|
Name |
Accession |
Description |
Interval |
E-value |
| JmjC |
pfam02373 |
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
1001-1109 |
4.78e-37 |
|
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. :
Pssm-ID: 396791 Cd Length: 114 Bit Score: 135.12 E-value: 4.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 1001 QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNN-------LNFLMSSWWPnlEDLYEANV 1073
Cdd:pfam02373 1 WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLSDHFggeqpddLLHLNTIISP--KQLRENGI 78
|
90 100 110
....*....|....*....|....*....|....*.
gi 384871666 1074 PVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNV 1109
Cdd:pfam02373 79 PVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
103-375 |
1.73e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only]; :
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 84.51 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 103 LEDYSKALSAYqrYYSLQADYWKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAKEIHlRLGLMFKVNTDYKS 182
Cdd:COG0457 1 LKDLLLALAIL--LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL-LLALALLKLGRLEE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 183 SLKHFQLALIdcNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLPAQVKAtvLQQLGWMHHNMDLvgdkatk 262
Cdd:COG0457 78 ALELLEKALE--LELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDY------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 263 eSYAIQYLQKSLEADP---NSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKS-EASADTWCSIGVLYQQQNQPMDALQAY 338
Cdd:COG0457 147 -EEALELYEKALELDPelnELAEALLALGALLEALGRYEEALELLEKALKLNpDDDAEALLNLGLLYLKLGKYEEALEYY 225
|
250 260 270
....*....|....*....|....*....|....*..
gi 384871666 339 ICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNA 375
Cdd:COG0457 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
|
|
| JmjC |
smart00558 |
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
967-1031 |
6.37e-08 |
|
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). :
Pssm-ID: 214721 Cd Length: 58 Bit Score: 50.33 E-value: 6.37e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384871666 967 QLHELTKLPafarvvSAGNLLTHVGHTILGMNT-VQLYMKVPGSRTPGHQENNNfcSVNINIGPGD 1031
Cdd:smart00558 1 QLWNLAKLP------FKLNLLSDLPEDIPGPDVgPYLYMGMAGSTTPWHIDDYD--LVNYLHQGAG 58
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| JmjC |
pfam02373 |
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
1001-1109 |
4.78e-37 |
|
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation.
Pssm-ID: 396791 Cd Length: 114 Bit Score: 135.12 E-value: 4.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 1001 QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNN-------LNFLMSSWWPnlEDLYEANV 1073
Cdd:pfam02373 1 WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLSDHFggeqpddLLHLNTIISP--KQLRENGI 78
|
90 100 110
....*....|....*....|....*....|....*.
gi 384871666 1074 PVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNV 1109
Cdd:pfam02373 79 PVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
103-375 |
1.73e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 84.51 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 103 LEDYSKALSAYqrYYSLQADYWKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAKEIHlRLGLMFKVNTDYKS 182
Cdd:COG0457 1 LKDLLLALAIL--LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL-LLALALLKLGRLEE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 183 SLKHFQLALIdcNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLPAQVKAtvLQQLGWMHHNMDLvgdkatk 262
Cdd:COG0457 78 ALELLEKALE--LELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDY------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 263 eSYAIQYLQKSLEADP---NSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKS-EASADTWCSIGVLYQQQNQPMDALQAY 338
Cdd:COG0457 147 -EEALELYEKALELDPelnELAEALLALGALLEALGRYEEALELLEKALKLNpDDDAEALLNLGLLYLKLGKYEEALEYY 225
|
250 260 270
....*....|....*....|....*....|....*..
gi 384871666 339 ICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNA 375
Cdd:COG0457 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
84-419 |
6.30e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 84 AEGKVESD--FFCQLGHFNLLLEDYSKALSAYQRYYSLQAdywKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFC 161
Cdd:TIGR02917 355 ALGLDPDDpaALSLLGEAYLALGDFEKAAEYLAKATELDP---ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 162 RAKEI----HLRLGLMFKVNTDYKSSLKHfqlalidcnpcTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTEnlPAQ 237
Cdd:TIGR02917 432 RADLLlilsYLRSGQFDKALAAAKKLEKK-----------QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDF 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 238 VKATVLQQlgwmhhNMDLVGDKATKesyAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADT 317
Cdd:TIGR02917 499 FPAAANLA------RIDIQEGNPDD---AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 318 WCSIGVLYQQQNQPMDALQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNAArsKRCSNTSTLAARIKFLQAq 397
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL--ALQPDSALALLLLADAYA- 646
|
330 340
....*....|....*....|..
gi 384871666 398 lcnlpqsSLQNKTKLLPSIEEA 419
Cdd:TIGR02917 647 -------VMKNYAKAITSLKRA 661
|
|
| JmjC |
smart00558 |
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
967-1031 |
6.37e-08 |
|
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Pssm-ID: 214721 Cd Length: 58 Bit Score: 50.33 E-value: 6.37e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384871666 967 QLHELTKLPafarvvSAGNLLTHVGHTILGMNT-VQLYMKVPGSRTPGHQENNNfcSVNINIGPGD 1031
Cdd:smart00558 1 QLWNLAKLP------FKLNLLSDLPEDIPGPDVgPYLYMGMAGSTTPWHIDDYD--LVNYLHQGAG 58
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
127-160 |
7.01e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 35.48 E-value: 7.01e-03
10 20 30
....*....|....*....|....*....|....
gi 384871666 127 AAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSF 160
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| JmjC |
pfam02373 |
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
1001-1109 |
4.78e-37 |
|
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation.
Pssm-ID: 396791 Cd Length: 114 Bit Score: 135.12 E-value: 4.78e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 1001 QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNN-------LNFLMSSWWPnlEDLYEANV 1073
Cdd:pfam02373 1 WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLSDHFggeqpddLLHLNTIISP--KQLRENGI 78
|
90 100 110
....*....|....*....|....*....|....*.
gi 384871666 1074 PVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNV 1109
Cdd:pfam02373 79 PVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
103-375 |
1.73e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 84.51 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 103 LEDYSKALSAYqrYYSLQADYWKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAKEIHlRLGLMFKVNTDYKS 182
Cdd:COG0457 1 LKDLLLALAIL--LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL-LLALALLKLGRLEE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 183 SLKHFQLALIdcNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLPAQVKAtvLQQLGWMHHNMDLvgdkatk 262
Cdd:COG0457 78 ALELLEKALE--LELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDY------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 263 eSYAIQYLQKSLEADP---NSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKS-EASADTWCSIGVLYQQQNQPMDALQAY 338
Cdd:COG0457 147 -EEALELYEKALELDPelnELAEALLALGALLEALGRYEEALELLEKALKLNpDDDAEALLNLGLLYLKLGKYEEALEYY 225
|
250 260 270
....*....|....*....|....*....|....*..
gi 384871666 339 ICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNA 375
Cdd:COG0457 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
44-312 |
2.91e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 83.74 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 44 EALGGMDSRLFGFVRLHEDGARTKTLLGKAVRCYESLILKAEGKVESDFFCQLGHFNLLLEDYSKALSAYQRYYSLQADY 123
Cdd:COG0457 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 124 wKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAkEIHLRLGLMFKVNtDYKSSLKHFQLALiDCNPCTLSNAE 203
Cdd:COG0457 93 -NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-EALLALGALYELG-DYEEALELYEKAL-ELDPELNELAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 204 IQFHIAHLYETQRKYHSAKEAYEQLLQtenLPAQVKATVLQQLGWMHHNMDLVGDkatkesyAIQYLQKSLEADPNSGQS 283
Cdd:COG0457 169 ALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEE-------ALEYYEKALELDPDNAEA 238
|
250 260
....*....|....*....|....*....
gi 384871666 284 WYFLGRCYSSIGKVQDAFISYRQSIDKSE 312
Cdd:COG0457 239 LYNLALLLLELGRYEEALEALEKALELDP 267
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
162-415 |
1.57e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 72.57 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 162 RAKEIHLRLGLMFKVNTDYKSSLKHFQLALIDCNPctLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLPAQVKAt 241
Cdd:COG0457 21 EALALLEAGLALLELLGELAEALELLEEALELLPN--SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 242 vlqqlgwmHHNMDLVGDKATKESYAIQYLQKSLEADPNSGQSWYFLGR-CYSSIGKVQDAFISYRQSIDKSEAS---ADT 317
Cdd:COG0457 98 --------LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALgALYELGDYEEALELYEKALELDPELnelAEA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 318 WCSIGVLYQQQNQPMDALQAYICAVQLDHGHAA-AWMDLGTLYESCNQPQDAIKCYLNAARSKRCSNTSTLAARIKFLQA 396
Cdd:COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAeALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
|
250
....*....|....*....
gi 384871666 397 QLCNLPQSSLQNKTKLLPS 415
Cdd:COG0457 250 GRYEEALEALEKALELDPD 268
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
266-369 |
9.79e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 226687 [Multi-domain] Cd Length: 287 Bit Score: 61.24 E-value: 9.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 266 AIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG-VLYQQQNQPMDAL--QAYICAV 342
Cdd:COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAeALYYQAGQQMTAKarALLRQAL 220
|
90 100
....*....|....*....|....*..
gi 384871666 343 QLDHGHAAAWMDLGTLYESCNQPQDAI 369
Cdd:COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAA 247
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
84-419 |
6.30e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 84 AEGKVESD--FFCQLGHFNLLLEDYSKALSAYQRYYSLQAdywKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSFC 161
Cdd:TIGR02917 355 ALGLDPDDpaALSLLGEAYLALGDFEKAAEYLAKATELDP---ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 162 RAKEI----HLRLGLMFKVNTDYKSSLKHfqlalidcnpcTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTEnlPAQ 237
Cdd:TIGR02917 432 RADLLlilsYLRSGQFDKALAAAKKLEKK-----------QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDF 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 238 VKATVLQQlgwmhhNMDLVGDKATKesyAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADT 317
Cdd:TIGR02917 499 FPAAANLA------RIDIQEGNPDD---AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 318 WCSIGVLYQQQNQPMDALQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNAArsKRCSNTSTLAARIKFLQAq 397
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL--ALQPDSALALLLLADAYA- 646
|
330 340
....*....|....*....|..
gi 384871666 398 lcnlpqsSLQNKTKLLPSIEEA 419
Cdd:TIGR02917 647 -------VMKNYAKAITSLKRA 661
|
|
| JmjC |
smart00558 |
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
967-1031 |
6.37e-08 |
|
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Pssm-ID: 214721 Cd Length: 58 Bit Score: 50.33 E-value: 6.37e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384871666 967 QLHELTKLPafarvvSAGNLLTHVGHTILGMNT-VQLYMKVPGSRTPGHQENNNfcSVNINIGPGD 1031
Cdd:smart00558 1 QLWNLAKLP------FKLNLLSDLPEDIPGPDVgPYLYMGMAGSTTPWHIDDYD--LVNYLHQGAG 58
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
162-372 |
2.00e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 162 RAKEIHLRLGLMFKVNTDYKSSLKHFQlALIDCNPctlSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE--NLPAQVk 239
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFK-KLLALQP---DSALALLLLADAYAVMKNYAKAITSLKRALELKpdNTEAQI- 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 240 atVLQQLgwmhhnmdLVGDKATKESYAI-QYLQKsleADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIdKSEASADTW 318
Cdd:TIGR02917 674 --GLAQL--------LLAAKRTESAKKIaKSLQK---QHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSSQNA 739
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 384871666 319 CSIGVLYQQQNQPMDALQAYIcAVQLDH-GHAAAWMDLGTLYESCNQPQDAIKCY 372
Cdd:TIGR02917 740 IKLHRALLASGNTAEAVKTLE-AWLKTHpNDAVLRTALAELYLAQKDYDKAIKHY 793
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
82-317 |
6.28e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 82 LKAEGKVESDFF-CQLGHFNLLLEDySKALSAYQRYYSLQADYWKNAAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSF 160
Cdd:TIGR02917 658 LKRALELKPDNTeAQIGLAQLLLAA-KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 161 CRAKEIHLRLGLmfkvNTDYKSSLKHFQLALIDcNPctlSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTenlpAQVKA 240
Cdd:TIGR02917 737 QNAIKLHRALLA----SGNTAEAVKTLEAWLKT-HP---NDAVLRTALAELYLAQKDYDKAIKHYQTVVKK----APDNA 804
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 384871666 241 TVLQQLGWMHHNMdlvgdkatKESYAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADT 317
Cdd:TIGR02917 805 VVLNNLAWLYLEL--------KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
105-372 |
6.39e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 105 DYSKALSAYQRYYSLQADYWkNAAFLygLGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAKE----IHLRLGLMfkvnTDY 180
Cdd:TIGR02917 276 NYEDARETLQDALKSAPEYL-PALLL--AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRllasIQLRLGRV----DEA 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 181 KSSLKHFqLALIDCNPCTLSNAEIqfhiAHLyeTQRKYHSAKEAYEQLlqTENLPAQVKATVLQQLGWMHHNmdlvgdka 260
Cdd:TIGR02917 349 IATLSPA-LGLDPDDPAALSLLGE----AYL--ALGDFEKAAEYLAKA--TELDPENAAARTQLGISKLSQG-------- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 261 tKESYAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYIC 340
Cdd:TIGR02917 412 -DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
|
250 260 270
....*....|....*....|....*....|..
gi 384871666 341 AVQLDHGHAAAWMDLGTLYESCNQPQDAIKCY 372
Cdd:TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522
|
|
| YfgC |
COG4783 |
Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; |
179-338 |
1.51e-03 |
|
Putative Zn-dependent protease, contains TPR repeats [General function prediction only];
Pssm-ID: 227122 [Multi-domain] Cd Length: 484 Bit Score: 42.77 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 179 DYKSSLKHFQlALIDCNPctlSNAEIQFHIAHLYETQRKYHSAKEAYEQLL-QTENLPAqvkatvlqqLGWMHHNMDLVG 257
Cdd:COG4783 321 QYDEALKLLQ-PLIAAQP---DNPYYLELAGDILLEANKAKEAIERLKKALaLDPNSPL---------LQLNLAQALLKG 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 258 DKATKesyAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAfisyrqsidkSEASADTWCSIGVLYQQQNQPMDALQA 337
Cdd:COG4783 388 GKPQE---AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA----------LLARAEGYALAGRLEQAIIFLMRASQQ 454
|
.
gi 384871666 338 Y 338
Cdd:COG4783 455 V 455
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
133-317 |
3.21e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.78 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 133 LGLVYFYYNAFHWAIKAFQDVLYVDPSFCRAkeiHLRLGLMFKVNTDYKSSLKHFQLALidcnpcTLSNAEIQFHI---A 209
Cdd:TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLA---YLALALYYQQLGELEKAEDSFRRAL------TLNPNNGDVLNnygT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 210 HLYEtQRKYHSAKEAYEQLLQTENLPAQVKAtvlqqlgwmHHNMDLVGDKATKESYAIQYLQKSLEADPNSGQSWYFLGR 289
Cdd:TIGR02521 108 FLCQ-QGKYEQAMQQFEQAIEDPLYPQPARS---------LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
|
170 180
....*....|....*....|....*...
gi 384871666 290 CYSSIGKVQDAFISYRQSIDKSEASADT 317
Cdd:TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAES 205
|
|
| PilF |
COG3063 |
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
266-356 |
4.95e-03 |
|
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 40.10 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384871666 266 AIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLD 345
Cdd:COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133
|
90
....*....|...
gi 384871666 346 H--GHAAAWMDLG 356
Cdd:COG3063 134 AygEPSDTLENLG 146
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
127-160 |
7.01e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 35.48 E-value: 7.01e-03
10 20 30
....*....|....*....|....*....|....
gi 384871666 127 AAFLYGLGLVYFYYNAFHWAIKAFQDVLYVDPSF 160
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
|