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Conserved domains on  [gi|357197160|ref|NP_001239406|]
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protein arginine N-methyltransferase 1 isoform 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4076 super family cl44002
Predicted RNA methylase [General function prediction only];
45-140 1.22e-24

Predicted RNA methylase [General function prediction only];


The actual alignment was detected with superfamily member COG4076:

Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 97.80  E-value: 1.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  45 HEEMLKDEVRtltyrNSMFH---NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHV 120
Cdd:COG4076   12 HHPMLNDVER-----NDAFKaaiERVVKPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNpDIAAVARRIIAANGLSDR 86

                         90       100
                 ....*....|....*....|
gi 357197160 121 VTIIKGKVEEVELPvEKVDI 140
Cdd:COG4076   87 ITVINADATDLDLP-EKADV 105
 
Name Accession Description Interval E-value
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
45-140 1.22e-24

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 97.80  E-value: 1.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  45 HEEMLKDEVRtltyrNSMFH---NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHV 120
Cdd:COG4076   12 HHPMLNDVER-----NDAFKaaiERVVKPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNpDIAAVARRIIAANGLSDR 86

                         90       100
                 ....*....|....*....|
gi 357197160 121 VTIIKGKVEEVELPvEKVDI 140
Cdd:COG4076   87 ITVINADATDLDLP-EKADV 105
PrmA pfam06325
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal ...
 66-140 7.91e-09

Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.


Pssm-ID: 428888 [Multi-domain]  Cd Length: 294  Bit Score: 54.96  E-value: 7.91e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357197160   66 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN-KLDHVVTIIKGKVEEvELPVEKVDI 140
Cdd:pfam06325 157 RLVKPGESVLDVGCGSGILAIAALKLGAKKVVGVD---IDPVAVRAAKENaELNGVEARLEVYLPG-DLPKEKADV 228
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 74-140 1.32e-08

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 51.66  E-value: 1.32e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357197160  74 VLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVK---ANKLDHVVTIIKGKVEE-VELPVEKVDI 140
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVD---ISPVALELARkaaAALLADNVEVLKGDAEElPPEADESFDV 69
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
66-124 1.72e-07

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 50.54  E-value: 1.72e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  66 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN-KLDHVVTII 124
Cdd:PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVD---IDPQAVEAARENaELNGVELNV 171
 
Name Accession Description Interval E-value
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
45-140 1.22e-24

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 97.80  E-value: 1.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  45 HEEMLKDEVRtltyrNSMFH---NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHV 120
Cdd:COG4076   12 HHPMLNDVER-----NDAFKaaiERVVKPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNpDIAAVARRIIAANGLSDR 86

                         90       100
                 ....*....|....*....|
gi 357197160 121 VTIIKGKVEEVELPvEKVDI 140
Cdd:COG4076   87 ITVINADATDLDLP-EKADV 105
PrmA COG2264
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
66-140 7.88e-12

Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441865 [Multi-domain]  Cd Length: 284  Bit Score: 63.65  E-value: 7.88e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357197160  66 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKI----VKANKLDHVVTIIKGKVeeveLPVEKVDI 140
Cdd:COG2264  144 KLLKPGKTVLDVGCGSGILAIAAAKLGAKRVLAVD---IDPVAVEAarenAELNGVEDRIEVVLGDL----LEDGPYDL 215
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 65-140 4.51e-11

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 58.88  E-value: 4.51e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357197160  65 NRHLFKDKVVLDVGSGTGILCMFAAKAGARkVIGIEcssISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI 140
Cdd:COG2227   19 ARLLPAGGRVLDVGCGTGRLALALARRGAD-VTGVD---ISPEALEIARERAAELNVDFVQGDLEDLPLEDGSFDL 90
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
69-136 1.61e-09

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 56.07  E-value: 1.61e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  69 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN--KLDHVVTIIKGKVEEVELPVE 136
Cdd:COG2263   44 IEGKTVLDLGCGTGMLAIGAALLGAKKVVGVD---IDPEALEIARENaeRLGVRVDFIRADVTRIPLGGS 110
PrmA pfam06325
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal ...
 66-140 7.91e-09

Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.


Pssm-ID: 428888 [Multi-domain]  Cd Length: 294  Bit Score: 54.96  E-value: 7.91e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357197160   66 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN-KLDHVVTIIKGKVEEvELPVEKVDI 140
Cdd:pfam06325 157 RLVKPGESVLDVGCGSGILAIAALKLGAKKVVGVD---IDPVAVRAAKENaELNGVEARLEVYLPG-DLPKEKADV 228
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 74-140 1.25e-08

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 51.03  E-value: 1.25e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357197160   74 VLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN--KLDHVVTIIKGKVEEVELPVEKVDI 140
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGGARVTGVD---LSPEMLERARERaaEAGLNVEFVQGDAEDLPFPDGSFDL 66
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 74-140 1.32e-08

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 51.66  E-value: 1.32e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357197160  74 VLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVK---ANKLDHVVTIIKGKVEE-VELPVEKVDI 140
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVD---ISPVALELARkaaAALLADNVEVLKGDAEElPPEADESFDV 69
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
66-124 1.72e-07

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 50.54  E-value: 1.72e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  66 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEcssISDYAVKIVKAN-KLDHVVTII 124
Cdd:PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVD---IDPQAVEAARENaELNGVELNV 171
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 75-140 1.74e-06

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 45.35  E-value: 1.74e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357197160   75 LDVGSGTGILCMFAAKAGARkVIGIEcssISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI 140
Cdd:pfam08241   1 LDVGCGTGLLTELLARLGAR-VTGVD---ISPEMLELAREKAPREGLTFVVGDAEDLPFPDNSFDL 62
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 74-139 3.88e-06

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 46.68  E-value: 3.88e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  74 VLDVGSGTGILC-MFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVD 139
Cdd:COG4123   41 VLDLGTGTGVIAlMLAQRSPGARITGVEIQPEAaELARRNVALNGLEDRITVIHGDLKEFaaELPPGSFD 110
PRK14968 PRK14968
putative methyltransferase; Provisional
 70-120 3.94e-06

putative methyltransferase; Provisional


Pssm-ID: 237872 [Multi-domain]  Cd Length: 188  Bit Score: 46.05  E-value: 3.94e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 357197160  70 KDKVVLDVGSGTGILCMFAAKAGArKVIGIEcssISDYAVKIVKAN-KLDHV 120
Cdd:PRK14968  23 KGDRVLEVGTGSGIVAIVAAKNGK-KVVGVD---INPYAVECAKCNaKLNNI 70
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 70-140 5.18e-06

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 44.98  E-value: 5.18e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357197160  70 KDKVVLDVGSGTGILCMFAAKAGARkVIGIEcssISDYAVKIV--KANKLDHVVTIIKGKVEEVELPVEKVDI 140
Cdd:COG2226   22 PGARVLDLGCGTGRLALALAERGAR-VTGVD---ISPEMLELAreRAAEAGLNVEFVVGDAEDLPFPDGSFDL 90
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
29-140 1.20e-04

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 41.52  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  29 MTSKDY---YFDSYAHfgIHEEMLkdeVRTLTYRN------SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARkVIGI 99
Cdd:COG4976    1 MALDAYveaLFDQYAD--SYDAAL---VEDLGYEApallaeELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYR-LTGV 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 357197160 100 EcssISDYAVKIVKANKLDhvVTIIKGKVEEVELPVEKVDI 140
Cdd:COG4976   75 D---LSEEMLAKAREKGVY--DRLLVADLADLAEPDGRFDL 110
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 74-140 2.94e-04

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 40.67  E-value: 2.94e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357197160  74 VLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHvVTIIKGKVEE-VELPVEKVDI 140
Cdd:COG0500   30 VLDLGCGTGRNLLALAARFGGRVIGIDLSPEAiALARARAAKAGLGN-VEFLVADLAElDPLPAESFDL 97
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 68-140 3.72e-04

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 41.32  E-value: 3.72e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357197160  68 LFKDKVVLDVGSGTGILCMFAAKAgARKVIGIECS--SISDyAVKIVKANKLDHvVTIIKGKVEEV---ELPVEKVDI 140
Cdd:COG2265  231 LTGGERVLDLYCGVGTFALPLARR-AKKVIGVEIVpeAVED-ARENARLNGLKN-VEFVAGDLEEVlpeLLWGGRPDV 305
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 74-139 4.45e-04

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 39.53  E-value: 4.45e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  74 VLDVGSGTGILCMFAAKAGARKVIGIecsSIS----DYAVKIVKANKLDHVVTIIKGKVEEVELPvEKVD 139
Cdd:COG2230   55 VLDIGCGWGGLALYLARRYGVRVTGV---TLSpeqlEYARERAAEAGLADRVEVRLADYRDLPAD-GQFD 120
arsM PRK11873
arsenite methyltransferase;
73-140 1.03e-03

arsenite methyltransferase;


Pssm-ID: 237007 [Multi-domain]  Cd Length: 272  Bit Score: 39.55  E-value: 1.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357197160  73 VVLDVGSGTGILCMFAAKA-GAR-KVIGIEcssISDYAVKIVKAN--KLDHV-VTIIKGKVEEVELPVEKVDI 140
Cdd:PRK11873  80 TVLDLGSGGGFDCFLAARRvGPTgKVIGVD---MTPEMLAKARANarKAGYTnVEFRLGEIEALPVADNSVDV 149
CobL COG2242
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ...
 37-134 1.15e-03

Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441843 [Multi-domain]  Cd Length: 403  Bit Score: 39.76  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357197160  37 DSYAHFGIHeeMLKDEVRTLTYRNSmfhnrHLFKDKVVLDVGSGTG---ILCMFAAKAGarKVIGIECSSIsdyAVKIVK 113
Cdd:COG2242  221 EAFERDKGP--ITKREVRALTLAKL-----ALRPGDVLWDIGAGSGsvsIEAARLAPGG--RVYAIERDPE---RAALIR 288

                         90       100
                 ....*....|....*....|....*.
gi 357197160 114 ANKLDH-V--VTIIKGKVEEV--ELP 134
Cdd:COG2242  289 ANARRFgVpnVEVVEGEAPEAlaDLP 314
ksgA PRK14896
16S ribosomal RNA methyltransferase A;
68-134 1.98e-03

16S ribosomal RNA methyltransferase A;


Pssm-ID: 237852 [Multi-domain]  Cd Length: 258  Bit Score: 38.73  E-value: 1.98e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357197160  68 LFKDKVVLDVGSGTGILCMFAAKAgARKVIGIEC-SSISDYAVKIVKANKLdhvVTIIKGKVEEVELP 134
Cdd:PRK14896  27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELdPRLAEFLRDDEIAAGN---VEIIEGDALKVDLP 90
PRK15068 PRK15068
tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;
67-100 2.16e-03

tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;


Pssm-ID: 237898  Cd Length: 322  Bit Score: 38.69  E-value: 2.16e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 357197160  67 HLF--KDKVVLDVGSGTGILCMFAAKAGARKVIGIE 100
Cdd:PRK15068 117 HLSplKGRTVLDVGCGNGYHMWRMLGAGAKLVVGID 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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