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Conserved domains on  [gi|666637940|ref|NP_001287993|]
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RNA polymerase I-specific transcription initiation factor RRN3 isoform 2 [Homo sapiens]

Protein Classification

RNA polymerase I-specific transcription initiation factor RRN3 family protein( domain architecture ID 10526375)

RNA polymerase I-specific transcription initiation factor RRN3 family protein similar to human RRN3 that is required for efficient transcription initiation by RNA polymerase I, and for the formation of the competent preinitiation complex (PIC).

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RRN3 pfam05327
RNA polymerase I specific transcription initiation factor RRN3; This family consists of ...
85-555 8.22e-131

RNA polymerase I specific transcription initiation factor RRN3; This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae.


:

Pssm-ID: 428424  Cd Length: 543  Bit Score: 394.69  E-value: 8.22e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940   85 RLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDdnlpanFDTCHRALQIIA 164
Cdd:pfam05327  76 SLKWLGRDEAFVKAYIRFLGVLASAHPKYLSLVLSMLVQNFTPQPLSSGRLPGPPPVDRREV------YERVHEALKYIL 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  165 RYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVnasrqGI--------EDA 236
Cdd:pfam05327 150 RLIPTAPSVLVPILSRKFPHKRDSKKAQVTYIRNLLRLTEYCPELEEDILALIIERLIKIDV-----EIqveledldDDE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  237 EETATQTCGGTDSTEGLFNMDEDEETEHETK----AGPERLdQMVHPVAERLDILMSLVLSYMKDVcYVDGKVDNGKTKD 312
Cdd:pfam05327 225 DEELLEQLEDDDDDDDDSDDDSDSSDEIIDDdeedDEVQRI-KKIKELVDKLDAILDLLFEHLDSS-SGSEELNEGEGVE 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITV 392
Cdd:pfam05327 303 IFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELSDSFLGTLIDIAFDPNEPAIKRQAAAAYLASFVARAKFVSRSQV 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  393 KSCLDLLVNWLHIYLNNQDSGTKAfCDVALHGPFYSACQAVFYTFVFRHKQLL---SGNLKEGLQYLQSLN--FERIVMS 467
Cdd:pfam05327 383 RFVLSYLCDWLNRYVDEREEECRG-PDLKRHGVFYAVCQALLYIFCFRWRDLTdrvDDEEGGDLTWLPGLDefLQRAIYS 461
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  468 QLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRqmlpviRSTAGGDSVQIcTNPLDTFFPFDPCVLKRSKKFIDPI 547
Cdd:pfam05327 462 KLNPLKVCSPNVVREFARIAHHLQFLYCFSIIESNKR------EETAGTKQGEE-FEQLDAYFPFDPYLLPRSKRWIEPD 534

                  ....*...
gi 666637940  548 YQVWEDMS 555
Cdd:pfam05327 535 YVEWSEVA 542
 
Name Accession Description Interval E-value
RRN3 pfam05327
RNA polymerase I specific transcription initiation factor RRN3; This family consists of ...
85-555 8.22e-131

RNA polymerase I specific transcription initiation factor RRN3; This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae.


Pssm-ID: 428424  Cd Length: 543  Bit Score: 394.69  E-value: 8.22e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940   85 RLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDdnlpanFDTCHRALQIIA 164
Cdd:pfam05327  76 SLKWLGRDEAFVKAYIRFLGVLASAHPKYLSLVLSMLVQNFTPQPLSSGRLPGPPPVDRREV------YERVHEALKYIL 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  165 RYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVnasrqGI--------EDA 236
Cdd:pfam05327 150 RLIPTAPSVLVPILSRKFPHKRDSKKAQVTYIRNLLRLTEYCPELEEDILALIIERLIKIDV-----EIqveledldDDE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  237 EETATQTCGGTDSTEGLFNMDEDEETEHETK----AGPERLdQMVHPVAERLDILMSLVLSYMKDVcYVDGKVDNGKTKD 312
Cdd:pfam05327 225 DEELLEQLEDDDDDDDDSDDDSDSSDEIIDDdeedDEVQRI-KKIKELVDKLDAILDLLFEHLDSS-SGSEELNEGEGVE 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITV 392
Cdd:pfam05327 303 IFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELSDSFLGTLIDIAFDPNEPAIKRQAAAAYLASFVARAKFVSRSQV 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  393 KSCLDLLVNWLHIYLNNQDSGTKAfCDVALHGPFYSACQAVFYTFVFRHKQLL---SGNLKEGLQYLQSLN--FERIVMS 467
Cdd:pfam05327 383 RFVLSYLCDWLNRYVDEREEECRG-PDLKRHGVFYAVCQALLYIFCFRWRDLTdrvDDEEGGDLTWLPGLDefLQRAIYS 461
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  468 QLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRqmlpviRSTAGGDSVQIcTNPLDTFFPFDPCVLKRSKKFIDPI 547
Cdd:pfam05327 462 KLNPLKVCSPNVVREFARIAHHLQFLYCFSIIESNKR------EETAGTKQGEE-FEQLDAYFPFDPYLLPRSKRWIEPD 534

                  ....*...
gi 666637940  548 YQVWEDMS 555
Cdd:pfam05327 535 YVEWSEVA 542
 
Name Accession Description Interval E-value
RRN3 pfam05327
RNA polymerase I specific transcription initiation factor RRN3; This family consists of ...
85-555 8.22e-131

RNA polymerase I specific transcription initiation factor RRN3; This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae.


Pssm-ID: 428424  Cd Length: 543  Bit Score: 394.69  E-value: 8.22e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940   85 RLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDdnlpanFDTCHRALQIIA 164
Cdd:pfam05327  76 SLKWLGRDEAFVKAYIRFLGVLASAHPKYLSLVLSMLVQNFTPQPLSSGRLPGPPPVDRREV------YERVHEALKYIL 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  165 RYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVnasrqGI--------EDA 236
Cdd:pfam05327 150 RLIPTAPSVLVPILSRKFPHKRDSKKAQVTYIRNLLRLTEYCPELEEDILALIIERLIKIDV-----EIqveledldDDE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  237 EETATQTCGGTDSTEGLFNMDEDEETEHETK----AGPERLdQMVHPVAERLDILMSLVLSYMKDVcYVDGKVDNGKTKD 312
Cdd:pfam05327 225 DEELLEQLEDDDDDDDDSDDDSDSSDEIIDDdeedDEVQRI-KKIKELVDKLDAILDLLFEHLDSS-SGSEELNEGEGVE 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  313 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITV 392
Cdd:pfam05327 303 IFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELSDSFLGTLIDIAFDPNEPAIKRQAAAAYLASFVARAKFVSRSQV 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  393 KSCLDLLVNWLHIYLNNQDSGTKAfCDVALHGPFYSACQAVFYTFVFRHKQLL---SGNLKEGLQYLQSLN--FERIVMS 467
Cdd:pfam05327 383 RFVLSYLCDWLNRYVDEREEECRG-PDLKRHGVFYAVCQALLYIFCFRWRDLTdrvDDEEGGDLTWLPGLDefLQRAIYS 461
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666637940  468 QLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRqmlpviRSTAGGDSVQIcTNPLDTFFPFDPCVLKRSKKFIDPI 547
Cdd:pfam05327 462 KLNPLKVCSPNVVREFARIAHHLQFLYCFSIIESNKR------EETAGTKQGEE-FEQLDAYFPFDPYLLPRSKRWIEPD 534

                  ....*...
gi 666637940  548 YQVWEDMS 555
Cdd:pfam05327 535 YVEWSEVA 542
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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