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Conserved domains on  [gi|887244235|ref|NP_001297477|]
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SOSS complex subunit B2 isoform b [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02216 super family cl33435
protein SRG1
36-71 5.06e-03

protein SRG1


The actual alignment was detected with superfamily member PLN02216:

Pssm-ID: 215129 [Multi-domain]  Cd Length: 357  Bit Score: 35.22  E-value: 5.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 887244235  36 NPDYRGQQNRGVQNEQKDKLSTNTFGPVGNGDQTGP 71
Cdd:PLN02216 281 NGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGP 316
 
Name Accession Description Interval E-value
PLN02216 PLN02216
protein SRG1
36-71 5.06e-03

protein SRG1


Pssm-ID: 215129 [Multi-domain]  Cd Length: 357  Bit Score: 35.22  E-value: 5.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 887244235  36 NPDYRGQQNRGVQNEQKDKLSTNTFGPVGNGDQTGP 71
Cdd:PLN02216 281 NGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGP 316
 
Name Accession Description Interval E-value
PLN02216 PLN02216
protein SRG1
36-71 5.06e-03

protein SRG1


Pssm-ID: 215129 [Multi-domain]  Cd Length: 357  Bit Score: 35.22  E-value: 5.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 887244235  36 NPDYRGQQNRGVQNEQKDKLSTNTFGPVGNGDQTGP 71
Cdd:PLN02216 281 NGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGP 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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