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Conserved domains on  [gi|594346510|ref|NP_001277481|]
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DNA repair protein SWI5 homolog isoform a [Mus musculus]

Protein Classification

SWI5/SAE3 family protein( domain architecture ID 10537184)

SWI5/SAE3 family protein similar to Homo sapiens DNA repair protein SWI5 and Saccharomyces cerevisiae pachytene arrest protein SAE3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 45-120 1.15e-26

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


:

Pssm-ID: 462077  Cd Length: 79  Bit Score: 94.16  E-value: 1.15e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 594346510   45 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 120
Cdd:pfam07061   1 LQAEIAELEAQLEELEKELAELSAELKepdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVDMN 79
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 45-120 1.15e-26

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 462077  Cd Length: 79  Bit Score: 94.16  E-value: 1.15e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 594346510   45 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 120
Cdd:pfam07061   1 LQAEIAELEAQLEELEKELAELSAELKepdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVDMN 79
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 45-120 1.15e-26

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 462077  Cd Length: 79  Bit Score: 94.16  E-value: 1.15e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 594346510   45 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 120
Cdd:pfam07061   1 LQAEIAELEAQLEELEKELAELSAELKepdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVDMN 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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