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Conserved domains on  [gi|493798717|ref|NP_001264983|]
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caspase-9 isoform beta [Homo sapiens]

Protein Classification

CARD_CASP9 and CASc domain-containing protein( domain architecture ID 10169990)

CARD_CASP9 and CASc domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CARD_CASP9 cd08326
Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment ...
17-90 1.55e-36

Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


:

Pssm-ID: 176740  Cd Length: 84  Bit Score: 124.85  E-value: 1.55e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493798717  17 VEELQVDQLWDALLSRELFRPHMIEDIQRAGSgsRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 90
Cdd:cd08326   13 VEELQPKYLWDHLLSRGVFTPDMIEEIQAAGS--RRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLAELLR 84
CASc super family cl00042
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
140-264 1.18e-35

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


The actual alignment was detected with superfamily member cd00032:

Pssm-ID: 444667  Cd Length: 243  Bit Score: 127.33  E-value: 1.18e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717 140 EQKDHGFEVASTSPEDESPGSNPEPDAtpfqeglrtfdqldaISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 219
Cdd:cd00032  130 DELDLGVEVDSGADEPPDVETEAEDDA---------------VQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQ 194
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493798717 220 IFEQWAHSEDLQSLLLRVANAVSVK----GIYKQMPGCFNFLRKKLFFK 264
Cdd:cd00032  195 VLRKYAHSLDLLDILTKVNRKVAEKfesvNGKKQMPCFRSTLTKKLYFF 243
 
Name Accession Description Interval E-value
CARD_CASP9 cd08326
Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment ...
17-90 1.55e-36

Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 176740  Cd Length: 84  Bit Score: 124.85  E-value: 1.55e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493798717  17 VEELQVDQLWDALLSRELFRPHMIEDIQRAGSgsRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 90
Cdd:cd08326   13 VEELQPKYLWDHLLSRGVFTPDMIEEIQAAGS--RRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLAELLR 84
CASc cd00032
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
140-264 1.18e-35

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


Pssm-ID: 237997  Cd Length: 243  Bit Score: 127.33  E-value: 1.18e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717 140 EQKDHGFEVASTSPEDESPGSNPEPDAtpfqeglrtfdqldaISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 219
Cdd:cd00032  130 DELDLGVEVDSGADEPPDVETEAEDDA---------------VQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQ 194
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493798717 220 IFEQWAHSEDLQSLLLRVANAVSVK----GIYKQMPGCFNFLRKKLFFK 264
Cdd:cd00032  195 VLRKYAHSLDLLDILTKVNRKVAEKfesvNGKKQMPCFRSTLTKKLYFF 243
CASc smart00115
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that ...
140-263 4.42e-32

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.


Pssm-ID: 214521  Cd Length: 241  Bit Score: 118.11  E-value: 4.42e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717   140 EQKDHGFEVASTSPEDESPGsnpepdatpfqeglrtfdQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 219
Cdd:smart00115 129 DELDGGVPVEDSVADPESEG------------------EDDAIYKIPVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQ 190
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 493798717   220 IFEQWAHSEDLQSLLLRVANAVSVKGIY----KQMPGCFNF-LRKKLFF 263
Cdd:smart00115 191 VLKEYARSLDLLDILTEVNRKVADKFESvnakKQMPTIESMtLTKKLYF 239
Peptidase_C14 pfam00656
Caspase domain;
180-262 1.12e-22

Caspase domain;


Pssm-ID: 425803  Cd Length: 213  Bit Score: 92.39  E-value: 1.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717  180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMPGCF-NFLR 258
Cdd:pfam00656 130 NLEDGGVVEADFLVAYSTAPGQVSWRNTGSGSWFIQALCQVLREYGHGLDLLSLLTKVRRRVAEATGKKQMPCLSsSTLT 209

                  ....
gi 493798717  259 KKLF 262
Cdd:pfam00656 210 KKFY 213
CARD smart00114
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. ...
1-91 3.03e-19

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.


Pssm-ID: 128424  Cd Length: 88  Bit Score: 79.69  E-value: 3.03e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717     1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDqaRQLIIDLETRGSQALPLFISCLEDT 80
Cdd:smart00114   1 MAERDKRLLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATTKLRDK--RELVDSLQKRGSQAFDTFLDSLQET 78
                           90
                   ....*....|.
gi 493798717    81 gQDMLASFLRT 91
Cdd:smart00114  79 -DQKLADFLEL 88
CARD pfam00619
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. ...
17-89 2.48e-12

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (pfam00531) domain-like fold.


Pssm-ID: 459874 [Multi-domain]  Cd Length: 85  Bit Score: 61.04  E-value: 2.48e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493798717   17 VEELQ-VDQLWDALLSRELFRPHMIEDIQRagSGSRRDQARQLIIDLETRGSQALPLFISCLEDtGQDMLASFL 89
Cdd:pfam00619  12 VERLGtLDGLLDYLLEKNVLTEEEEEKIKA--NPTRLDKARELLDLVLKKGPKACQIFLEALKE-GDPDLASDL 82
 
Name Accession Description Interval E-value
CARD_CASP9 cd08326
Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment ...
17-90 1.55e-36

Caspase activation and recruitment domain of Caspase-9; Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 176740  Cd Length: 84  Bit Score: 124.85  E-value: 1.55e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493798717  17 VEELQVDQLWDALLSRELFRPHMIEDIQRAGSgsRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 90
Cdd:cd08326   13 VEELQPKYLWDHLLSRGVFTPDMIEEIQAAGS--RRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLAELLR 84
CASc cd00032
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
140-264 1.18e-35

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


Pssm-ID: 237997  Cd Length: 243  Bit Score: 127.33  E-value: 1.18e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717 140 EQKDHGFEVASTSPEDESPGSNPEPDAtpfqeglrtfdqldaISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 219
Cdd:cd00032  130 DELDLGVEVDSGADEPPDVETEAEDDA---------------VQTIPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQ 194
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493798717 220 IFEQWAHSEDLQSLLLRVANAVSVK----GIYKQMPGCFNFLRKKLFFK 264
Cdd:cd00032  195 VLRKYAHSLDLLDILTKVNRKVAEKfesvNGKKQMPCFRSTLTKKLYFF 243
CASc smart00115
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that ...
140-263 4.42e-32

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.


Pssm-ID: 214521  Cd Length: 241  Bit Score: 118.11  E-value: 4.42e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717   140 EQKDHGFEVASTSPEDESPGsnpepdatpfqeglrtfdQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 219
Cdd:smart00115 129 DELDGGVPVEDSVADPESEG------------------EDDAIYKIPVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQ 190
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 493798717   220 IFEQWAHSEDLQSLLLRVANAVSVKGIY----KQMPGCFNF-LRKKLFF 263
Cdd:smart00115 191 VLKEYARSLDLLDILTEVNRKVADKFESvnakKQMPTIESMtLTKKLYF 239
Peptidase_C14 pfam00656
Caspase domain;
180-262 1.12e-22

Caspase domain;


Pssm-ID: 425803  Cd Length: 213  Bit Score: 92.39  E-value: 1.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717  180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMPGCF-NFLR 258
Cdd:pfam00656 130 NLEDGGVVEADFLVAYSTAPGQVSWRNTGSGSWFIQALCQVLREYGHGLDLLSLLTKVRRRVAEATGKKQMPCLSsSTLT 209

                  ....
gi 493798717  259 KKLF 262
Cdd:pfam00656 210 KKFY 213
CARD smart00114
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. ...
1-91 3.03e-19

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.


Pssm-ID: 128424  Cd Length: 88  Bit Score: 79.69  E-value: 3.03e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798717     1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDqaRQLIIDLETRGSQALPLFISCLEDT 80
Cdd:smart00114   1 MAERDKRLLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATTKLRDK--RELVDSLQKRGSQAFDTFLDSLQET 78
                           90
                   ....*....|.
gi 493798717    81 gQDMLASFLRT 91
Cdd:smart00114  79 -DQKLADFLEL 88
DD cd08304
Death Domain Superfamily of protein-protein interaction domains; The Death Domain (DD) ...
21-89 5.47e-17

Death Domain Superfamily of protein-protein interaction domains; The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.


Pssm-ID: 176720  Cd Length: 69  Bit Score: 73.36  E-value: 5.47e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493798717  21 QVDQLWDALLSRelFRPHMIEDIqragsgsrrDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 89
Cdd:cd08304   12 VLQQLKTALKSR--IPPDQVEQI---------SAANELLNILESQYNHTLQLLFALFEDLGLHNLARLL 69
CARD cd01671
Caspase activation and recruitment domain: a protein-protein interaction domain; Caspase ...
17-89 4.50e-15

Caspase activation and recruitment domain: a protein-protein interaction domain; Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form multiprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260018 [Multi-domain]  Cd Length: 79  Bit Score: 68.31  E-value: 4.50e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493798717  17 VEELQVDQLWDALLSRELFRPHMIEDIQRAGSgsRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 89
Cdd:cd01671    9 VEDLDVEDILDHLIQKGVLTEEDKEEILSEKT--RQDKARKLLDILPRRGPKAFEVFCEALRETGQPHLAELL 79
CARD pfam00619
Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. ...
17-89 2.48e-12

Caspase recruitment domain; Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (pfam00531) domain-like fold.


Pssm-ID: 459874 [Multi-domain]  Cd Length: 85  Bit Score: 61.04  E-value: 2.48e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493798717   17 VEELQ-VDQLWDALLSRELFRPHMIEDIQRagSGSRRDQARQLIIDLETRGSQALPLFISCLEDtGQDMLASFL 89
Cdd:pfam00619  12 VERLGtLDGLLDYLLEKNVLTEEEEEKIKA--NPTRLDKARELLDLVLKKGPKACQIFLEALKE-GDPDLASDL 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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