRvAFVGGANITDEYLGRDPGFGPWRD-THVRI 155

                        170       180       190
                 ....*....|....*....|....*....|.
gi 307775435 417 NRSIIKQLKDVFERDWYSPYAKTLQPTKQPN 447
Cdd:COG1502  156 EGPAVADLQAVFAEDWNFATGEALPFPEPAG 186
PLDc_SF cd00138
Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D ...
 265-409 7.61e-06

Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D (PLD) superfamily proteins. The PLD superfamily is composed of a large and diverse group of proteins including plant, mammalian and bacterial PLDs, bacterial cardiolipin (CL) synthases, bacterial phosphatidylserine synthases (PSS), eukaryotic phosphatidylglycerophosphate (PGP) synthase, eukaryotic tyrosyl-DNA phosphodiesterase 1 (Tdp1), and some bacterial endonucleases (Nuc and BfiI), among others. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze the transphosphatidylation of phospholipids to acceptor alcohols. The majority of members in this superfamily contain a short conserved sequence motif (H-x-K-x(4)-D, where x represents any amino acid residue), called the HKD signature motif. There are varying expanded forms of this motif in different family members. Some members contain variant HKD motifs. Most PLD enzymes are monomeric proteins with two HKD motif-containing domains. Two HKD motifs from two domains form a single active site. Some PLD enzymes have only one copy of the HKD motif per subunit but form a functionally active dimer, which has a single active site at the dimer interface containing the two HKD motifs from both subunits. Different PLD enzymes may have evolved through domain fusion of a common catalytic core with separate substrate recognition domains. Despite their various catalytic functions and a very broad range of substrate specificities, the diverse group of PLD enzymes can bind to a phosphodiester moiety. Most of them are active as bi-lobed monomers or dimers, and may possess similar core structures for catalytic activity. They are generally thought to utilize a common two-step ping-pong catalytic mechanism, involving an enzyme-substrate intermediate, to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group.


Pssm-ID: 197200 [Multi-domain]  Cd Length: 119  Bit Score: 45.20  E-value: 7.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 265 DAIYSVIDDAKQYVYIAvMDYLpisstsTKRTYWPDLDAKIreALVLRSVRVRLLlsfwkeTDPLTFNFISSLKAICTEI 344
Cdd:cd00138    1 EALLELLKNAKESIFIA-TPNF------SFNSADRLLKALL--AAAERGVDVRLI------IDKPPNAAGSLSAALLEAL 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 307775435 345 ANCSLKVKFFDLERENAcatkeQKNHTfprlnrnKYMVTDGA-AYIGNFDWVGNDFTQNAGTGLVI 409
Cdd:cd00138   66 LRAGVNVRSYVTPPHFF-----ERLHA-------KVVVIDGEvAYVGSANLSTASAAQNREAGVLV 119
PLDc_2 pfam13091
PLD-like domain;
76-205 8.97e-06

PLD-like domain;


Pssm-ID: 463784 [Multi-domain]  Cd Length: 132  Bit Score: 44.98  E-value: 8.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435   76 NLLNMAKKSVDIVSSHWDLNhthpsacqgQRLFEKLLQLTSQNIEIKLVSDVTADS---------KVLEALKLKGAEVTY 146
Cdd:pfam13091   3 DLINSAKKSIDIATYYFVPD---------REIIDALIAAAKRGVDVRIILDSNKDDaggpkkaslKELRSLLRAGVEIRE 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 307775435  147 MNMTAynkGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNcSCLVLDLQRIF 205
Cdd:pfam13091  74 YQSFL---RSMHAKFYIIDGKTVIVGSANLTRRALRLNLENNVVIKD-PELAQELEKEF 128
PLDc_unchar1_2 cd09128
Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins; ...
 264-432 2.74e-05

Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins; Putative catalytic domain, repeat 2, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.


Pssm-ID: 197226 [Multi-domain]  Cd Length: 142  Bit Score: 43.80  E-value: 2.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 264 IDAIYSVIDDAKQYVYIAVMDYLPisststkrtywpdlDAKIREALV---LRSVRVRLLL-SFWKETDPlTFNFISSLKA 339
Cdd:cd09128   12 REALLALIDSAEESLLIQNEEMGD--------------DAPILDALVdaaKRGVDVRVLLpSAWSAEDE-RQARLRALEG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435 340 IcteiancSLKVKFFDLEREnacatkeqKNHtfprlnrNKYMVTDG-AAYIGNFDWVGNDFTQNAGTGLVINQADVrnnr 418
Cdd:cd09128   77 A-------GVPVRLLKDKFL--------KIH-------AKGIVVDGkTALVGSENWSANSLDRNREVGLIFDDPEV---- 130

                        170
                 ....*....|....
gi 307775435 419 siIKQLKDVFERDW 432
Cdd:cd09128  131 --AAYLQAVFESDW 142
PLDc smart00155
Phospholipase D. Active site motifs; Phosphatidylcholine-hydrolyzing phospholipase D (PLD) ...
 153-178 2.28e-03

Phospholipase D. Active site motifs; Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved.


Pssm-ID: 197546 [Multi-domain]  Cd Length: 28  Bit Score: 35.44  E-value: 2.28e-03
                           10        20
                   ....*....|....*....|....*.
gi 307775435   153 NKGRLQSSFWIVDKQHVYIGSAGLDW 178
Cdd:smart00155   1 YDGVLHTKLMIVDDEIAYIGSANLDG 26
Cls COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and ...
 69-206 2.29e-03

Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase [Lipid transport and metabolism]; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 441111 [Multi-domain]  Cd Length: 367  Bit Score: 40.31  E-value: 2.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307775435  69 SLFQGWMNLLNMAKKSVDIVSSHWDLnhthpsacqGQRLFEKLLQLTSQNIEIKLVSDVTADSKV--------LEALKLK 140
Cdd:COG1502  203 TIERALLAAIASARRRIYIETPYFVP---------DRSLLRALIAAARRGVDVRILLPAKSDHPLvhwasrsyYEELLEA 273

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 307775435 141 GAEVTYmnmtaYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCScLVLDLQRIFA 206
Cdd:COG1502  274 GVRIYE-----YEPGFLHAKVMVVDDEWALVGSANLDPRSLRLNFEVNLVIYDPE-FAAQLRARFE 333
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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