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Conserved domains on  [gi|451958140|ref|NP_001263363|]
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high mobility group nucleosome-binding domain-containing protein 5 [Rattus norvegicus]

Protein Classification

high mobility group family protein( domain architecture ID 10471271)

high mobility group (HMG) family protein similar to human non-histone chromosomal protein HMG-14, also called high mobility group nucleosome-binding domain-containing protein 1, that binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
2-96 2.16e-12

HMG14 and HMG17;


:

Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 62.41  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140    2 PKRKAA---GDASQEPKRRSARLSAMPVPFTPELKPKRASTSRKTKTTNVVEESKDAGATTIPETKPEvvkgecnmENAE 78
Cdd:pfam01101   1 PKRKASsdkGKVKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGD--------NPAE 72

                          90
                  ....*....|....*...
gi 451958140   79 NGEAKIIEAPISKMETEE 96
Cdd:pfam01101  73 NGEAKTEESPKSEGAGEK 90
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-400 3.40e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 52.69  E-value: 3.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   218 EGDDGKCKVEENKEGRKESQHEEEGKEElheedGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEGK 297
Cdd:TIGR00927  724 EGTEDEGEIETGEEGEEVEDEGEGEAEG-----KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   298 EDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEE---DGKKKADGNEDRKEEEeqeaategnD 374
Cdd:TIGR00927  799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGSDGGDSEEEEE---------E 869

                          170       180
                   ....*....|....*....|....*.
gi 451958140   375 ENKVEVEEEADNKDFKEDGEKGEPVS 400
Cdd:TIGR00927  870 EEEEEEEEEEEEEEEEEEEENEEPLS 895
 
Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
2-96 2.16e-12

HMG14 and HMG17;


Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 62.41  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140    2 PKRKAA---GDASQEPKRRSARLSAMPVPFTPELKPKRASTSRKTKTTNVVEESKDAGATTIPETKPEvvkgecnmENAE 78
Cdd:pfam01101   1 PKRKASsdkGKVKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGD--------NPAE 72

                          90
                  ....*....|....*...
gi 451958140   79 NGEAKIIEAPISKMETEE 96
Cdd:pfam01101  73 NGEAKTEESPKSEGAGEK 90
HMG17 smart00527
domain in high mobilty group proteins HMG14 and HMG 17;
2-93 1.27e-09

domain in high mobilty group proteins HMG14 and HMG 17;


Pssm-ID: 197773 [Multi-domain]  Cd Length: 88  Bit Score: 54.57  E-value: 1.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140     2 PKRKAA---GDASQEPKRRSARLSAMPVPFTPELKPKRAstSRKTKTTNVVEESKDagATTIPETKPEVVKGEcnmENAE 78
Cdd:smart00527   1 PKRKVAageGDDKDEPKRRSARLSAKPAPPKPEPKPKKA--AAKKKSENVAAKGKK--GAKGKQTEEAGKEEN---NPAE 73

                           90
                   ....*....|....*
gi 451958140    79 NGEAKIIEAPISKME 93
Cdd:smart00527  74 NGETKSEEAPAAEGA 88
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-400 3.40e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 52.69  E-value: 3.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   218 EGDDGKCKVEENKEGRKESQHEEEGKEElheedGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEGK 297
Cdd:TIGR00927  724 EGTEDEGEIETGEEGEEVEDEGEGEAEG-----KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   298 EDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEE---DGKKKADGNEDRKEEEeqeaategnD 374
Cdd:TIGR00927  799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGSDGGDSEEEEE---------E 869

                          170       180
                   ....*....|....*....|....*.
gi 451958140   375 ENKVEVEEEADNKDFKEDGEKGEPVS 400
Cdd:TIGR00927  870 EEEEEEEEEEEEEEEEEEEENEEPLS 895
COG5406 COG5406
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ...
 285-353 1.75e-03

Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];


Pssm-ID: 227693 [Multi-domain]  Cd Length: 1001  Bit Score: 40.77  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 451958140  285 EEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEDGKKK 353
Cdd:COG5406   932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
 
Name Accession Description Interval E-value
HMG14_17 pfam01101
HMG14 and HMG17;
2-96 2.16e-12

HMG14 and HMG17;


Pssm-ID: 460064 [Multi-domain]  Cd Length: 90  Bit Score: 62.41  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140    2 PKRKAA---GDASQEPKRRSARLSAMPVPFTPELKPKRASTSRKTKTTNVVEESKDAGATTIPETKPEvvkgecnmENAE 78
Cdd:pfam01101   1 PKRKASsdkGKVKEEPKRRSARLSAKPAPPKPEPKPKKASSDKKKGTKGKKGAKGKAAAGANQEKKGD--------NPAE 72

                          90
                  ....*....|....*...
gi 451958140   79 NGEAKIIEAPISKMETEE 96
Cdd:pfam01101  73 NGEAKTEESPKSEGAGEK 90
HMG17 smart00527
domain in high mobilty group proteins HMG14 and HMG 17;
2-93 1.27e-09

domain in high mobilty group proteins HMG14 and HMG 17;


Pssm-ID: 197773 [Multi-domain]  Cd Length: 88  Bit Score: 54.57  E-value: 1.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140     2 PKRKAA---GDASQEPKRRSARLSAMPVPFTPELKPKRAstSRKTKTTNVVEESKDagATTIPETKPEVVKGEcnmENAE 78
Cdd:smart00527   1 PKRKVAageGDDKDEPKRRSARLSAKPAPPKPEPKPKKA--AAKKKSENVAAKGKK--GAKGKQTEEAGKEEN---NPAE 73

                           90
                   ....*....|....*
gi 451958140    79 NGEAKIIEAPISKME 93
Cdd:smart00527  74 NGETKSEEAPAAEGA 88
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-400 3.40e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 52.69  E-value: 3.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   218 EGDDGKCKVEENKEGRKESQHEEEGKEElheedGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEGK 297
Cdd:TIGR00927  724 EGTEDEGEIETGEEGEEVEDEGEGEAEG-----KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   298 EDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEE---DGKKKADGNEDRKEEEeqeaategnD 374
Cdd:TIGR00927  799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGSDGGDSEEEEE---------E 869

                          170       180
                   ....*....|....*....|....*.
gi 451958140   375 ENKVEVEEEADNKDFKEDGEKGEPVS 400
Cdd:TIGR00927  870 EEEEEEEEEEEEEEEEEEEENEEPLS 895
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 200-396 1.14e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 50.76  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   200 EGEAETEEEVKEQQKEETEGDDgkcKVEENKEG-----RKESQHEEEGKEELHEEDGKEDLHEEDGKEDLHEEDGKEDLH 274
Cdd:TIGR00927  654 EAEGENGEESGGEAEQEGETET---KGENESEGeipaeRKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG 730

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   275 EEEGKEDlHEEEGKEDLHEEEGKEDLHEE-EGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEdLHEEDGKEGQHEEDGKKK 353
Cdd:TIGR00927  731 EIETGEE-GEEVEDEGEGEAEGKHEVETEgDRKETEHEGETEAEGKEDEDEGEIQAGEDGE-MKGDEGAEGKVEHEGETE 808

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 451958140   354 ADGNEDRKEEEEQEAATEGNDENKVEVEEEADNKDFKEDGEKG 396
Cdd:TIGR00927  809 AGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKG 851
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-397 3.78e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.22  E-value: 3.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   218 EGDDGKCKVEENKEGRKESQHEEEGKEELHEEDGKEDLHEEDGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEGK 297
Cdd:TIGR00927  643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETE 722

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   298 EDLHEEEGK---EDLHEEEGKEDLHEEEGKEDLhEEEGKEDLHE------------EDGKEGQHEEDGKKKADGNEDRKE 362
Cdd:TIGR00927  723 AEGTEDEGEietGEEGEEVEDEGEGEAEGKHEV-ETEGDRKETEhegeteaegkedEDEGEIQAGEDGEMKGDEGAEGKV 801

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 451958140   363 EEEQEAATEGNDENKVEVEEEADNKDFKEDGEKGE 397
Cdd:TIGR00927  802 EHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE 836
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 93-335 4.13e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.22  E-value: 4.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140    93 ETEEVKEQINEDTEGDGGEKKEAVVTKGKND---ELEANIQDVEKDEDEKEHEDTGEEGEDGEREGGLKEKPDvAEIEDA 169
Cdd:TIGR00927  650 ERPTEAEGENGEESGGEAEQEGETETKGENEsegEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETE-AEGTED 728

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   170 KEAKDDEEKEDKEKEDDKGGDGKKEEEKDDEGEAETEEEVKEQQKEETEGDDGKCKVEENKEGRKESQHEEEGKEELHEE 249
Cdd:TIGR00927  729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETE 808

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   250 DGKEDLHEEDGKEDLHEEDGKEdlheEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHE 329
Cdd:TIGR00927  809 AGEKDEHEGQSETQADDTEVKD----ETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884


                   ....*.
gi 451958140   330 EEGKED 335
Cdd:TIGR00927  885 EEEEEN 890
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 252-394 1.20e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 1.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   252 KEDLHEEDGKEDLHEEDGK-----EDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKED 326
Cdd:TIGR00927  632 KGDVAEAEHTGERTGEEGErpteaEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 451958140   327 LHE---EEGKEDLHEEDGKEGQHEEDGKKKADGNEdrkeeeeqeaateGNDENKVEVEEEADNKDFKEDGE 394
Cdd:TIGR00927  712 AEEvehEGETEAEGTEDEGEIETGEEGEEVEDEGE-------------GEAEGKHEVETEGDRKETEHEGE 769
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 200-397 1.37e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 1.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   200 EGEAETEEEVKEQQKEETEGD---DGKCKVEENKEGRKESQHEEEGKEELHEEDGK---EDLHEEDGKEDLHEEDGKEDL 273
Cdd:TIGR00927  676 KGENESEGEIPAERKGEQEGEgeiEAKEADHKGETEAEEVEHEGETEAEGTEDEGEietGEEGEEVEDEGEGEAEGKHEV 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   274 HEE-EGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEDGKK 352
Cdd:TIGR00927  756 ETEgDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQ 835

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 451958140   353 K--ADGNEDRKEEEEQEAATEGNDENKVEVEEEADNKDFKEDGEKGE 397
Cdd:TIGR00927  836 ElnAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 63-330 4.71e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 4.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140    63 TKPEVVKGECNMENAENGEAKIIEAPISKMETEEVKEQINEDTEGDGGEKKEAVV---TKGKND---ELEANIQDVEKDE 136
Cdd:TIGR00927  631 SKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIpaeRKGEQEgegEIEAKEADHKGET 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   137 DEKEHEDTGEEGEDGEREGGLKEKPDVAEIEDAKEAKDDEEKEDKEKEDDKGGDGKKEEEKDDEGEAETEEEVKEQQKEE 216
Cdd:TIGR00927  711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451958140   217 TEGDDGKCKVEENKEGRKESQHEEEGKEELHEEDGKEDLHEEdGKEDLHEEDGKEDLHEEEGKEDLHEEEGKEDLHEEEg 296
Cdd:TIGR00927  791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDET-GEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE- 868

                          250       260       270
                   ....*....|....*....|....*....|....
gi 451958140   297 kedlHEEEGKEDlHEEEGKEDLHEEEGKEDLHEE 330
Cdd:TIGR00927  869 ----EEEEEEEE-EEEEEEEEEEEEENEEPLSLE 897
COG5406 COG5406
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ...
 285-353 1.75e-03

Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];


Pssm-ID: 227693 [Multi-domain]  Cd Length: 1001  Bit Score: 40.77  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 451958140  285 EEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGKEGQHEEDGKKK 353
Cdd:COG5406   932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
COG5406 COG5406
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ...
 276-342 6.40e-03

Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];


Pssm-ID: 227693 [Multi-domain]  Cd Length: 1001  Bit Score: 38.84  E-value: 6.40e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451958140  276 EEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEDGK 342
Cdd:COG5406   932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
COG5406 COG5406
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and ...
 267-333 8.02e-03

Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics];


Pssm-ID: 227693 [Multi-domain]  Cd Length: 1001  Bit Score: 38.45  E-value: 8.02e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451958140  267 EDGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGKEDLHEEEGK 333
Cdd:COG5406   932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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