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Conserved domains on  [gi|663071033|ref|NP_001284585|]
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kinesin-like protein KIF2C isoform 3 [Homo sapiens]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
204-532 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 283
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 363
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 441
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 442 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 521
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 663071033 522 LNTLRYADRVK 532
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
204-532 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 283
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 363
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 441
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 442 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 521
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 663071033 522 LNTLRYADRVK 532
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
210-533 1.02e-136

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 403.49  E-value: 1.02e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  210 RKRPLNKQELAKKEIDVISipskCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 289
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVS----VESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  290 CFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQpCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKL 365
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  366 RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------MHGKFSLV 437
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  438 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISPGIS 516
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 663071033  517 SCEYTLNTLRYADRVKE 533
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
204-534 9.10e-122

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 365.74  E-value: 9.10e-122
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   204 RICVCVRKRPLNKQELAKKEIDVISIPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 280
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   281 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVF-LLKNQPcyRKLGLEVYVTFFEIYNGKLFDLL 359
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFeKIDKRE--EGWQFSVKVSYLEIYNEKIRDLL 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   360 NK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------H 431
Cdd:smart00129 146 NPsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNsssgsgkA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   432 GKFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIA 509
Cdd:smart00129 226 SKLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIA 303
                          330       340
                   ....*....|....*....|....*
gi 663071033   510 TISPGISSCEYTLNTLRYADRVKEL 534
Cdd:smart00129 304 NVSPSSSNLEETLSTLRFASRAKEI 328
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
207-633 1.69e-61

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 214.99  E-value: 1.69e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQELAKKEIDVISIPSK--CLLLVHEPKLKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFE 284
Cdd:COG5059    9 LKSRLSSRNEKSVSDIKSTIRIIPGElgERLINTSKKSHVSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFlLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL-NKKA 363
Cdd:COG5059   88 GYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVD 438
Cdd:COG5059  161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 439 LAGNERGADTssADRQTRM-EGAEINKSLLALKECIRALGQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 515
Cdd:COG5059  241 LAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 516 SSCEYTLNTLRYADRVKELSPHSGPSGEQLIQMETEEMEACSNGALIPGNLSKEEEELSSQMSSFNE--AMTQIRELEEK 593
Cdd:COG5059  318 NSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGifAYMQSLKKETE 397
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 663071033 594 AMEE-----LKEIIQQGPDWLELSEMTEQpdyDLETFVNKAESAL 633
Cdd:COG5059  398 TLKSridliMKSIISGTFERKKLLKEEGW---KYKSTLQFLRIEI 439
PLN03188 PLN03188
kinesin-12 family protein; Provisional
207-532 7.23e-36

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.46  E-value: 7.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  207 VCVRKRPLNKQELAKKEIDVISIPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 286
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  287 KATCFAYGQTGSGKTHTMGG--------DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 358
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGpanglleeHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  359 LNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHG--- 432
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  433 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 503
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 663071033  504 RTCMIATISPGISSCEYTLNTLRYADRVK 532
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
204-532 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 605.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 283
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDLSGkaQNASKGIYAMASRDVFLLKNQPCYrKLGLEVYVTFFEIYNGKLFDLLNKKA 363
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR--AKGRMHGKFSLVDLAG 441
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 442 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYT 521
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 663071033 522 LNTLRYADRVK 532
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
210-533 1.02e-136

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 403.49  E-value: 1.02e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  210 RKRPLNKQELAKKEIDVISipskCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 289
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVS----VESVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  290 CFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQpCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKL 365
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  366 RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------MHGKFSLV 437
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  438 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISPGIS 516
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 663071033  517 SCEYTLNTLRYADRVKE 533
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
204-532 8.85e-126

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 375.44  E-value: 8.85e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQElAKKEIDVISIPSKCLLLVHEPKlkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 283
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPK-----NRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDLSGkaqnaSKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN--K 361
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPDPE-----QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 362 KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------HGKF 434
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 435 SLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIATISP 513
Cdd:cd00106  230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQNkHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 663071033 514 GISSCEYTLNTLRYADRVK 532
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
204-534 9.10e-122

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 365.74  E-value: 9.10e-122
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   204 RICVCVRKRPLNKQELAKKEIDVISIPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 280
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   281 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVF-LLKNQPcyRKLGLEVYVTFFEIYNGKLFDLL 359
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFeKIDKRE--EGWQFSVKVSYLEIYNEKIRDLL 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   360 NK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM-------H 431
Cdd:smart00129 146 NPsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNsssgsgkA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033   432 GKFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIA 509
Cdd:smart00129 226 SKLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIA 303
                          330       340
                   ....*....|....*....|....*
gi 663071033   510 TISPGISSCEYTLNTLRYADRVKEL 534
Cdd:smart00129 304 NVSPSSSNLEETLSTLRFASRAKEI 328
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
204-534 1.91e-91

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 287.70  E-value: 1.91e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKcLLLVHEPKLKVDLTKYLEN------------QAFCFDFAFDETASNEVVY 271
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDN-HMLVFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 272 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGkaqnasKGIYAMASRDVF----LLKNQPCYrklglEVYVTF 347
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQE------PGLMVLTMKELFkrieSLKDEKEF-----EVSMSY 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 348 FEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA 426
Cdd:cd01370  149 LEIYNETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQ 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 427 KGR--------MHGKFSLVDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNK---AHTPFRESKLTQVL 494
Cdd:cd01370  229 QDKtasinqqvRQGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALADPGkknKHIPYRDSKLTRLL 306
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 663071033 495 RDSfIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 534
Cdd:cd01370  307 KDS-LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
205-534 1.64e-80

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 258.42  E-value: 1.64e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 205 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 284
Cdd:cd01374    2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPP-----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRKLGLEvyVTFFEIYNGKLFDLLN-KKA 363
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGD------EDEPGIIPLAIRDIFSKIQDTPDREFLLR--VSYLEIYNEKINDLLSpTSQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHGK------FS 435
Cdd:cd01374  143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGtvrvstLN 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 436 LVDLAGNERGADT-SSADRqtRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIATIS 512
Cdd:cd01374  223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                        330       340
                 ....*....|....*....|..
gi 663071033 513 PGISSCEYTLNTLRYADRVKEL 534
Cdd:cd01374  300 PAESHVEETLNTLKFASRAKKI 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
204-532 2.97e-80

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 258.82  E-value: 2.97e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAF------DET-ASNEVVYRFTA 275
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYwshdseDPNyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 276 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKL 355
Cdd:cd01365   82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 356 FDLLNKKAK-----LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--- 427
Cdd:cd01365  156 RDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrhd 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 428 ------GRMHGKFSLVDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT--------PFRESKLTQV 493
Cdd:cd01365  236 aetnltTEKVSKISLVDLAGSER-ASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssfiPYRDSVLTWL 314
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 663071033 494 LRDSfIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 532
Cdd:cd01365  315 LKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
207-530 3.03e-78

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 253.02  E-value: 3.03e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQELAKKEIDVISIPSKclllvhEPKLKVDltkylENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 286
Cdd:cd01372    5 VAVRVRPLLPKEIIEGCRICVSFVPG------EPQVTVG-----TDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 287 KATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVF----LLKNQPCYrklglEVYVTFFEIYNGKLFDLLN-- 360
Cdd:cd01372   74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkkieKKKDTFEF-----QLKVSFLEIYNEEIRDLLDpe 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 361 --KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------- 429
Cdd:cd01372  149 tdKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsa 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 430 ------MHGKFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALG---QNKAHTPFRESKLTQVLRDSfIG 500
Cdd:cd01372  229 ddknstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LG 306
                        330       340       350
                 ....*....|....*....|....*....|
gi 663071033 501 ENSRTCMIATISPGISSCEYTLNTLRYADR 530
Cdd:cd01372  307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
207-532 5.37e-72

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 236.20  E-value: 5.37e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKV-DLTKylenqAFCFDFAFDETASNEVVYRFTARPLVQTIFE 284
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATAnEPPK-----TFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGDlsgKAQNASKGIYAMASRDVF--LLKNQPCYRKLgleVYVTFFEIYNGKLFDLLNK- 361
Cdd:cd01371   80 GYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFghIARSQNNQQFL---VRVSYLEIYNEEIRDLLGKd 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 362 -KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA-----KGRMH---G 432
Cdd:cd01371  154 qTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvG 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 433 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSfIGENSRTCMIATI 511
Cdd:cd01371  234 KLNLVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKStHIPYRDSKLTRLLQDS-LGGNSKTVMCANI 311
                        330       340
                 ....*....|....*....|.
gi 663071033 512 SPGISSCEYTLNTLRYADRVK 532
Cdd:cd01371  312 GPADYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
205-532 3.68e-71

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 234.03  E-value: 3.68e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 205 ICVCVRKRPLNKQELAKkEIDVISIPSkclllvhEPKLKVDLT-KYLENQAFCFDFAFDETASNEVVYRfTARPLVQTIF 283
Cdd:cd01366    4 IRVFCRVRPLLPSEENE-DTSHITFPD-------EDGQTIELTsIGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA 363
Cdd:cd01366   75 DGYNVCIFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGN 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 ----KLRVLEDG-KQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----RMHGK 433
Cdd:cd01366  149 apqkKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNlqtgeISVGK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 434 FSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIATISP 513
Cdd:cd01366  229 LNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 306
                        330
                 ....*....|....*....
gi 663071033 514 GISSCEYTLNTLRYADRVK 532
Cdd:cd01366  307 AESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
202-532 4.06e-69

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 229.52  E-value: 4.06e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 202 EHRICVCVRKRPLNKQELAKKEIDVISI--PSKCLLLVHEPKLKVDLTKylenqAFCFDFAFDETASNEVVYRFTARPLV 279
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 280 QTIFEGGKATCFAYGQTGSGKTHTMGGDLS-----GKAQNASKGIYAMASRDVFllknqPCYRKLGLE--VYVTFFEIYN 352
Cdd:cd01364   76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSpneeyTWELDPLAGIIPRTLHQLF-----EKLEDNGTEysVKVSYLEIYN 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 353 GKLFDLL----NKKAKLRVLED--GKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA 426
Cdd:cd01364  151 EELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 427 KGRMH--------GKFSLVDLAGNErGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSf 498
Cdd:cd01364  231 KETTIdgeelvkiGKLNLVDLAGSE-NIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDS- 308
                        330       340       350
                 ....*....|....*....|....*....|....
gi 663071033 499 IGENSRTCMIATISPGISSCEYTLNTLRYADRVK 532
Cdd:cd01364  309 LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
205-532 4.70e-68

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 225.67  E-value: 4.70e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 205 ICVCVRKRPLNKQELAKKEIDVISIPskclllvhePKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 284
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFD---------PEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGdlsGKAQNASKGIYAMASRDVF--LLKNQpcyRKLGLEVYVTFFEIYNGKLFDLLN-K 361
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFetIYSMD---ENLEFHVKVSYFEIYMEKIRDLLDvS 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 362 KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR-----MHGKFSL 436
Cdd:cd01369  149 KTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVetekkKSGKLYL 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 437 VDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 515
Cdd:cd01369  229 VDLAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTDgKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSS 306
                        330
                 ....*....|....*..
gi 663071033 516 SSCEYTLNTLRYADRVK 532
Cdd:cd01369  307 YNESETLSTLRFGQRAK 323
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
207-633 1.69e-61

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 214.99  E-value: 1.69e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQELAKKEIDVISIPSK--CLLLVHEPKLKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFE 284
Cdd:COG5059    9 LKSRLSSRNEKSVSDIKSTIRIIPGElgERLINTSKKSHVSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGDLSgkaqnaSKGIYAMASRDVFlLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL-NKKA 363
Cdd:COG5059   88 GYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 364 KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFSLVD 438
Cdd:COG5059  161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 439 LAGNERGADTssADRQTRM-EGAEINKSLLALKECIRALGQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 515
Cdd:COG5059  241 LAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 516 SSCEYTLNTLRYADRVKELSPHSGPSGEQLIQMETEEMEACSNGALIPGNLSKEEEELSSQMSSFNE--AMTQIRELEEK 593
Cdd:COG5059  318 NSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGifAYMQSLKKETE 397
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 663071033 594 AMEE-----LKEIIQQGPDWLELSEMTEQpdyDLETFVNKAESAL 633
Cdd:COG5059  398 TLKSridliMKSIISGTFERKKLLKEEGW---KYKSTLQFLRIEI 439
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
209-532 1.13e-58

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 200.88  E-value: 1.13e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 209 VRKRPLNKQELAKKEIDvisiPSKCLLLVHEPKlkvDLTK-YLENQAFCFDFAFD---ETASNEVVYRFTARPLVQTIFE 284
Cdd:cd01375    6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQQEDWSFKFDgvlHNASQELVYETVAKDVVSSALA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 285 GGKATCFAYGQTGSGKTHTMGGdlsGKAQNASKGIYAMASRDVF-LLKNQPCYrklGLEVYVTFFEIYNGKLFDLLNKK- 362
Cdd:cd01375   79 GYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFrMIEERPTK---AYTVHVSYLEIYNEQLYDLLSTLp 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 363 ------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR------- 429
Cdd:cd01375  153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 430 MHGKFSLVDLAGNERGADTSSADrQTRMEGAEINKSLLALKECIRALG-QNKAHTPFRESKLTQVLRDSfIGENSRTCMI 508
Cdd:cd01375  233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSdKDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                        330       340
                 ....*....|....*....|....
gi 663071033 509 ATISPGISSCEYTLNTLRYADRVK 532
Cdd:cd01375  311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
207-528 1.00e-54

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 190.68  E-value: 1.00e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPK-----LKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQT 281
Cdd:cd01368    5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKgsaanKSERNGGQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 282 IFEGGKATCFAYGQTGSGKTHTMGGDLSGkaqnasKGIYAMaSRDVfLLKNQPCYrklglEVYVTFFEIYNGKLFDLLN- 360
Cdd:cd01368   84 LLHGKNGLLFTYGVTNSGKTYTMQGSPGD------GGILPR-SLDV-IFNSIGGY-----SVFVSYIEIYNEYIYDLLEp 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 361 -------KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQI-ILRAKGRMHG 432
Cdd:cd01368  151 spssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSDG 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 433 ------------KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQN-----KAHTPFRESKLTQVLR 495
Cdd:cd01368  231 dvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLFQ 309
                        330       340       350
                 ....*....|....*....|....*....|...
gi 663071033 496 DSFIGEnSRTCMIATISPGISSCEYTLNTLRYA 528
Cdd:cd01368  310 NYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
204-532 2.12e-54

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 188.87  E-value: 2.12e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 204 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPklkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 283
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 284 EGGKATCFAYGQTGSGKTHTMGGDlsgkaqNASKGIYAMASRDVFLLKNQPCYRklgLEVYVTFFEIYNGKLFDLLN-KK 362
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGS------PEQPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEpAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 363 AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM------HGKFSL 436
Cdd:cd01376  146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 437 VDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSfIGENSRTCMIATISPGI 515
Cdd:cd01376  226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                        330
                 ....*....|....*..
gi 663071033 516 SSCEYTLNTLRYADRVK 532
Cdd:cd01376  303 TFYQDTLSTLNFAARSR 319
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
203-532 6.62e-54

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 188.49  E-value: 6.62e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 203 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVdltkylenqaFCFDFAFDETASNEVVYRFTARPLVQTI 282
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKT----------FTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 283 FEGGKATCFAYGQTGSGKTHTMGGDlSGKAQNASKGIYAMASRD----VFLLKNQPCYRKLGLEVYV--TFFEIYNGKLF 356
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPRIfeylFSLIQREKEKAGEGKSFLCkcSFLEIYNEQIY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 357 DLLNK-KAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG--- 432
Cdd:cd01373  150 DLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfvn 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 433 ----KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN----KAHTPFRESKLTQVLRDSfIGENSR 504
Cdd:cd01373  230 irtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALVDVahgkQRHVCYRDSKLTFLLRDS-LGGNAK 307
                        330       340
                 ....*....|....*....|....*...
gi 663071033 505 TCMIATISPGISSCEYTLNTLRYADRVK 532
Cdd:cd01373  308 TAIIANVHPSSKCFGETLSTLRFAQRAK 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
207-532 7.23e-36

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 145.46  E-value: 7.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  207 VCVRKRPLNKQELAKKEIDVISIPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 286
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  287 KATCFAYGQTGSGKTHTMGG--------DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 358
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGpanglleeHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  359 LNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL--RAKGRMHG--- 432
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  433 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 503
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 663071033  504 RTCMIATISPGISSCEYTLNTLRYADRVK 532
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
207-513 4.37e-11

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 61.98  E-value: 4.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 207 VCVRKRPLNKQElakkeidvISIPSKCLLlvhepklkvdltkylenqafcFDFAFDETASNEVVYRfTARPLVQTIFEGG 286
Cdd:cd01363    1 VLVRVNPFKELP--------IYRDSKIIV---------------------FYRGFRRSESQPHVFA-IADPAYQSMLDGY 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 287 KATC-FAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMasrdvfllknqpcyrKLGLEVYVTffeiyngklfdllnkkakl 365
Cdd:cd01363   51 NNQSiFAYGESGAGKTETMKGVIPYLASVAFNGINKG---------------ETEGWVYLT------------------- 96
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033 366 rvledgkqqvqvvglqEHLVNSADDVIKMIDMGSACRTSgQTFANSNSSRSHACFQIilrakgrmhgkfsLVDLAGNERg 445
Cdd:cd01363   97 ----------------EITVTLEDQILQANPILEAFGNA-KTTRNENSSRFGKFIEI-------------LLDIAGFEI- 145
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 663071033 446 adtssadrqtrmegaeINKSLLALKECIRAlgqnkahtpfreskltqvlrdsfigenSRTCMIATISP 513
Cdd:cd01363  146 ----------------INESLNTLMNVLRA---------------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
200-359 6.81e-08

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 51.84  E-value: 6.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  200 IEEHR--ICVCVRKRPLNKQELAkkeidvISIPSKCLLLVHEPKlkvdltkylENQAFCFDFAFDETASNEVVYRFTaRP 277
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663071033  278 LVQTIFEGGKATCFAYGQTGSGKTHTMGGdlsgkaqNASKGIYAMASRdvflLKNQPCYrklglEVYVTFFEIYNGKLFD 357
Cdd:pfam16796  79 LVQSCLDGYNVCIFAYGQTGSGSNDGMIP-------RAREQIFRFISS----LKKGWKY-----TIELQFVEIYNESSQD 142

                  ..
gi 663071033  358 LL 359
Cdd:pfam16796 143 LL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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