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Conserved domains on  [gi|442632772|ref|NP_001261936|]
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uncharacterized protein Dmel_CG13040, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02030 super family cl25717
hypothetical protein
 66-120 9.62e-05

hypothetical protein


The actual alignment was detected with superfamily member PHA02030:

Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 9.62e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 442632772  66 HVVPAVP-VIKTVAPVVPVVKHVA--PIVPVVKQVAPIVPVVKHVAPVVPVIKTVPVV 120
Cdd:PHA02030 279 AAAPAVPaAAAAVAQAAPSVPQVPnvAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQV 336
 
Name Accession Description Interval E-value
PHA02030 PHA02030
hypothetical protein
 66-120 9.62e-05

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 9.62e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 442632772  66 HVVPAVP-VIKTVAPVVPVVKHVA--PIVPVVKQVAPIVPVVKHVAPVVPVIKTVPVV 120
Cdd:PHA02030 279 AAAPAVPaAAAAVAQAAPSVPQVPnvAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQV 336
Retinin_C pfam04527
Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal ...
 40-94 1.76e-03

Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal region of the Drosophila Retinin protein. Conserved region is found towards the C-terminus of the member proteins.


Pssm-ID: 427994 [Multi-domain]  Cd Length: 63  Bit Score: 35.60  E-value: 1.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 442632772   40 HSAPLATSHQSFTQYHNQAVLTPVVKhvvpavPVIKTVAPVVPVVKHVAPIVPVV 94
Cdd:pfam04527  15 KSVPTAVSHQSSTQVHSSAVVEPVVA------PVVKTTVVSTPVVKTTYHAAPVV 63
 
Name Accession Description Interval E-value
PHA02030 PHA02030
hypothetical protein
 66-120 9.62e-05

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 9.62e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 442632772  66 HVVPAVP-VIKTVAPVVPVVKHVA--PIVPVVKQVAPIVPVVKHVAPVVPVIKTVPVV 120
Cdd:PHA02030 279 AAAPAVPaAAAAVAQAAPSVPQVPnvAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQV 336
Retinin_C pfam04527
Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal ...
 40-94 1.76e-03

Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal region of the Drosophila Retinin protein. Conserved region is found towards the C-terminus of the member proteins.


Pssm-ID: 427994 [Multi-domain]  Cd Length: 63  Bit Score: 35.60  E-value: 1.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 442632772   40 HSAPLATSHQSFTQYHNQAVLTPVVKhvvpavPVIKTVAPVVPVVKHVAPIVPVV 94
Cdd:pfam04527  15 KSVPTAVSHQSSTQVHSSAVVEPVVA------PVVKTTVVSTPVVKTTYHAAPVV 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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