|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2942-3019 |
3.03e-27 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 106.91 E-value: 3.03e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 2942 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKAERKitSRPFTRFRTAVRVVIAILRLRFLVKKW 3019
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS--RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1320-1842 |
4.00e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 4.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1320 ILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLR-NQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQaakpqpwg 1398
Cdd:COG1196 193 DILGELERQLEPLERQAEKAERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAE-------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1399 prdsqqapLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLE 1478
Cdd:COG1196 265 --------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1479 QDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEI 1558
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1559 LHLNLKLDMQNSQTAVSLRELEEENTSLKviyTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLm 1638
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALE---EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1639 GPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQG--------ELEAALEAKEA--LSRLLADQERRHSQALEALQQRLQG 1708
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavligveaAYEAALEAALAaaLQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1709 AEEAAEL------QLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALAR 1782
Cdd:COG1196 573 RATFLPLdkirarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1783 IRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQARRATAHTR 1842
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1276-1818 |
3.91e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.84 E-value: 3.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1276 EATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLSqmkiLESELEEQLSQHRGCAKQAEAVTALEQQVASLDKH 1355
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1356 LRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQpwgpRDSQQAPLDGEVEL--LQQKLREKLDEFNELAIQKE 1433
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----EEAEAELAEAEEALleAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1434 SADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSG 1513
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1514 SPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ----NSQTAVSLRELEEENTSLKVI 1589
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavLIGVEAAYEAALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1590 YTRSSEIEELKATIENLQENQK-RLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQ 1668
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1669 ALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAK 1748
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1749 EATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVL 1818
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
151-710 |
3.47e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 3.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 151 LQKEKETAL--TELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEV------VLRCGQEAAELKEKLQSEM---- 218
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELeeleaeLAELEAELEELRLELEELElele 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 219 EKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAI 298
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 299 EKLREDLQSEHGRclEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTS 378
Cdd:COG1196 365 EALLEAEAELAEA--EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 379 RVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKD 458
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 459 HVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEGHVSDRCCVETSALGHEWRLEPSEGHSQELPWVHLQGVQ 538
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 539 DGDLEADTERA-ARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLE-KVKHNLIEDHQKELNNA 616
Cdd:COG1196 603 LVASDLREADArYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 617 KQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSL 696
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570
....*....|....
gi 937500814 697 TEQQGRLQQLEQDL 710
Cdd:COG1196 763 EELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-917 |
8.68e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 8.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 128 ELEALRLSLSNM------HTAQLELTQANLQkEKETALTELREMLNsrRAQELALLQSRQQHELELlREQHAREKEEVVL 201
Cdd:TIGR02168 240 ELEELQEELKEAeeeleeLTAELQELEEKLE-ELRLEVSELEEEIE--ELQKELYALANEISRLEQ-QKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 202 RCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlCLENLRKELSAKH--QSEMEDLQNQFQKELAEQRAELEKIFQD 279
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKE-ELESLEAELEELEaeLEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 280 KNQAERALRNLESHhQAAIEKLREDLQSEhgrcLEDLEFKFKESEKEK-QLELENLQASYEDLKAQSQEEIRRLWSQLDS 358
Cdd:TIGR02168 395 IASLNNEIERLEAR-LERLEDRRERLQQE----IEELLKKLEEAELKElQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 359 ARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL---------------RIYFEKKLRDAEKTYqedltll 423
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknqsglsgilgvlseLISVDEGYEAAIEAA------- 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 424 qqrLQGAREDALLDSVEVGLSCVGLEEKPEKGRkdhVDELEPERHKESLPRF-QAELEESHRHQLEALESPLCIQHEGHV 502
Cdd:TIGR02168 543 ---LGGRLQAVVVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGnDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 503 S-----DRCCVETS---------ALGHEWRLEPSEGHsqelpWVHLQGVQDGdleADTERAARVLGLETEHKvQLSLLQT 568
Cdd:TIGR02168 617 AlsyllGGVLVVDDldnalelakKLRPGYRIVTLDGD-----LVRPGGVITG---GSAKTNSSILERRREIE-ELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 569 ELKEEIELLKIENRNLYGKLQhetRLKDDLEKVKhNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEK 648
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELE---ELEEELEQLR-KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 649 LTlmLLELREKAESEKQTIINKFELREAEMRQLQDQQAAqildLERSLTEQQGRLQQLEQDLTSddalhcsqcgreppta 728
Cdd:TIGR02168 764 EE--LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLNEEAAN---------------- 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 729 qdgelaalhvkedcaLQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQerhqqqllsvtaELEARHQAA 808
Cdd:TIGR02168 822 ---------------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE------------ELIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 809 LGELTASLESKQGALLAARvaELQTKHAADLGALETRHLSSLDSLESCylsefQTIREEHRQALELLRADFEEQLWKKDS 888
Cdd:TIGR02168 875 LEALLNERASLEEALALLR--SELEELSEELRELESKRSELRRELEEL-----REKLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820
....*....|....*....|....*....
gi 937500814 889 LHQTILtQELEKLKRKHEGELQSVRDHLR 917
Cdd:TIGR02168 948 EYSLTL-EEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1162-1839 |
9.53e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 9.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1162 QLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEH 1241
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1242 RLVLELESLRRQLQqaaqeqaalreectrlwsRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRsALLSQMKIL 1321
Cdd:TIGR02168 313 NLERQLEELEAQLE------------------ELESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1322 ESELEEQLSQhrgcakQAEAVTALEQQVASldkhLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAK---PQPWG 1398
Cdd:TIGR02168 374 LEELEEQLET------LRSKVAQLELQIAS----LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkelQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1399 PRDSQQAPLDGEVELLQQKLREKLDEFNElaiqKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLE 1478
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEE----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1479 QDKEVLKKQ--------QMSSLLLASTLQSTL-----------------DAGRCPEPPSGSPPEGpeiQLEVTQRALLRR 1533
Cdd:TIGR02168 520 GILGVLSELisvdegyeAAIEAALGGRLQAVVvenlnaakkaiaflkqnELGRVTFLPLDSIKGT---EIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1534 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqNSQTAVSLRELEEENTSL-----------KVIYTRSSE----IEE 1598
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD--DLDNALELAKKLRPGYRIvtldgdlvrpgGVITGGSAKtnssILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1599 LKATIENLQENQKRLQkekaEEIEQLHEVIEKLQHELSlmgpvvhevsdsqagSLQSELLCSQAGGPRGQALQGELEAAL 1678
Cdd:TIGR02168 675 RRREIEELEEKIEELE----EKIAELEKALAELRKELE---------------ELEEELEQLRKELEELSRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1679 EAKEALSRLLADQERRHSQALEALQQRLQGAEEA---AELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAER 1755
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1756 NLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQAR 1835
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
....
gi 937500814 1836 RATA 1839
Cdd:TIGR02168 896 LEEL 899
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1172-1846 |
3.41e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 3.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1172 RFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEgfkVETADLKEVLAGKEDSEHRLVLELESLR 1251
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE---ELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1252 RQLQQAAQEQAALREEctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRsALLSQMKILESELEEQLSQ 1331
Cdd:TIGR02168 313 NLERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1332 hrgcakQAEAVTALEQQVASLdkhlRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKP---QPWGPRDSQQAPLD 1408
Cdd:TIGR02168 384 ------LRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1409 GEVELLQQKLREKLDEFNElaiqKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQ- 1487
Cdd:TIGR02168 454 EELERLEEALEELREELEE----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELi 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1488 -------QMSSLLLASTLQSTL-----------------DAGRCPEPPSGSPPEGpeiQLEVTQRALLRRESEVLDLKEQ 1543
Cdd:TIGR02168 530 svdegyeAAIEAALGGRLQAVVvenlnaakkaiaflkqnELGRVTFLPLDSIKGT---EIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1544 LEKMKGDLESKNEEILHLNLKLDmqNSQTAVSLRELEEENTSL----------------------KVIYTRSSEIEELKA 1601
Cdd:TIGR02168 607 LVKFDPKLRKALSYLLGGVLVVD--DLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaktnSSILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1602 TIEnLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAK 1681
Cdd:TIGR02168 685 KIE-ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1682 EAL------SRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAER 1755
Cdd:TIGR02168 764 EELeerleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1756 NLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQAR 1835
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
730
....*....|.
gi 937500814 1836 RATAHTRVPGA 1846
Cdd:TIGR02168 924 LAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2443-2790 |
5.06e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 5.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2443 RRQVELLAYKVEqekciagDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSM 2522
Cdd:COG1196 224 ELEAELLLLKLR-------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2523 LSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAqssrlcvALKHEQTAKDNLQK 2602
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE-------AEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2603 ELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvhqdtQAHHALLQKLKEEKSR 2682
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE------EALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2683 VVDLQAMLEKVQQQALHSQQQLEAEAQKhcEALRREKERELELQRQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGSARR 2762
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEE--AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340
....*....|....*....|....*...
gi 937500814 2763 AAGSDADHLREQQRELEAMRQRLLSAAR 2790
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
766-1631 |
1.25e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 766 AEQDAFLQEAQEQHARELQLLQ----ERHQQQLLSVTAELE---ARHQAALGELTASLESKQGAL--LAARVAELQTK-- 834
Cdd:TIGR02168 212 AERYKELKAELRELELALLVLRleelREELEELQEELKEAEeelEELTAELQELEEKLEELRLEVseLEEEIEELQKEly 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 835 -HAADLGALETR---HLSSLDSLEScYLSEFQTIREEHRQALELLRADFEEQLWKKDSLhQTILTQELEKLKRKHEgELQ 910
Cdd:TIGR02168 292 aLANEISRLEQQkqiLRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEEL-KEELESLEAELEELEA-ELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 911 SVRDHLRT--EVSTELAGTVAHELQGV-----HQGEFGSEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQ 983
Cdd:TIGR02168 369 ELESRLEEleEQLETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 984 VQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKAdvnlshsergaLQDALRRLLGlFGETLRAAVTLRS 1063
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-----------LERLQENLEG-FSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1064 RIGERVGLCLD----DAGAGLALSTApaLEETWSDVALPELDrtlsecAEMSSVAEISSHMRESFLMSPESVRECEQPir 1139
Cdd:TIGR02168 517 GLSGILGVLSElisvDEGYEAAIEAA--LGGRLQAVVVENLN------AAKKAIAFLKQNELGRVTFLPLDSIKGTEI-- 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1140 rvfQSLSLAVDGLMEMALDSSRQLEEARqihSRFEKEFSFKNEETAqVVRKHQELLECLKEesaakaelaLELHKTQGTL 1219
Cdd:TIGR02168 587 ---QGNDREILKNIEGFLGVAKDLVKFD---PKLRKALSYLLGGVL-VVDDLDNALELAKK---------LRPGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1220 EGFKVETadlKEVLAGKEDSEHRLVLELESlrrqlqqaaqeqaaLREECTRLWSRGEATATDAEAREAALRKEVEDLTKE 1299
Cdd:TIGR02168 651 DGDLVRP---GGVITGGSAKTNSSILERRR--------------EIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1300 QSETRKQAEkdrsallsQMKILESELEEQLSQHRgcaKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQ 1379
Cdd:TIGR02168 714 LEQLRKELE--------ELSRQISALRKDLARLE---AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1380 EIQRLEGQLRQAAkpQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKK 1459
Cdd:TIGR02168 783 EIEELEAQIEQLK--EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1460 VAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSgsppegpeiqlevtQRALLRRESEVLD 1539
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL--------------RRELEELREKLAQ 926
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1540 LKEQLEKMKGDLESKNEEILHLnLKLDMQNSQTAVSLRELEEENTSLKVIYTRsSEIEELK----ATIENLQENQKRL-- 1613
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEE-YSLTLEEAEALENKIEDDEEEARRRLKRLE-NKIKELGpvnlAAIEEYEELKERYdf 1004
|
890 900
....*....|....*....|..
gi 937500814 1614 ---QKEKAEE-IEQLHEVIEKL 1631
Cdd:TIGR02168 1005 ltaQKEDLTEaKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
542-1047 |
1.73e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 542 LEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTE 621
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 622 LMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQtiinkfELREAEMRQLQDQQAAQILDLERSLTEQQG 701
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL------ERLEEELEELEEALAELEEEEEEEEEALEE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 702 RLQQLEQDLTSDDALhcsqcgrEPPTAQDGELAALHVKEDCALQLMLARsrfLEERKEITEKFSAEQDAFLQEAQEQHAR 781
Cdd:COG1196 447 AAEEEAELEEEEEAL-------LELLAELLEEAALLEAALAELLEELAE---AAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 782 ELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALEtrhlssLDSLESCYLSEF 861
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAA 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 862 QTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTELAGtvahELQGVHQGEFG 941
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 942 SEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGAN 1021
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
490 500
....*....|....*....|....*.
gi 937500814 1022 LLSMLKADVNLSHSERGALQDALRRL 1047
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERL 772
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
593-1485 |
3.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 593 RLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKEtdwkvmkEELQREAEEKltlmllelrEKAESEKQTIINKFE 672
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEEL-------EELTAELQEL---------EEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 673 LREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDalhcsqcgrepptaqdgelaalhvkedcalqlmlARSR 752
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE----------------------------------AQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 753 FLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQllsvtAELEARHQAALGELTAsleskqgalLAARVAELq 832
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----EELESRLEELEEQLET---------LRSKVAQL- 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 833 tkhaadlgaletrhlssldslescylsefqtireehRQALELLRADFEEQlwkkdSLHQTILTQELEKLKRKHEGELQSV 912
Cdd:TIGR02168 392 ------------------------------------ELQIASLNNEIERL-----EARLERLEDRRERLQQEIEELLKKL 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 913 RDHLRTEVSTELAgtvahelqgvhqgefgsEKKTALHEKEETLRlqsaqaqpFHQEEKESLSLQLQKKNHQVQQLKDQVL 992
Cdd:TIGR02168 431 EEAELKELQAELE-----------------ELEEELEELQEELE--------RLEEALEELREELEEAEQALDAAERELA 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 993 SLSHEIEecrsELEVLQQRRERENREGANLLsmlkADVNLSHSERGALQDALRrllglFGETLRAAV--TLRSRIGERVG 1070
Cdd:TIGR02168 486 QLQARLD----SLERLQENLEGFSEGVKALL----KNQSGLSGILGVLSELIS-----VDEGYEAAIeaALGGRLQAVVV 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1071 LCLDDAGAGLAlSTAPALEETWSDVALPELDRTLSECAEMSSVAEIsshmrESFLMSPESVRECEQPIRRVFQSL---SL 1147
Cdd:TIGR02168 553 ENLNAAKKAIA-FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI-----EGFLGVAKDLVKFDPKLRKALSYLlggVL 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1148 AVDGLmEMALDSSRQLE--------EARQIHSRFEKEFSFKNEETAQVVRKhQELLECLKEesaaKAELALELHKTQGTL 1219
Cdd:TIGR02168 627 VVDDL-DNALELAKKLRpgyrivtlDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEK----IEELEEKIAELEKAL 700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1220 EGFKVETADLKEVLAGKEDSEHRLVLELESLRrqlqQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTKE 1299
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALR----KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1300 QSETRKQAEKdrsallsqmkiLESELEEQLSQhrgCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEreefQQ 1379
Cdd:TIGR02168 777 LAEAEAEIEE-----------LEAQIEQLKEE---LKALREALDELRAELTLLNEEAANLRERLESLERRIAAT----ER 838
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1380 EIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKK 1459
Cdd:TIGR02168 839 RLEDLEEQIEELSE---------DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
890 900
....*....|....*....|....*.
gi 937500814 1460 VAQLQEEVEKQKNIVKGLEQDKEVLK 1485
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-1634 |
3.82e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 606 IEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLT-LMLLELR-EKAESEKQTIINKFELREAEMRQLQd 683
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKaERYQALLkEKREYEGYELLKEKEALERQKEAIE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 684 qqaAQILDLERSLTEQQGRLQQLEQDLTsddalhcsqcgrepptaqdgelAALHVKEDCALQLM-LARSRFLEERKEItE 762
Cdd:TIGR02169 244 ---RQLASLEEELEKLTEEISELEKRLE----------------------EIEQLLEELNKKIKdLGEEEQLRVKEKI-G 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 763 KFSAEQdAFLQEAQEQHARELQLLQERhQQQLLSVTAELEARHQAALGELTAslESKQGALLAARVAELQTKHA---ADL 839
Cdd:TIGR02169 298 ELEAEI-ASLERSIAEKERELEDAEER-LAKLEAEIDKLLAEIEELEREIEE--ERKRRDKLTEEYAELKEELEdlrAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 840 GALETrhlssldslescylsEFQTIREEHRQalellradfeeqlwkkdslhqtiLTQELEKLKRKHEgELQSVRDHLRte 919
Cdd:TIGR02169 374 EEVDK---------------EFAETRDELKD-----------------------YREKLEKLKREIN-ELKRELDRLQ-- 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 920 vstelagtvahelqgvhqgefgsEKKTALHEKEETLRLQSA---QAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSH 996
Cdd:TIGR02169 413 -----------------------EELQRLSEELADLNAAIAgieAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 997 EIEECRSELEVLQQRRERENREGANLLSMLKADVNLSHSERGA---LQDALRRLLGLFGETLRaavtlrsrIGERVGLCL 1073
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVeevLKASIQGVHGTVAQLGS--------VGERYATAI 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1074 DDAGAGLAlstapaleetwsDVALPELDRTLSECAEMSSVAEISshmRESFLmspesvreceqPIRRVFQSLSLAVDGLM 1153
Cdd:TIGR02169 542 EVAAGNRL------------NNVVVEDDAVAKEAIELLKRRKAG---RATFL-----------PLNKMRDERRDLSILSE 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1154 EMALDSSRQLEEARQihsRFEKEFSF--------KNEETAQ-------VVRKHQELLEclkeesaaKAELALELHKTQGT 1218
Cdd:TIGR02169 596 DGVIGFAVDLVEFDP---KYEPAFKYvfgdtlvvEDIEAARrlmgkyrMVTLEGELFE--------KSGAMTGGSRAPRG 664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1219 LEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTK 1298
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1299 EQSETrkqaEKDRSALLSQMKILESELEEQlsqhrgcakqAEAVTALEQQVASLDKHLRnqrqfmDEQAAEREHEREEFQ 1378
Cdd:TIGR02169 745 DLSSL----EQEIENVKSELKELEARIEEL----------EEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLE 804
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1379 QEIQRLEGQLRQAakpqpwgprDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVlmqEEEIKRLEEMNINIRK 1458
Cdd:TIGR02169 805 EEVSRIEARLREI---------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---ENLNGKKEELEEELEE 872
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1459 KVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQstldagrcpeppsgsPPEGPEIQLEVTQRALLRRESEvl 1538
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE---------------KKRKRLSELKAKLEALEEELSE-- 935
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1539 dlkeqLEKMKGDLESKNEEILHLNlKLDMQNSQTAVSLRELEEENtsLKVIytrsSEIEELKATIENLQENQKRLQKEKa 1618
Cdd:TIGR02169 936 -----IEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEPVN--MLAI----QEYEEVLKRLDELKEKRAKLEEER- 1002
|
1050
....*....|....*.
gi 937500814 1619 EEIEQLHEVIEKLQHE 1634
Cdd:TIGR02169 1003 KAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1409-1722 |
9.13e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 9.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1409 GEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1488
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1489 MSSLLLASTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmq 1568
Cdd:TIGR02168 312 ANLERQLEELEAQLE--------------ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE-- 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1569 nSQTAVSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHElslmgpvvhevsds 1648
Cdd:TIGR02168 376 -ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA-------------- 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937500814 1649 QAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQ---ALEALQQRLQGAEEAAELQLAELER 1722
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
209-1018 |
1.68e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 209 ELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALR 288
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 289 NLESHHQAAIEKLREDLqsehgrcLEDLEFKFKESEKEKQLElenlqasyEDLKAQSQEEIRRLWSQLDSARTSRQELSE 368
Cdd:pfam02463 250 QEEIESSKQEIEKEEEK-------LAQVLKENKEEEKEKKLQ--------EEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 369 LHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQqrlqgaREDALLDSVEvglscvGL 448
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ------LEEELLAKKK------LE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 449 EEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvsdrccVETSALGHEWRLEPSEGHSQE 528
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE--------EEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 529 LPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQteLKEEIELLKIENRNLYGKLQhetRLKDDLEKVKHNLIED 608
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ--KLEERSQKESKARSGLKVLL---ALIKDGVGGRIISAHG 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 609 HQKELNNAKQKTELMKQEFQRKET----DWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQ 684
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVsataDEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 685 QAAQILDLERSL-TEQQGRLQQLEQDLTSDDALHCSQCGREPPTAQDGELAALHVKEdcalQLMLARSRFLEERKEITEK 763
Cdd:pfam02463 610 KATLEADEDDKRaKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKA----SLSELTKELLEIQELQEKA 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 764 FSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALE 843
Cdd:pfam02463 686 ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 844 TRHLSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTE 923
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 924 LAGTVAHELQGVHQGEFgSEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRS 1003
Cdd:pfam02463 846 QKLEKLAEEELERLEEE-ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
810
....*....|....*
gi 937500814 1004 ELEVLQQRRERENRE 1018
Cdd:pfam02463 925 EEAEILLKYEEEPEE 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
860-1789 |
1.87e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 860 EFQTIREEHRQA-LELLRADFEEQLWKKDSLHQTIltQELEKLKRKHEGELQSVRDHLRTevsTELAGTVAHELQGVHQG 938
Cdd:TIGR02168 214 RYKELKAELRELeLALLVLRLEELREELEELQEEL--KEAEEELEELTAELQELEEKLEE---LRLEVSELEEEIEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 939 EFGsEKKTALHEKEETLRLQSAQAQPFHQEEKEsLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1018
Cdd:TIGR02168 289 ELY-ALANEISRLEQQKQILRERLANLERQLEE-LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1019 GANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLrSRIGERVGLCLDDAGAGLALSTAPALEETWSDvaLP 1098
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-ERLEDRRERLQQEIEELLKKLEEAELKELQAE--LE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1099 ELDRTLSECAEMSSVAEisshmresflmspESVRECEQPIRRVFQSLSLAVDGLMEMA--LDSSRQLEEARQIHSRFEKE 1176
Cdd:TIGR02168 444 ELEEELEELQEELERLE-------------EALEELREELEEAEQALDAAERELAQLQarLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1177 FSFKNEETAQVVRKHQELLECLKEESAAKaELALELHKTQGTLEGF---KVETADLKEVLAGKedsehRLVLELESLRRQ 1253
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAI-EAALGGRLQAVVVENLnaaKKAIAFLKQNELGR-----VTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1254 LQQAAQEQAALREECtrlwsrgeatatdaeareaalrkeVEDLTKEQSETRKQAEKDRSALLSQMKILESeLEEQLSQHR 1333
Cdd:TIGR02168 585 EIQGNDREILKNIEG------------------------FLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1334 GCAKQAEAVTaleqqvasLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAkpqpwgprdSQQAPLDGEVEL 1413
Cdd:TIGR02168 640 KLRPGYRIVT--------LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELE---------EKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1414 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQdkevlkkqqmssll 1493
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE-------------- 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1494 lastlqstldagrcpeppsgsppegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNlkldMQNSQTA 1573
Cdd:TIGR02168 769 ----------------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR----AELTLLN 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1574 VSLRELEEENTSLKviytrsSEIEELKATIENLQEnqkrlqkekaeEIEQLHEVIEKLQHELSLMGpVVHEVSDSQAGSL 1653
Cdd:TIGR02168 817 EEAANLRERLESLE------RRIAATERRLEDLEE-----------QIEELSEDIESLAAEIEELE-ELIEELESELEAL 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1654 QSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAE-----------EAAELQLAELER 1722
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvridnlqerlsEEYSLTLEEAEA 958
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937500814 1723 NVALREAEVEDMASRIQEFEAALKAkeatIAERNL----EIDALNQRKAAHSAELEAVLLALARIRRALEQ 1789
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKE----LGPVNLaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1577-1905 |
2.20e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 2.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1577 RELEEENTSLKVIYtRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSlmgpvVHEVSDSQAGSLQSE 1656
Cdd:COG1196 216 RELKEELKELEAEL-LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL-----ELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1657 LLCSQAggpRGQALQGELEAALEAKEALSRLLADQERRHsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMAS 1736
Cdd:COG1196 290 EYELLA---ELARLEQDIARLEERRRELEERLEELEEEL-AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1737 RIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQ 1816
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1817 VLHQRFLRCQVELDRRQARRATAHTRVPGAHPQprmdgGAKAQVTGDVEASHDAALEPVVPDPQGDLQPVLVTLKDAPLC 1896
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAA-----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
....*....
gi 937500814 1897 KQEGVMSVL 1905
Cdd:COG1196 521 GLAGAVAVL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1138-1641 |
3.55e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1138 IRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQG 1217
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1218 TLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLwsrgEATATDAEAREAALRKEVEDLT 1297
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL----EEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1298 KEQSETRKQAEKDRSALLSQMKiLESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEF 1377
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAE-EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1378 QQEIQRLEGQLRQAAKPQ-----PWGPRDSQQAPLDGEVELLQQKLREKLDEfnelAIQKESADRQVLMQEEEIKRLEEM 1452
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGavavlIGVEAAYEAALEAALAAALQNIVVEDDEV----AAAAIEYLKAAKAGRATFLPLDKI 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1453 NINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV------- 1525
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsaggsl 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1526 ----TQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKA 1601
Cdd:COG1196 663 tggsRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 937500814 1602 TIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPV 1641
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREIEALGPV 782
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
744-1366 |
1.10e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 744 LQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQhARELQLLQERHQQQLLSVTAELEARhQAALGELTASLESKQGAL 823
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEA-QAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 824 laARVAELQTKHAADLGALETRHLSSLDSLEscylsEFQTIREEHRQALELLRADFEEQLWKKDSLhqtilTQELEKLKR 903
Cdd:COG1196 305 --ARLEERRRELEERLEELEEELAELEEELE-----ELEEELEELEEELEEAEEELEEAEAELAEA-----EEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 904 KHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQpfHQEEKESLSLQLQKKNHQ 983
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE--LEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 984 VQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRS 1063
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1064 RIGERVGLCLDDAGAGLALstapaleetwsdVALPELDRTLSECAEMSSVAEISshmresflmspesvreceqpiRRVFQ 1143
Cdd:COG1196 531 GVEAAYEAALEAALAAALQ------------NIVVEDDEVAAAAIEYLKAAKAG---------------------RATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1144 SLSLAVDGLMEMALDSSRQLEEARQIHSrfekefsfknEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFK 1223
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVA----------SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1224 VETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREEctrlwsRGEATATDAEAREAALRKEVEDLTKEQSET 1303
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE------ELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1304 RKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEA--VTALEQQVASLDK-----------------HLRNQRQFMD 1364
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEReiealgpvnllaieeyeELEERYDFLS 801
|
..
gi 937500814 1365 EQ 1366
Cdd:COG1196 802 EQ 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2370-2749 |
1.39e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2370 LERLEKIIREQgdlqEKSLEHLrlpdrssllsEIQALRAqlrmthlqnqEKLQHLRTALTSAEARgsqqehqlrrqveLL 2449
Cdd:TIGR02168 188 LDRLEDILNEL----ERQLKSL----------ERQAEKA----------ERYKELKAELRELELA-------------LL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2450 AYKVEQekciagdLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENE 2529
Cdd:TIGR02168 231 VLRLEE-------LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2530 LKAALQELESEQGKgralQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQssrlCVALKHEQTAKDNLQKELRIEHS 2609
Cdd:TIGR02168 304 KQILRERLANLERQ----LEELEAQLEELESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2610 RCEALLAQERSQLSELQKDLAAEKSRTLELSEALrherlltEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAM 2689
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2690 LEKVQQQALHSQQQLEAEAQKHCEALRREKERELELQRQRDlhKIKQLQQTVRDLESKDE 2749
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA--RLDSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2529-2802 |
2.79e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 2.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2529 ELKAALQELESE----QGKGRALQSQLEEEQLRHLQRESQSAKA-LEELRASLETQRAQssrlcvaLKHEQTAKDNLQKE 2603
Cdd:COG1196 217 ELKEELKELEAEllllKLRELEAELEELEAELEELEAELEELEAeLAELEAELEELRLE-------LEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2604 LRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcVHQDTQAHHALLQKLKEEKSRV 2683
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL-EEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2684 VDLQAMLEKVQQQALHSQQQLEAEAQkhcEALRREKERELELQRQRDLHKIKQLQQTVRDLESKDEvpGSRLHLGSARRA 2763
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRA---AAELAAQLEELEEAEEALLERLERLEEELEELEEALA--ELEEEEEEEEEA 443
|
250 260 270
....*....|....*....|....*....|....*....
gi 937500814 2764 AGSDADHLREQQRELEAMRQRLLSAARLLTSFTSQAVDR 2802
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1286-1789 |
4.05e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 4.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1286 EAALRKEVEDLTKEQ-------SETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRN 1358
Cdd:COG4717 48 LERLEKEADELFKPQgrkpelnLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1359 QRQFMDEQAAerehereefQQEIQRLEGQLRQA-AKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQK-ESAD 1436
Cdd:COG4717 128 LPLYQELEAL---------EAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1437 RQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlkKQQMSSLLLASTLQSTLDAGRCPEPPSGSPP 1516
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL--KEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1517 EGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKN---EEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRS 1593
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1594 SEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQhelslmgpvvhevsdsqagslqsellcsqaggprgqalqge 1673
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE----------------------------------------- 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1674 leaalEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKA--KEAT 1751
Cdd:COG4717 396 -----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQleEDGE 470
|
490 500 510
....*....|....*....|....*....|....*...
gi 937500814 1752 IAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQ 1789
Cdd:COG4717 471 LAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2345-2633 |
4.76e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 4.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2345 KEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLpdRSSLLSEIQALRAQLRMTHLQNQEKLQHL 2424
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE--LEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2425 RTALTSAEAR---GSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQK-------LLAAEQTVVRDLKSD 2494
Cdd:TIGR02168 294 ANEISRLEQQkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEelesleaELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2495 LCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRE-SQSAKALEELR 2573
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQ 453
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2574 ASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERsQLSELQKDLAAEK 2633
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-NLEGFSEGVKALL 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1530-1782 |
9.64e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 9.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1530 LLRRESEVLDLKEQLEKMkGDLESKNEEILhlnlkldmqnsQTAVSLRELEEENTSLKViYTRSSEIEELKATIENLQEN 1609
Cdd:COG4913 237 LERAHEALEDAREQIELL-EPIRELAERYA-----------AARERLAELEYLRAALRL-WFAQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1610 QKRLQKEKAE---EIEQLHEVIEKLQHELSlmgpvvhevsdsqagslqsellcsQAGGPRGQALQGELEAALEAKEALSR 1686
Cdd:COG4913 304 LARLEAELERleaRLDALREELDELEAQIR------------------------GNGGDRLEQLEREIERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1687 LLADQErrhsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRK 1766
Cdd:COG4913 360 RRARLE----ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
250
....*....|....*.
gi 937500814 1767 AAHSAELEAVLLALAR 1782
Cdd:COG4913 436 SNIPARLLALRDALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1531-1824 |
1.56e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1531 LRRESEV----LDLKEQLEKMK-----GDLESKNEEILHLNLKLDMQNSQ---TAVSLRELEEENTSLKV-IYTRSSEIE 1597
Cdd:TIGR02168 205 LERQAEKaeryKELKAELRELElallvLRLEELREELEELQEELKEAEEEleeLTAELQELEEKLEELRLeVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1598 ELKATIENLQENQKRLQKEKA---EEIEQLHEVIEKLQHELslmgpvvhEVSDSQAGSLQSELlcsQAGGPRGQALQGEL 1674
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQL--------EELESKLDELAEEL---AELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1675 EAALEAKEALSRLLADQERRhSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAE 1754
Cdd:TIGR02168 354 ESLEAELEELEAELEELESR-LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1755 rnLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLR 1824
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2462-2660 |
1.75e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2462 DLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQ 2541
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2542 GK-----------GRA------LQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKEL 2604
Cdd:COG4942 104 EElaellralyrlGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 2605 RIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEA 2660
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1289-1630 |
3.42e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1289 LRKEVEDLTKEQSETRKQAEKDRSALL-SQMKILESELEEQLSQhrgCAKQAEAVTALEQQVASLDK---HLRNQRQFMD 1364
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWNKELkSELKNQEKKLEEIQNQ---ISQNNKIISQLNEQISQLKKeltNSESENSEKQ 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1365 EQAAEREHEREEFQQEIQRLEGQLRQaakpqpwgprdsqqapLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEE 1444
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKN----------------LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1445 EIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAgrcpeppsgsppegpeiqle 1524
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ-------------------- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1525 vTQRALLRRESEVLDLKEQ---LEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL----------KVIYT 1591
Cdd:TIGR04523 487 -KQKELKSKEKELKKLNEEkkeLEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkkenleKEIDE 565
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 937500814 1592 RSSEIEELKATIENLQENQKRLQ---KEKAEEIEQLHEVIEK 1630
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIEE 607
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
562-1251 |
3.72e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 3.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 562 QLSLLQTELKEEIELLKIENRNLYGK---LQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMK 638
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 639 EELQREAEEKLTL-MLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLtsddalh 717
Cdd:TIGR02168 351 EELESLEAELEELeAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI------- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 718 cSQCGREPPTAQDGELAALHVKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHAR------ELQLLQERHQ 791
Cdd:TIGR02168 424 -EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqarldSLERLQENLE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 792 Q-----------------------QLLSVTAELEARHQAALGELTASL--ESKQGALLAarvAELQTKHAADLGALETRH 846
Cdd:TIGR02168 503 GfsegvkallknqsglsgilgvlsELISVDEGYEAAIEAALGGRLQAVvvENLNAAKKA---IAFLKQNELGRVTFLPLD 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 847 LSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSLHQTI----LTQELEKLKRKHEGELQSVRDhlrtevst 922
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddLDNALELAKKLRPGYRIVTLD-------- 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 923 elaGTVAHElQGVHQGEFGSEKKTALHEKEETLRLQSAQAQpfHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECR 1002
Cdd:TIGR02168 652 ---GDLVRP-GGVITGGSAKTNSSILERRREIEELEEKIEE--LEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1003 SELEVLQ---QRRERENREGANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAG 1079
Cdd:TIGR02168 726 RQISALRkdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1080 LALSTapaleetwsdvalpELDRTLSECAEMSSVAEISSHMRESFLMSPESVRECEQPIRRVFQSLSLAVDGLMEMALDS 1159
Cdd:TIGR02168 806 DELRA--------------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1160 SRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDS 1239
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
730
....*....|..
gi 937500814 1240 EHRLVLELESLR 1251
Cdd:TIGR02168 952 TLEEAEALENKI 963
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2342-2656 |
4.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2342 AFEKEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREqgDLQEKSLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEKL 2421
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEE--LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2422 QHLRTALTSAEArgsQQEHQLRRQVELLAYKVEQEKCIAgDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQK 2501
Cdd:TIGR02168 750 AQLSKELTELEA---EIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2502 SEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEeqlrHLQRESQSAKALEELRASLETQRA 2581
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2582 QSSrlcvALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQR 2656
Cdd:TIGR02168 902 ELR----ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2416-2749 |
9.22e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 9.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2416 QNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTlSEEQEKANSVQKllAAEQTVVRDLKSDL 2495
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-AAAKKKADEAKK--KAEEKKKADEAKKK 1439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2496 CESRQKSEQLSRSLCEVQQ-EVLQLRSMLSSKENELKAALQEL-ESEQGKGRALQSQLEEEQLRHLQRESQSAkalEELR 2573
Cdd:PTZ00121 1440 AEEAKKADEAKKKAEEAKKaEEAKKKAEEAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKAAEAKKKA---DEAK 1516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2574 ASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKdlAAEKSRTLelseALRHERLLTEQL 2653
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK--KAEEDKNM----ALRKAEEAKKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2654 SQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKER------ELELQR 2727
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEnkikaaEEAKKA 1670
|
330 340
....*....|....*....|..
gi 937500814 2728 QRDLHKIKQLQQTVRDLESKDE 2749
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAE 1692
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1595-1821 |
9.32e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 9.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1595 EIEELKATIENLQENQKRLQKEKA-----EEIEQLHEVIEKLQHELS----LMGPVVHEVSDSQAGSLQSELlcsqaggp 1665
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDAREqiellEPIRELAERYAAARERLAeleyLRAALRLWFAQRRLELLEAEL-------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1666 rgQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAAL 1745
Cdd:COG4913 298 --EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 1746 KAKEATIAERNLEIDAlnqRKAAHSAELEAVLLALARIRRALEQqplaagaappelqwLRAQCARLSRQLQVLHQR 1821
Cdd:COG4913 376 PASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRD--------------LRRELRELEAEIASLERR 434
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1596-1846 |
1.00e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1596 IEELKATIENLQENQKRLQKE--KAEEIEQLHEVIEKLQHELSLMGPVVHEVS----DSQAGSLQSELlcsqaggprgQA 1669
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREreKAERYQALLKEKREYEGYELLKEKEALERQkeaiERQLASLEEEL----------EK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1670 LQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKE 1749
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1750 ATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVEL 1829
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250
....*....|....*..
gi 937500814 1830 DRRQARRATAHTRVPGA 1846
Cdd:TIGR02169 416 QRLSEELADLNAAIAGI 432
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
640-1252 |
1.02e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 640 ELQREAEE-KLTLMLLELREkAESEKQTIINKFELREAEMRQLQDQQAAqildLERSLTEQQGRLQQLEQDLTSddalhc 718
Cdd:COG1196 217 ELKEELKElEAELLLLKLRE-LEAELEELEAELEELEAELEELEAELAE----LEAELEELRLELEELELELEE------ 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 719 sqcgrepptAQDGELAALHVKEDC--ALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLS 796
Cdd:COG1196 286 ---------AQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 797 vtAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALETRHLSSLdslescyLSEFQTIREEHRQALELLR 876
Cdd:COG1196 357 --EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA-------EEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 877 ADFEEQLWKKDSLHQTILTQ--ELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHElqgvhqgefgsekktALHEKEET 954
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAaeEEAELEEEEEALLELLAELLEEAALLEAALAELLE---------------ELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 955 LRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEE-CRSELEVLQQRRERENREGAnllsmlkadvnls 1033
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAaLEAALAAALQNIVVEDDEVA------------- 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1034 hseRGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTLSECAEMSSV 1113
Cdd:COG1196 560 ---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1114 AEISSHMREsflmspesVRECEQPIRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQE 1193
Cdd:COG1196 637 RRAVTLAGR--------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 1194 LLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRR 1252
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1423-1873 |
1.04e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1423 DEFNElaiQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQknivkgLEQDKEVLKKQQMSSLLLASTLQSTL 1502
Cdd:TIGR02169 166 AEFDR---KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA------ERYQALLKEKREYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1503 DagrcpeppsgsppegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEE 1582
Cdd:TIGR02169 237 R------------------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1583 NTSlkviytrssEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKlqhelslmgpvvHEVSDSQAGSLQSELlcsqa 1662
Cdd:TIGR02169 299 LEA---------EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE------------IEELEREIEEERKRR----- 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1663 ggprgQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAElQLAELERNVALREAEVEDMASRIQEFE 1742
Cdd:TIGR02169 353 -----DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR-EINELKRELDRLQEELQRLSEELADLN 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1743 AALKAKEATIAErnLEidalnqrkaahsAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLhqrf 1822
Cdd:TIGR02169 427 AAIAGIEAKINE--LE------------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL---- 488
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 1823 lrcQVELDRRQARRATAHTRVPGAHPQPRMDG-------GAKAQVtGDVEASHDAALE 1873
Cdd:TIGR02169 489 ---QRELAEAEAQARASEERVRGGRAVEEVLKasiqgvhGTVAQL-GSVGERYATAIE 542
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2369-2785 |
1.40e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2369 LLERLEKIIREQGDLQEKSLEHLRLpdRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVEL 2448
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2449 LAYKVEQEkciagDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKEN 2528
Cdd:COG1196 417 ERLEEELE-----ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2529 ELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEH 2608
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2609 SRCEALLAQERSQLSELQK-----------DLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHALL---- 2673
Cdd:COG1196 572 GRATFLPLDKIRARAALAAalargaigaavDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtl 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2674 -------------QKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKERELELQRQRDLHKIKQLQQT 2740
Cdd:COG1196 652 egeggsaggsltgGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 937500814 2741 VRDLESKD---EVPGSRLHLGSARRAAGSDADHLREQQRELEAMRQRL 2785
Cdd:COG1196 732 AEREELLEellEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1542-1794 |
1.53e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1542 EQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKviyTRSSEIEELKATIENLQENQKRLQKEkaeeI 1621
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA---ALARRIRALEQELAALEAELAELEKE----I 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1622 EQLHEVIEKLQHELSLMgpvvheVSDSQAGSLQSELLCsqaggprgqALQGELEAALEAKEALSRLLADQERRHSQALEA 1701
Cdd:COG4942 93 AELRAELEAQKEELAEL------LRALYRLGRQPPLAL---------LLSPEDFLDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1702 LQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALA 1781
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
250
....*....|...
gi 937500814 1782 RIRRALEQQPLAA 1794
Cdd:COG4942 238 AAAERTPAAGFAA 250
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2367-2692 |
2.07e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2367 SSLLERLEKIIREQGDLQEK-SLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQL-RR 2444
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIeEL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2445 QVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQL---RS 2521
Cdd:TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqIK 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2522 MLSSKENELKAALQELESEQGKGRALQSQLEEEqLRHLQRESQSAKA-LEELRASLETQRAQSSRLCVALKHEQTAKDNL 2600
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAqLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2601 QKELriehSRCEALLAQERSQLSELQ--KDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvHQDTQAHHAllqKLKE 2678
Cdd:TIGR02169 930 EEEL----SEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR--LDELKEKRA---KLEE 1000
|
330
....*....|....
gi 937500814 2679 EKSRVVDLQAMLEK 2692
Cdd:TIGR02169 1001 ERKAILERIEEYEK 1014
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-709 |
2.19e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 104 AITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQlelTQANLQKEKETALTELREMLNSRRAQELALLQSRQQH 183
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR---RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 184 ElELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQ 263
Cdd:PTZ00121 1305 D-EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 264 KELAEQRAELEKIfqdKNQAERALRNLESHHQAAIEKLREDlqsehgrcledlEFKFKESEKEKQLELENlqasyedlKA 343
Cdd:PTZ00121 1384 KKKAEEKKKADEA---KKKAEEDKKKADELKKAAAAKKKAD------------EAKKKAEEKKKADEAKK--------KA 1440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 344 QSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRvEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEdltll 423
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE----- 1514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 424 QQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvs 503
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE---- 1590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 504 drccvetsalghEWRLEPSEGHSQELPWVHLQgvqdgDLEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKIEnrn 583
Cdd:PTZ00121 1591 ------------EARIEEVMKLYEEEKKMKAE-----EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE--- 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 584 lygklqhETRLKDDLEKVKHNliEDHQKELNNAKQKTELMK-QEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAES 662
Cdd:PTZ00121 1651 -------ELKKAEEENKIKAA--EEAKKAEEDKKKAEEAKKaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 937500814 663 EKQTIINKFELREAEMRQLQDQQAAQILDLERsltEQQGRLQQLEQD 709
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE---EEKKKIAHLKKE 1765
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1154-1634 |
2.21e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1154 EMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALElhktqgtLEGFKVETADLKEVL 1233
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR-------QAAIKAEEARKADEL 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1234 AGKEDsehrlVLELESLRRQLQQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSA 1313
Cdd:PTZ00121 1284 KKAEE-----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1314 LLS---QMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQ 1390
Cdd:PTZ00121 1359 AEAaeeKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1391 AAKPQPWGPRDSQQAPLDGEVELLQQKLRE--KLDEFNELAIQKESADRQVLMQEEEIKRLEEMN--INIRKKVAQLQEE 1466
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKA 1518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1467 VEKQK-------NIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEI-QLEVTQRALLRRESEVL 1538
Cdd:PTZ00121 1519 EEAKKadeakkaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVM 1598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1539 DLKEQLEKMKGDLESKNEE----------------ILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKAT 1602
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEakikaeelkkaeeekkKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510
....*....|....*....|....*....|....*.
gi 937500814 1603 IENLQENQKRLQKE----KAEEIEQLHEVIEKLQHE 1634
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEalkkEAEEAKKAEELKKKEAEE 1714
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
547-1489 |
2.41e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 547 ERAARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQhetrLKDDLEKVKHNLIEDHQKELnNAKQKTELMKQE 626
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ----LKEKLELEEEYLLYLDYLKL-NEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 627 FQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQL 706
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 707 EQDLTsddalhcsqcgrepptaqdgelaalhvkedcalQLMLARSRFLEERKEITEKFSAEqdaflqEAQEQHARELQLL 786
Cdd:pfam02463 327 EKELK---------------------------------KEKEEIEELEKELKELEIKREAE------EEEEEELEKLQEK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 787 QERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARvaelqtkhaadlgaLETRHLSSLDSLESCYLSEFQTIRE 866
Cdd:pfam02463 368 LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ--------------LLLELARQLEDLLKEEKKEELEILE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 867 EHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKT 946
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 947 ALHEKEETLRLQSAQAQPFHQEekESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSML 1026
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLG--VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1027 KADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALpELDRTLSE 1106
Cdd:pfam02463 592 KSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKS-EVKASLSE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1107 CAEMSSVAEISShMRESFLMSPESVRECEQPIRRVFQSLSlavdglmemaLDSSRQLEEARQIHSRFEKEFSFKNEETAQ 1186
Cdd:pfam02463 671 LTKELLEIQELQ-EKAESELAKEEILRRQLEIKKKEQREK----------EELKKLKLEAEELLADRVQEAQDKINEELK 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1187 VVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALRE 1266
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1267 EctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALE 1346
Cdd:pfam02463 820 E--------QLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1347 QQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLrqaakpqpwgprDSQQAPLDGEVELLQQKLREKLDEFN 1426
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY------------EEEPEELLLEEADEKEKEENNKEEEE 959
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937500814 1427 ELAIQKESAdrqvlMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQM 1489
Cdd:pfam02463 960 ERNKRLLLA-----KEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2357-2744 |
3.22e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.50 E-value: 3.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2357 RLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLPDRSSLL-SEIQALRAQLR--MTHLQNQEKLQHLRTALTSAEA 2433
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLeQDYQAASDHLNlvQTALRQQEKIERYQEDLEELTE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2434 RGSQQ--------EHQLRRQVELLAykVEQE-KCIAG---DLQKTLSEEQEKANSVQKLLAA-----EQTVVRDLKSDLC 2496
Cdd:COG3096 362 RLEEQeevveeaaEQLAEAEARLEA--AEEEvDSLKSqlaDYQQALDVQQTRAIQYQQAVQAlekarALCGLPDLTPENA 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2497 ESRQksEQLSRSLCEVQQEVLQLRSMLSSKE---NELKAALQ-------ELESEQGKGRAlQSQLEE--EQLRHLQRESQ 2564
Cdd:COG3096 440 EDYL--AAFRAKEQQATEEVLELEQKLSVADaarRQFEKAYElvckiagEVERSQAWQTA-RELLRRyrSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2565 SAKALEELRASLETQ---RAQSSRLCVALKHEQTAKDNLQKELriehsrceallaqerSQLSELQKDLAAEKSRTLELSE 2641
Cdd:COG3096 517 LRAQLAELEQRLRQQqnaERLLEEFCQRIGQQLDAAEELEELL---------------AELEAQLEELEEQAAEAVEQRS 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2642 ALRHERlltEQLSQRTQEacvhqdtqahhallqkLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALrrEKER 2721
Cdd:COG3096 582 ELRQQL---EQLRARIKE----------------LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLL--ERER 640
|
410 420
....*....|....*....|...
gi 937500814 2722 ELELQRQRDLHKIKQLQQTVRDL 2744
Cdd:COG3096 641 EATVERDELAARKQALESQIERL 663
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-1021 |
3.47e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 161 ELREMLNSRRAQELALLQSRQQHElELLREQHAREKEEVvlRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCL 240
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 241 ENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIeklredlQSEHGRCLEDLEfKF 320
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI-------KAEEARKADELK-KA 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 321 KESEKEKQLELENLQASYEDLKAQSQEEirrlwSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQ 400
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 401 LRiyfEKKLRDAEKTYQEDltllqqrlqgAREDALLDSVEVGLSCVGLEEKPEKGRK--DHVDELEPERHK-ESLPRFQA 477
Cdd:PTZ00121 1362 AE---EKAEAAEKKKEEAK----------KKADAAKKKAEEKKKADEAKKKAEEDKKkaDELKKAAAAKKKaDEAKKKAE 1428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 478 ELEESHRHQLEAlesplciqheghvsdrccvETSALGHEWRLEPSEGHSQElpwvhlqgvqDGDLEADTERAARVLGLET 557
Cdd:PTZ00121 1429 EKKKADEAKKKA-------------------EEAKKADEAKKKAEEAKKAE----------EAKKKAEEAKKADEAKKKA 1479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 558 EHKVQLSllqtELKEEIELLKIENRNLYgKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDwkVM 637
Cdd:PTZ00121 1480 EEAKKAD----EAKKKAEEAKKKADEAK-KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE--LK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 638 KEELQREAEEKltlmllelrEKAESEKqtiinkfelREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALH 717
Cdd:PTZ00121 1553 KAEELKKAEEK---------KKAEEAK---------KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 718 CSQcgrepptaqdgelaalhvkedcalqlmlARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELqllqeRHQQQLLSV 797
Cdd:PTZ00121 1615 AEE----------------------------AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL-----KKAEEENKI 1661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 798 TAELEARHQAalgeltaslESKQGALLAARVAELQTKHAADLGALETrhlssldslESCYLSEFQTIREEHRQALELLRA 877
Cdd:PTZ00121 1662 KAAEEAKKAE---------EDKKKAEEAKKAEEDEKKAAEALKKEAE---------EAKKAEELKKKEAEEKKKAEELKK 1723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 878 DFEEQLWKKDSLHQtilTQELEKLK----RKHEGELQSVRdHLRTEVSTElAGTVAHELQGVHQGEFGSEKKTALHEKEE 953
Cdd:PTZ00121 1724 AEEENKIKAEEAKK---EAEEDKKKaeeaKKDEEEKKKIA-HLKKEEEKK-AEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 954 TLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRsELEVLQQRRERENREGAN 1021
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD-AFEKHKFNKNNENGEDGN 1865
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1143-1780 |
3.62e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1143 QSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSfknEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGF 1222
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1223 KVETADLKEVLAGKEDSEHRLvLELESLRRQLQQAAQeqaalreectrlwsrgeatatDAEAREAALRKEVEDLTKEQSE 1302
Cdd:COG1196 305 ARLEERRRELEERLEELEEEL-AELEEELEELEEELE---------------------ELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1303 TRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQ 1382
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1383 RLEGQLRQAAkpqpwgprdsqqapldgEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQ 1462
Cdd:COG1196 443 ALEEAAEEEA-----------------ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1463 LQEEVEKQKNIVKGLEQDKEVLkkQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDlke 1542
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVA--VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD--- 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1543 qleKMKGDLESKNEEILHLNLKLdmqnsqtavsLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEie 1622
Cdd:COG1196 581 ---KIRARAALAAALARGAIGAA----------VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR-- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1623 qlhEVIEKLQHELSLMGPvvhevsdSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEAL 1702
Cdd:COG1196 646 ---LREVTLEGEGGSAGG-------SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 1703 QQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERnleIDALNQRKAAhsaeLEAV-LLAL 1780
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE---LERLEREIEA----LGPVnLLAI 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
256-883 |
3.88e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 256 EDLQNQFQkELAEQRAELEKIfqdKNQAErALRNLESHHQAaIEKLREDLQsEHGRCLEDLEFKFKEsekEKQLELENLQ 335
Cdd:COG4913 228 DALVEHFD-DLERAHEALEDA---REQIE-LLEPIRELAER-YAAARERLA-ELEYLRAALRLWFAQ---RRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 336 ASYEDLKAQSQEEIRRLWSQLDSARtsrQELSELHEQLLAR-TSRVEDLEQLKQREKTQHEsELEQLRIYFEKKLRDAEK 414
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALR---EELDELEAQIRGNgGDRLEQLEREIERLERELE-ERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 415 TY---QEDLTLLQQRLQGARED--ALLDSVEVGLSCVGLEEKPEKGRKDHV-DELEP-ERHKESLPRFQAELEESHRHQL 487
Cdd:COG4913 374 PLpasAEEFAALRAEAAALLEAleEELEALEEALAEAEAALRDLRRELRELeAEIASlERRKSNIPARLLALRDALAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 488 EALESPLCIQHEghvsdrcCVETSALGHEWRlEPSEG--HSQELpwvhlqgvqdgDLEADTERAARVL----GLETEHKV 561
Cdd:COG4913 454 GLDEAELPFVGE-------LIEVRPEEERWR-GAIERvlGGFAL-----------TLLVPPEHYAAALrwvnRLHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 562 QLSLLQTELKEE----------IELLKIENRNLYGKLQHETRLKDDLEKVkhnlieDHQKELNNAKQ---KTELMKQEFQ 628
Cdd:COG4913 515 VYERVRTGLPDPerprldpdslAGKLDFKPHPFRAWLEAELGRRFDYVCV------DSPEELRRHPRaitRAGQVKGNGT 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 629 RKETDWKVMKEE---LQREAEEKLTLMLLELREkAESEKQTIINKFELREAEMRQLQDQQAA-----QILDLERSLTEQQ 700
Cdd:COG4913 589 RHEKDDRRRIRSryvLGFDNRAKLAALEAELAE-LEEELAEAEERLEALEAELDALQERREAlqrlaEYSWDEIDVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 701 GRLQQLEQDLtsdDALhcsqcgreppTAQDGELAALHVKEDcALQLMLARSRflEERKEITEKFSAEQDAfLQEAQEQHA 780
Cdd:COG4913 668 REIAELEAEL---ERL----------DASSDDLAALEEQLE-ELEAELEELE--EELDELKGEIGRLEKE-LEQAEEELD 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 781 RELQLLQERHQQQLLSVTAELEARHQAALG-----ELTASLESKQGAL------LAARVAELQTKHAADLGALETRHLSS 849
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGdaverELRENLEERIDALrarlnrAEEELERAMRAFNREWPAETADLDAD 810
|
650 660 670
....*....|....*....|....*....|....
gi 937500814 850 LDSLEScYLSEFQTIREEHrqaLELLRADFEEQL 883
Cdd:COG4913 811 LESLPE-YLALLDRLEEDG---LPEYEERFKELL 840
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1199-1821 |
4.44e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 55.98 E-value: 4.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1199 KEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLWSRGEAT 1278
Cdd:pfam10174 49 KEEAARISVLKEQYRVTQEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQ 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1279 ATDAEAreaaLRKEVEDLtKEQSETRKQAEKDRSalLSQMKILESELEEQLSQhrgcaKQAEAVTALEQQVASLDKHLrn 1358
Cdd:pfam10174 129 AKELFL----LRKTLEEM-ELRIETQKQTLGARD--ESIKKLLEMLQSKGLPK-----KSGEEDWERTRRIAEAEMQL-- 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1359 qrQFMDEQAAEREHEREEFQQEIQRlegqlRQAAKPQPWGPRDSQQA--PLDGEVELLQQKLREKLDEFNELaiqKESAD 1436
Cdd:pfam10174 195 --GHLEVLLDQKEKENIHLREELHR-----RNQLQPDPAKTKALQTVieMKDTKISSLERNIRDLEDEVQML---KTNGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1437 RQVLMQEEEIKRLEEMNIN---IRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSG 1513
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHskfMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1514 SPPEGPEIQLEVTQRALLRRESEVLDLKEQ-------LEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL 1586
Cdd:pfam10174 345 TEVDALRLRLEEKESFLNKKTKQLQDLTEEkstlageIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERV 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1587 KVIYTRSSEIEELKAT-----------IENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSqAGSLQS 1655
Cdd:pfam10174 425 KSLQTDSSNTDTALTTleealsekeriIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESS-LIDLKE 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1656 ELLCSQAGGPRGQALQGELEAALEAK-EALSRLLADQERRHSQALEA------------LQQRLQGAEEAAELQLAELER 1722
Cdd:pfam10174 504 HASSLASSGLKKDSKLKSLEIAVEQKkEECSKLENQLKKAHNAEEAVrtnpeindrirlLEQEVARYKEESGKAQAEVER 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1723 NV-ALREAEVE--DMASRIQEFE--AALKAKEATIAERNLEiDALNQRKAAHSAELEAVLLALARIRRALEQQPLA--AG 1795
Cdd:pfam10174 584 LLgILREVENEknDKDKKIAELEslTLRQMKEQNKKVANIK-HGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEelMG 662
|
650 660
....*....|....*....|....*.
gi 937500814 1796 AAPPELQWLRAQCARLSRQLQVLHQR 1821
Cdd:pfam10174 663 ALEKTRQELDATKARLSSTQQSLAEK 688
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-705 |
4.66e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 154 EKETALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEVV---------LRCGQEAAELKEKLQSEMEKNAQI 224
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRkfeearmahFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 225 VKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAE---QRAELEKIFQD--KNQAERALRNLE-SHHQAAI 298
Cdd:PTZ00121 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADaakKKAEEAKKAAEaaKAEAEAAADEAEaAEEKAEA 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 299 EKLRED----------LQSEHGRCLEDLEFKFKESEKE----KQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTS-- 362
Cdd:PTZ00121 1369 AEKKKEeakkkadaakKKAEEKKKADEAKKKAEEDKKKadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAde 1448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 363 ---RQELSELHEQLLARTSRVEDLEQLKQR-EKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQR-LQGAREDALLD 437
Cdd:PTZ00121 1449 akkKAEEAKKAEEAKKKAEEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKkAEEAKKADEAK 1528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 438 SVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvSDRCCVETSALGHEW 517
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE---EARIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 518 RLEPSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQlsllqtELKEEIELLKIENRNLYGKLQHETRLKDD 597
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE------ELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 598 LEKVKHnliEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTiINKFELREAE 677
Cdd:PTZ00121 1680 AKKAEE---DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEE 1755
|
570 580
....*....|....*....|....*...
gi 937500814 678 MRQLQDQQAAQILDLERSLTEQQGRLQQ 705
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-392 |
5.19e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 151 LQKEKETALTELREMLN-----SRRAQELALLQSRQQHELELLREQHAREKEEvvlrcgqeAAELKEKLQS---EMEKNA 222
Cdd:TIGR02169 686 LKRELSSLQSELRRIENrldelSQELSDASRKIGEIEKEIEQLEQEEEKLKER--------LEELEEDLSSleqEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 223 QIVKTLKEDWEsEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAiEKLR 302
Cdd:TIGR02169 758 SELKELEARIE-ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-EKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 303 EDLQ----------SEHGRCLEDLEFK---FKESEKEKQLELENLQASYEDLKaqsqEEIRRLWSQLDSARTSRQELSEL 369
Cdd:TIGR02169 836 QELQeqridlkeqiKSIEKEIENLNGKkeeLEEELEELEAALRDLESRLGDLK----KERDELEAQLRELERKIEELEAQ 911
|
250 260
....*....|....*....|....
gi 937500814 370 HEQLLARTSRV-EDLEQLKQREKT 392
Cdd:TIGR02169 912 IEKKRKRLSELkAKLEALEEELSE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2419-2791 |
6.20e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 6.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2419 EKLQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDlcES 2498
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD--EA 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2499 RQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLR--HLQRESQSAKALEELRASL 2576
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKadAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2577 ETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDlaAEKSRTLELSEALRHERLLTEQLSQR 2656
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2657 TQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLE--KVQQQALHSQQQLEAEAQKHCEALRR--EKERELELQRQRDLH 2732
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADeaKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAEELK 1558
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937500814 2733 K---IKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDADHLREQQRELEAMRQRLLSAARL 2791
Cdd:PTZ00121 1559 KaeeKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2378-2750 |
7.34e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 7.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2378 REQGDLQEKSLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELlayKVEQEK 2457
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA---KKAEEK 1545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2458 CIAGDLQKtlSEEQEKANSVQKllaAEQTvvRDLKSDLCESRQKSEQLSrslcevQQEVLQLRSMLSSKENELKAALQEL 2537
Cdd:PTZ00121 1546 KKADELKK--AEELKKAEEKKK---AEEA--KKAEEDKNMALRKAEEAK------KAEEARIEEVMKLYEEEKKMKAEEA 1612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2538 -ESEQGKGRALQSQLEEEQLRHLQ----RESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCE 2612
Cdd:PTZ00121 1613 kKAEEAKIKAEELKKAEEEKKKVEqlkkKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2613 ALL--AQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEacvhQDTQAHHAllQKLKEEKSRVvdlqaml 2690
Cdd:PTZ00121 1693 ALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE----DKKKAEEA--KKDEEEKKKI------- 1759
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937500814 2691 ekvqqqalhsqQQLEAEAQKHCEALRREKERELELQ-RQRDLHKIKQLQQTVRDLESKDEV 2750
Cdd:PTZ00121 1760 -----------AHLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1657-1844 |
8.07e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 8.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1657 LLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQrLQGAEEAAELQLAELERNVALREAEVEDMAS 1736
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1737 RIQEFEAALKAKEATIAERNLEIDALNQR-------KAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCA 1809
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190
....*....|....*....|....*....|....*
gi 937500814 1810 RLSRQLQVLHQRFLRCQVELDRRQARRATAHTRVP 1844
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLE 205
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
104-709 |
8.51e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 8.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 104 AITDLESGREDEAGLhqSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQeLALLQSRQQH 183
Cdd:pfam12128 232 AIAGIMKIRPEFTKL--QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNG 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 184 ELELLREQHAREKEEVvlrcgqEAAE--LKEKLQSEMEKNAQIVKTLkEDWESEkdlcLENLRKELSA---KHQSEMEDL 258
Cdd:pfam12128 309 ELSAADAAVAKDRSEL------EALEdqHGAFLDADIETAAADQEQL-PSWQSE----LENLEERLKAltgKHQDVTAKY 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 259 QNQFQKELAEQRAELEKIFQD----KNQAERALRNLESHHQAAIEKLREDLQSEHGRcLEDLEFKFKESEKEKQLELENL 334
Cdd:pfam12128 378 NRRRSKIKEQNNRDIAGIKDKlakiREARDRQLAVAEDDLQALESELREQLEAGKLE-FNEEEYRLKSRLGELKLRLNQA 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 335 QASYEDL--KAQSQEEIRRLWSQLDSARTSRQELSElhEQLLARTSRVEDLEQLKQREK--TQHESELEQLRIYFEKKLR 410
Cdd:pfam12128 457 TATPELLlqLENFDERIERAREEQEAANAEVERLQS--ELRQARKRRDQASEALRQASRrlEERQSALDELELQLFPQAG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 411 DAEKTYQEDLTLLQQRLQGAREDALLdsvevglscvgleekpekGRKDHVDELEPERHKESLPRFQAELEeshrhqLEAL 490
Cdd:pfam12128 535 TLLHFLRKEAPDWEQSIGKVISPELL------------------HRTDLDPEVWDGSVGGELNLYGVKLD------LKRI 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 491 ESPLCIQHEGHVSDRCCVETSALGHEwrlepSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTEL 570
Cdd:pfam12128 591 DVPEWAASEEELRERLDKAEEALQSA-----REKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 571 KEEIEllkienrnlygklQHETRLKDDLEKVKHNLieDHQKELNNAKQKteLMKQEFQRKETDWKVMKEELQREAEEklt 650
Cdd:pfam12128 666 KDKKN-------------KALAERKDSANERLNSL--EAQLKQLDKKHQ--AWLEEQKEQKREARTEKQAYWQVVEG--- 725
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 651 lmllELREKAESEKQTIINKFELREAEMRQLQDQQAAQ----------ILDLERSLTEQQGRLQQLEQD 709
Cdd:pfam12128 726 ----ALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslgvdpdvIAKLKREIRTLERKIERIAVR 790
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1164-1775 |
8.90e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 8.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1164 EEARQIHSRFEKEFSFKNE--ETAQVVRKHQELL---ECLKEESAAKAELALELHKTQGTLEGFKVETA----DLKEVLA 1234
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEakKKAEDARKAEEARkaeDARKAEEARKAEDAKRVEIARKAEDARKAEEArkaeDAKKAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1235 GKEDSEHRLVLEL---ESLRRQLQQAAQEQAALREECTRLwsrgeatatdAEAREAALRKEVEDLTKEQSETRKqAEKDR 1311
Cdd:PTZ00121 1181 ARKAEEVRKAEELrkaEDARKAEAARKAEEERKAEEARKA----------EDAKKAEAVKKAEEAKKDAEEAKK-AEEER 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1312 SAllSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQA 1391
Cdd:PTZ00121 1250 NN--EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1392 AKPQPWGPRDSQQAPLDGEVELLQQKLREKldefnELAIQKESADRQVLMQEEEIKRLEEMninirKKVAqlqEEVEKQK 1471
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAAD-----EAEAAEEKAEAAEKKKEEAKKKADAA-----KKKA---EEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1472 NIVKGLEQDK----EVLKKQQMSSLllASTLQSTLDAGRCPEPPSGSPPEGPEIQlEVTQRALLRRESEVLDLKEQLEKM 1547
Cdd:PTZ00121 1395 EAKKKAEEDKkkadELKKAAAAKKK--ADEAKKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1548 KGDLESKNEEILHLN--LKLDMQNSQTAVSLRELEEENTslKVIYTRSSE----IEELKATIE--NLQENQKRLQKEKAE 1619
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADeaKKKAEEAKKKADEAKKAAEAKK--KADEAKKAEeakkADEAKKAEEakKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1620 EIEQLHEVieKLQHELSLMGPVVHEVSDSQAGSLQSELLcsqaggprGQALQGELEAALEAKEALSRLLADQERRHSQAL 1699
Cdd:PTZ00121 1550 ELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEA--------KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 1700 EALQQRLQGAEEAAELQLAELERNVALREAE---VEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEA 1775
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1414-1754 |
1.08e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1414 LQQKLRE-----KLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1488
Cdd:TIGR02169 216 LLKEKREyegyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1489 MSSLllastlqsTLDAGRCPEPPSGSPPegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ 1568
Cdd:TIGR02169 296 IGEL--------EAEIASLERSIAEKER-----ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1569 NSQTAVSLRELEEENTSLKVIYTRSS----EIEELKATIENLQENQKRLQkekaEEIEQLHEVIEKLQHELslmgpvvhE 1644
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKdyreKLEKLKREINELKRELDRLQ----EELQRLSEELADLNAAI--------A 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1645 VSDSQAGSLQSELLcsqaggprgqALQGELEAALEAKEALSRLLADQERRHSQaLEALQQRLQGAEEAAELQLAELERNV 1724
Cdd:TIGR02169 431 GIEAKINELEEEKE----------DKALEIKKQEWKLEQLAADLSKYEQELYD-LKEEYDRVEKELSKLQRELAEAEAQA 499
|
330 340 350
....*....|....*....|....*....|
gi 937500814 1725 ALREAEVEDMASRIQEFEAALKAKEATIAE 1754
Cdd:TIGR02169 500 RASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2425-2750 |
1.38e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2425 RTALTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTlSEEQEKANSVQKllAAEQTVVRDLKSdlCESRQKSEQ 2504
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKK--AEEAKKADEAKK--AEEAKKADE 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2505 LSRSlcevqQEVlqlrsmlsSKENELKAAlQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSS 2584
Cdd:PTZ00121 1539 AKKA-----EEK--------KKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2585 RlcvALKHEQTAKDNlQKELRIEHSRCEAllaQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEacvhQ 2664
Cdd:PTZ00121 1605 K---KMKAEEAKKAE-EAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE----D 1673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2665 DTQAHHAllqKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEREL----ELQRQRDLHKiKQLQQT 2740
Cdd:PTZ00121 1674 KKKAEEA---KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaeEAKKEAEEDK-KKAEEA 1749
|
330
....*....|
gi 937500814 2741 VRDLESKDEV 2750
Cdd:PTZ00121 1750 KKDEEEKKKI 1759
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-491 |
2.57e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 151 LQKEKETAL--TELREMLNSRRAQELAllqsrqqHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEknaQIVKTL 228
Cdd:TIGR02169 203 LRREREKAEryQALLKEKREYEGYELL-------KEKEALERQKEAIERQL-----ASLEEELEKLTEEIS---ELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 229 KEdwesekdlcLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEkifqdknQAERALRNLESHHQAAIEKLREdLQSE 308
Cdd:TIGR02169 268 EE---------IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA-------SLERSIAEKERELEDAEERLAK-LEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 309 HGRCLEDLEfKFKESEKEKQLELENLQASYEDLKaqsqeeirrlwsqlDSARTSRQELSELHEQllARTSRVEDLEQLKQ 388
Cdd:TIGR02169 331 IDKLLAEIE-ELEREIEEERKRRDKLTEEYAELK--------------EELEDLRAELEEVDKE--FAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 389 REKTQHesELEQLRIYfEKKLRDAEKTYQEDLTLLQQRLQGARED-ALLDSV--EVGLSCVGLEEKPEKGRKDHVD-ELE 464
Cdd:TIGR02169 394 LEKLKR--EINELKRE-LDRLQEELQRLSEELADLNAAIAGIEAKiNELEEEkeDKALEIKKQEWKLEQLAADLSKyEQE 470
|
330 340
....*....|....*....|....*..
gi 937500814 465 PERHKESLPRFQAELEESHRhQLEALE 491
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQR-ELAEAE 496
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1291-1635 |
2.65e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1291 KEVEDLTKEQSETRKQAEKDRSALlSQMKILESELEEQLSQHrgcakQAEAVTALEQQVASLDKHLRNQRQFMDEQAAER 1370
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKEL-EQNNKKIKELEKQLNQL-----KSEISDLNNQKEQDWNKELKSELKNQEKKLEEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1371 EHEREEFQQEIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKLREKLDEFNELAIQKESadrqvlmQEEEIKRLE 1450
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKK---------ELTNSESENSEKQRELEEKQNEIEKLKKENQS-------YKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1451 EmNINIRKKVAQLQEEVEKQKNI-VKGLEQDKEVLKKQQMSSLLLASTLQSTLDagrcpepPSGSPPEGPEIQLEVTQRA 1529
Cdd:TIGR04523 391 S-QINDLESKIQNQEKLNQQKDEqIKKLQQEKELLEKEIERLKETIIKNNSEIK-------DLTNQDSVKELIIKNLDNT 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1530 LLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTavslRELEEENTSLKviytrsSEIEELKatienlqEN 1609
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK----KELEEKVKDLT------KKISSLK-------EK 525
|
330 340
....*....|....*....|....*....
gi 937500814 1610 QKRLQKEKAE---EIEQLHEVIEKLQHEL 1635
Cdd:TIGR04523 526 IEKLESEKKEkesKISDLEDELNKDDFEL 554
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
230-870 |
2.83e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 230 EDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLRE--DLQS 307
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 308 EhgrcLEDLEFKFKESEKEKqlelenlqasyEDLKAQSQEEIRRLwSQLDSARTSRQELSELHEqllARTSRVEDLEQLK 387
Cdd:PRK02224 259 E----IEDLRETIAETERER-----------EELAEEVRDLRERL-EELEEERDDLLAEAGLDD---ADAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 388 QREKTQHESELEQLRIYFEKKLRDAEkTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEkpekgRKDHVDELEpER 467
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEAREAVED-----RREEIEELE-EE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 468 HKESLPRFQ---AELEESHRHQLEALEsplciQHEGHVSDRCCVETSALGHEWRLEPSE-----GHSQELPwvhlQGVQD 539
Cdd:PRK02224 393 IEELRERFGdapVDLGNAEDFLEELRE-----ERDELREREAELEATLRTARERVEEAEalleaGKCPECG----QPVEG 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 540 -GDLEADTERAARVLGLETEhKVQLSLLQTELKEEIELLKienrnlyGKLQHETRLKDDLEKVK--HNLIEDHQKELNNA 616
Cdd:PRK02224 464 sPHVETIEEDRERVEELEAE-LEDLEEEVEEVEERLERAE-------DLVEAEDRIERLEERREdlEELIAERRETIEEK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 617 KQKTELMKQEfqrketdwkvmKEELQREAEEKltlmllelREKAesekqtiinkfelreAEMRQLQDQQAAQILDLERSL 696
Cdd:PRK02224 536 RERAEELRER-----------AAELEAEAEEK--------REAA---------------AEAEEEAEEAREEVAELNSKL 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 697 TEQQGRLQQLEQDLTSDDALhcSQCGREPPTAQDgELAALHVKEDcalqlmLARSRFLEERKEITEKFSAEQDAFLQEAQ 776
Cdd:PRK02224 582 AELKERIESLERIRTLLAAI--ADAEDEIERLRE-KREALAELND------ERRERLAEKRERKRELEAEFDEARIEEAR 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 777 EQHARelqllQERHQQQLLSVTAELEARH---QAALGELTASLEskqgallaaRVAELQTKH---AADLGALETRHlSSL 850
Cdd:PRK02224 653 EDKER-----AEEYLEQVEEKLDELREERddlQAEIGAVENELE---------ELEELRERRealENRVEALEALY-DEA 717
|
650 660
....*....|....*....|
gi 937500814 851 DSLESCYLsefqTIREEHRQ 870
Cdd:PRK02224 718 EELESMYG----DLRAELRQ 733
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1534-1814 |
3.03e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1534 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqnsqtavslrELEEENTSLKViytrssEIEELKATIENLQENQKRL 1613
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELE-----------ELNEEYNELQA------ELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1614 QKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQEr 1693
Cdd:COG3883 78 EAEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1694 rhsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAEL 1773
Cdd:COG3883 157 ---AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 937500814 1774 EAVllALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQ 1814
Cdd:COG3883 234 AAA--AAAAAAAASAAGAGAAGAAGAAAGSAGAAGAAAGAA 272
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
143-418 |
3.04e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 143 QLELTQANlqkekeTALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEvvlrcgqeaaelKEKLQSEMEKNA 222
Cdd:TIGR04523 273 QKELEQNN------KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK------------LEEIQNQISQNN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 223 QIVKTLKEDwesekdlcLENLRKELSAKhQSEMEDLQnqfqKELAEQRAELEKIFQDKNQAERALRNLESHhqaaIEKLR 302
Cdd:TIGR04523 335 KIISQLNEQ--------ISQLKKELTNS-ESENSEKQ----RELEEKQNEIEKLKKENQSYKQEIKNLESQ----INDLE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 303 EDLQsehgrcledlefKFKESEKEKQLELENLQASYEDLkaqsQEEIRRLWSQLDSartSRQELSELHEQLLARTSRVED 382
Cdd:TIGR04523 398 SKIQ------------NQEKLNQQKDEQIKKLQQEKELL----EKEIERLKETIIK---NNSEIKDLTNQDSVKELIIKN 458
|
250 260 270
....*....|....*....|....*....|....*.
gi 937500814 383 LEQLKQREKTQheseLEQLRIYFEKKLRDAEKTYQE 418
Cdd:TIGR04523 459 LDNTRESLETQ----LKVLSRSINKIKQNLEQKQKE 490
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
122-401 |
3.37e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 122 QAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMlnsrrAQELALLQ-SRQQHElellreqharekeevv 200
Cdd:COG3096 417 QAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEL-----EQKLSVADaARRQFE---------------- 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 201 lrcgqEAAELKEKLQSEMEKNA--QIVKTLKEDWESEKDLC--LENLRKELS-----AKHQSEMEDLQNQFQKELAEQRA 271
Cdd:COG3096 476 -----KAYELVCKIAGEVERSQawQTARELLRRYRSQQALAqrLQQLRAQLAeleqrLRQQQNAERLLEEFCQRIGQQLD 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 272 ELEKIFqdknqaeralrnlesHHQAAIEKLREDLQSEHGRCLEDLefkfkeseKEKQLELENLQASYEDLKAQ------S 345
Cdd:COG3096 551 AAEELE---------------ELLAELEAQLEELEEQAAEAVEQR--------SELRQQLEQLRARIKELAARapawlaA 607
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 346 QEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL 401
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
133-421 |
3.38e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 133 RLSLSNMHTAQLEltqaNLQKEKETALTELREMLNSRRAQELALLQSRQQHELELLREQ--HAREK-EEVVLRCGQEAAE 209
Cdd:PRK03918 450 RKELLEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKlKKYNLEELEKKAE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 210 LKEKLQSEMEKNAQIVKTLKEDWESEKDL---------CLENLRKELSAKHQsEMEDLQNQFQKELAEQRAELEKIFQDK 280
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELkkklaelekKLDELEEELAELLK-ELEELGFESVEELEERLKELEPFYNEY 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 281 NQAERALRNLEShhqaaIEKLREDLQSEHGRCLEDLEFKFKESEKEKQlELENLQASY-EDLKAQSQEEIRRLWSQLDSA 359
Cdd:PRK03918 605 LELKDAEKELER-----EEKELKKLEEELDKAFEELAETEKRLEELRK-ELEELEKKYsEEEYEELREEYLELSRELAGL 678
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937500814 360 RTSRQELSELHEQLlarTSRVEDL-EQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLT 421
Cdd:PRK03918 679 RAELEELEKRREEI---KKTLEKLkEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1414-1838 |
3.86e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1414 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMniniRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLL 1493
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1494 LASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILhlnlKLDMQNSQTA 1573
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD----DLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1574 VSLRELEEENTSLKV-IYTRSSEIEELKATIENLQE----------NQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVV 1642
Cdd:PRK02224 363 EEAAELESELEEAREaVEDRREEIEELEEEIEELRErfgdapvdlgNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1643 HEvsdsqAGSLQSELLCSQAGGP-RGQALQGELEAALEAKEALSRLLADQERRHsqalEALQQRLQGAEEaaelqLAELE 1721
Cdd:PRK02224 443 EE-----AEALLEAGKCPECGQPvEGSPHVETIEEDRERVEELEAELEDLEEEV----EEVEERLERAED-----LVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1722 RNVALREAEVEDMASRIQEfeaalkaKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPEL 1801
Cdd:PRK02224 509 DRIERLEERREDLEELIAE-------RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430
....*....|....*....|....*....|....*..
gi 937500814 1802 QWLRAQCARLSRQLQVLHQRfLRCQVELDRRQARRAT 1838
Cdd:PRK02224 582 AELKERIESLERIRTLLAAI-ADAEDEIERLREKREA 617
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1225-1820 |
5.50e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 5.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1225 ETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREEctrlwsrgeATATDAEAREAALRKEVEDLTK-----E 1299
Cdd:TIGR00618 227 ELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI---------EELRAQEAVLEETQERINRARKaaplaA 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1300 QSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQ---AEAVTALEQQVASLDKHLRNQ------RQFMDEQAAER 1370
Cdd:TIGR00618 298 HIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqssIEEQRRLLQTLHSQEIHIRDAhevatsIREISCQQHTL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1371 EHEREEFQQEIQRLEGQLRQAAKPQPWGPRD-SQQAPLDGEVELLQQKLrekLDEFNELAIQKESADRQVLMQEEEIKRL 1449
Cdd:TIGR00618 378 TQHIHTLQQQKTTLTQKLQSLCKELDILQREqATIDTRTSAFRDLQGQL---AHAKKQQELQQRYAELCAAAITCTAQCE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1450 EEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlKKQQMSSLLLASTLQSTLdagrCPEPPSGSPPEGPEIQLEVTQRA 1529
Cdd:TIGR00618 455 KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK-KAVVLARLLELQEEPCPL----CGSCIHPNPARQDIDNPGPLTRR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1530 LLRRESEVLDLKEQLEKMKGDLESKNEEILHLnlkldmqnsqtavSLRELEEENTSLKVIYTRSSEIEELKATIENLQEN 1609
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASL-------------KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1610 QKRLQKEKAEEI---EQLHEVIEKLQHELSLMGPVVHEVSDSQagSLQSELLCSQaggprgqalQGELEAALEAKEALSR 1686
Cdd:TIGR00618 597 QDLTEKLSEAEDmlaCEQHALLRKLQPEQDLQDVRLHLQQCSQ--ELALKLTALH---------ALQLTLTQERVREHAL 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1687 LLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRK 1766
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL 745
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 937500814 1767 AAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQ 1820
Cdd:TIGR00618 746 KELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1407-1775 |
5.67e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1407 LDGEVELLQQKLREKLDEFNelAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKK 1486
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLE--ALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1487 QQMSS----LLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV-------------TQRALLRRESEVLDlkEQLEKMKG 1549
Cdd:pfam15921 307 QARNQnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKqlvlanseltearTERDQFSQESGNLD--DQLQKLLA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1550 DLESKNEEIL---HLNLKL---DMQNSQTAVSLR-ELEEENTSLKVIytrSSEIEELKATIENLQENQKRLQKEKAEEIE 1622
Cdd:pfam15921 385 DLHKREKELSlekEQNKRLwdrDTGNSITIDHLRrELDDRNMEVQRL---EALLKAMKSECQGQMERQMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1623 QLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGprgqALQgELEAALEAKEA-LSRL-----LADQERRHS 1696
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTA----SLQ-EKERAIEATNAeITKLrsrvdLKLQELQHL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1697 QALEALQQRLQGAEEAAELQLAELERNVALREAEVEDM----------ASRIQEFEAALkakEATIAERNLEIDA---LN 1763
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQL---EKEINDRRLELQEfkiLK 613
|
410
....*....|..
gi 937500814 1764 QRKAAHSAELEA 1775
Cdd:pfam15921 614 DKKDAKIRELEA 625
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
135-793 |
6.49e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 6.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 135 SLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQeLALLQSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKL 214
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 215 QSEMEKNAQIvktlkedwESEKDLCLENLRKE--LSAKHQSEMEDLQNQFQKELAEQRaeleKIFQDKNQAERALRNLES 292
Cdd:pfam15921 288 SSARSQANSI--------QSQLEIIQEQARNQnsMYMRQLSDLESTVSQLRSELREAK----RMYEDKIEELEKQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 293 HHQAAIEKLREDLQSEHGRCLEDLEFKFKESEK-EKQLELEnlqasyedlkaqsQEEIRRLWsqlDSARTSRQELSELHE 371
Cdd:pfam15921 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKrEKELSLE-------------KEQNKRLW---DRDTGNSITIDHLRR 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 372 QLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKtyqedLTLLQQRLQGAREdaLLDSVevglscvgLEEK 451
Cdd:pfam15921 420 ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEK-----VSSLTAQLESTKE--MLRKV--------VEEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 452 PEKgrkdhvdELEPERHKESLPRFQAELEESHRhQLEALESplciqheghvsdrccvETSALGHEWRLEPSEGHSQELPW 531
Cdd:pfam15921 485 TAK-------KMTLESSERTVSDLTASLQEKER-AIEATNA----------------EITKLRSRVDLKLQELQHLKNEG 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 532 VHLQGVQdgdleadTERAARVLGLETEHKVqLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLiedhqK 611
Cdd:pfam15921 541 DHLRNVQ-------TECEALKLQMAEKDKV-IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL-----Q 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 612 ELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLM---------LLELREKAESEKQTIINKFELREAEMRQLQ 682
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVkdikqerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 683 DQQAAQILDLERSLTEQQGRLQQLEQDLTSDD-----ALHCSQCGREPPTAQDGELAALHVKEDCALQLMLARSRFLEER 757
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
650 660 670
....*....|....*....|....*....|....*...
gi 937500814 758 KEITEKFSAEQDAFLQEaQEQHARELQLL--QERHQQQ 793
Cdd:pfam15921 768 KEEKNKLSQELSTVATE-KNKMAGELEVLrsQERRLKE 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
98-401 |
7.20e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 98 EQECELAITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQELALL 177
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 178 QSRQQHELELLREQHaREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEdwesekdlcLENLRKELSAkHQSEMED 257
Cdd:TIGR02168 791 IEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAATERRLED---------LEEQIEELSE-DIESLAA 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 258 LQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLREdlqsehgrcLEDLEFKFKESEKEKQLELENLQAS 337
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE---------LESKRSELRRELEELREKLAQLELR 930
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 338 YEDLKAQSQEEIRRLWSqldsartsrqELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL 401
Cdd:TIGR02168 931 LEGLEVRIDNLQERLSE----------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2437-2660 |
7.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 7.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2437 QQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLcEVQQEV 2516
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL-EAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2517 L--QLRSMLSSKENELKAALQELESEQGKGRALQ--SQLEEEQLRHLQRESQSAKALEELRASLETQRAQssrlcvaLKH 2592
Cdd:COG4942 106 LaeLLRALYRLGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAERAE-------LEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 2593 EQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEA 2660
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
745-1068 |
7.87e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 745 QLMLARSRFLEERKEITEKFSAEQDAflqEAQEQHARE-LQLLQERHQQQllsvtaELEARHQAALGELTASLESKQGAL 823
Cdd:COG3096 300 QLAEEQYRLVEMARELEELSARESDL---EQDYQAASDhLNLVQTALRQQ------EKIERYQEDLEELTERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 824 LAArvAELQTKHAADLGALETRHlsslDSLESCY------LSEFQTIREEHRQALELLR----------------ADFEE 881
Cdd:COG3096 371 EEA--AEQLAEAEARLEAAEEEV----DSLKSQLadyqqaLDVQQTRAIQYQQAVQALEkaralcglpdltpenaEDYLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 882 QLW-KKDSLHQTILTQElEKL------KRKHEGELQSVRdHLRTEVSTELAGTVAHEL-----QGVHQGEFGSEKKTALH 949
Cdd:COG3096 445 AFRaKEQQATEEVLELE-QKLsvadaaRRQFEKAYELVC-KIAGEVERSQAWQTARELlrryrSQQALAQRLQQLRAQLA 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 950 EKEETLRLQSA---QAQPFHQEEKESLSLQLQKKNHQVQQ------LKDQVLSLSHEIEECRSELEVLQQR------RER 1014
Cdd:COG3096 523 ELEQRLRQQQNaerLLEEFCQRIGQQLDAAEELEELLAELeaqleeLEEQAAEAVEQRSELRQQLEQLRARikelaaRAP 602
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 937500814 1015 ENREGANLLSMLKADVNLSHSERGALQDALRRLLglfgETLRAAVTLRSRIGER 1068
Cdd:COG3096 603 AWLAAQDALERLREQSGEALADSQEVTAAMQQLL----EREREATVERDELAAR 652
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
95-425 |
1.20e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 95 KECEQECELAITDLESGREDEAGLHQsqavhglELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQEL 174
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRK-------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 175 ALLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEKNAQIVKTLKEDwesekdlcLENLRKELsakhqse 254
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEEL-----AEAEAEIEELEAQIEQLKEELKALREA--------LDELRAEL------- 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 255 medlqNQFQKELAEQRAELEKIFQDKNQAERALRNLEshhqAAIEKLREDLQSehgrcLEDLEFKFKESEKEKQLELENL 334
Cdd:TIGR02168 813 -----TLLNEEAANLRERLESLERRIAATERRLEDLE----EQIEELSEDIES-----LAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 335 QasyeDLKAQSQEEIRRLWSQLDSA----RTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLR 410
Cdd:TIGR02168 879 L----NERASLEEALALLRSELEELseelRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
330
....*....|....*
gi 937500814 411 DAEKTYQEDLTLLQQ 425
Cdd:TIGR02168 955 EAEALENKIEDDEEE 969
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
212-352 |
1.44e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 212 EKLQSEMEKNA-QIVKtlkedwESEKDLclENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNl 290
Cdd:PRK12704 30 EAKIKEAEEEAkRILE------EAKKEA--EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR- 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937500814 291 eshHQAAIEKLREDLQSEhgrcledlefkfKESEKEKQLELENLQASYEDLKAQSQEEIRRL 352
Cdd:PRK12704 101 ---KLELLEKREEELEKK------------EKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2370-2654 |
1.49e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2370 LERLEKIireqgDLQEKSLEHLRlpdrssllSEIQALRAQLRmthlQNQEKLQHLRTALTSAEARGSQQEHQlrRQVELL 2449
Cdd:PRK11281 69 LALLDKI-----DRQKEETEQLK--------QQLAQAPAKLR----QAQAELEALKDDNDEETRETLSTLSL--RQLESR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2450 AYKVEQEKciaGDLQKTLSEeqekANS-----------VQKLLAAEQTVVRDLKSDLCESRQKSEQLS---RSLCEVQQE 2515
Cdd:PRK11281 130 LAQTLDQL---QNAQNDLAE----YNSqlvslqtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2516 VLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQ------RESQSAKALEELRASLETQRAQSSRLcva 2589
Cdd:PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQeainskRLTLSEKTVQEAQSQDEAARIQANPL--- 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 2590 lkheqtakdnLQKELRIEHSRCEALLAQERsQLSEL-QKDLAAeKSRtleLSEALRHERLLTEQLS 2654
Cdd:PRK11281 280 ----------VAQELEINLQLSQRLLKATE-KLNTLtQQNLRV-KNW---LDRLTQSERNIKEQIS 330
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2443-2685 |
1.71e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2443 RRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLlAAEQTVVRDLKSDLCESRQKSEQLSRSlcevQQEVLQLRSM 2522
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKA----EEENKIKAAE 1665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2523 LSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRlcvALKHEQTAKDNLQK 2602
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN---KIKAEEAKKEAEED 1742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2603 ELRIEHSRCEallAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSR 2682
Cdd:PTZ00121 1743 KKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819
|
...
gi 937500814 2683 VVD 2685
Cdd:PTZ00121 1820 VIN 1822
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
153-494 |
1.77e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 153 KEKETALTELREMLNSRRAQELA--LLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKlqSEMEKNAQIVKTLKE 230
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEA-----KKAAEAKKK--ADEAKKAEEAKKADE 1526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 231 DWESEKDLCLENLRKELSAKHQSEM---EDLQNQFQKELAEQRAELEkifQDKNQAERALRNLESHHQAAIEKLREDLQS 307
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELkkaEELKKAEEKKKAEEAKKAE---EDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 308 EHGRCLEDLEFKFKESEKEKQL-ELENLQASYEDLKAQSQEEIR-----RLWSQLDSARTSRQELSELHEQLLARTSRVE 381
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELkKAEEEKKKVEQLKKKEAEEKKkaeelKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 382 DLEQLKQREKTQHESE----LEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDalldsvevglscvglEEKPEKGRK 457
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEeakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---------------EEDKKKAEE 1748
|
330 340 350
....*....|....*....|....*....|....*..
gi 937500814 458 DHVDELEPERHKESLPRFQAELEESHRHQLEALESPL 494
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
274-1018 |
1.86e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 274 EKIFQDKNQAERALRNL--ESHHQAAIEKlREDLQSEHGRCLEDLEFKFKESEKEKQLElenlqaSYEDLKAQSQEEIRR 351
Cdd:PTZ00121 1034 EYGNNDDVLKEKDIIDEdiDGNHEGKAEA-KAHVGQDEGLKPSYKDFDFDAKEDNRADE------ATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 352 LWSQLDSARTSRQELSELHEQLLARTSR-VEDLEQLKQREKTQHESELEQLRiyfekKLRDAEKTYQEDLTLLQQRLQGA 430
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-----KAEDARKAEEARKAEDAKKAEAA 1181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 431 REdalldSVEVglscvgleEKPEKGRK-DHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEGhvsdrccvE 509
Cdd:PTZ00121 1182 RK-----AEEV--------RKAEELRKaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA--------E 1240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 510 TSALGHEWRLEPSEGHSQELPWVHLQGVQDGdLEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKienrnlygKLQ 589
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAA-IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK--------KKA 1311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 590 HETRLKDDLEKVKhnliEDHQKELNNAKQKTELMKQ--EFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTI 667
Cdd:PTZ00121 1312 EEAKKADEAKKKA----EEAKKKADAAKKKAEEAKKaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 668 INKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALhcSQCGREPPTAQDGELAALHVKEDCALQLM 747
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 748 LARSRFLEE-RKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAElEARHQAalgELTASLESKQGAllAA 826
Cdd:PTZ00121 1466 AEEAKKADEaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKAD---EAKKAEEAKKAD--EA 1539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 827 RVAELQTKhaadlgALETRHLSSLDSLESCYLSEfQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKR--- 903
Cdd:PTZ00121 1540 KKAEEKKK------ADELKKAEELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAeea 1612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 904 KHEGELQSVRDHLRTE-----VSTELAGTVAHELQGVHQ----GEFGSEKKTALHEKEETLRLQSAQAQPfHQEEKESLS 974
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAeeekkKVEQLKKKEAEEKKKAEElkkaEEENKIKAAEEAKKAEEDKKKAEEAKK-AEEDEKKAA 1691
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 937500814 975 LQLQKKNHQ---VQQLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1018
Cdd:PTZ00121 1692 EALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1339-1742 |
1.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1339 AEAVTALEQQVASLDKHLRNQRQFMDEqaaerehereeFQQEIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKL 1418
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDE-----------LSQELSDASRKIGEIEK---------EIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1419 REKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEV--EKQKNIVKGLEQDKEVLKKQQMSSLLLAS 1496
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1497 TLQStldagrcpePPSGSPPEGPEIQLEVTQRALLrrESEVLDLKEQLEKMKGDLESKNEEIlhlnlkldmqnSQTAVSL 1576
Cdd:TIGR02169 820 KLNR---------LTLEKEYLEKEIQELQEQRIDL--KEQIKSIEKEIENLNGKKEELEEEL-----------EELEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1577 RELEEENTSLKviytrsSEIEELKATIENLQENQKRLQKE---KAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSL 1653
Cdd:TIGR02169 878 RDLESRLGDLK------KERDELEAQLRELERKIEELEAQiekKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1654 QSELLcsqaggprgQALQGELEAALEAKEALSrLLADQERrhsqalealqqrlqgaeEAAELQLAELERNVALREAEVED 1733
Cdd:TIGR02169 952 SLEDV---------QAELQRVEEEIRALEPVN-MLAIQEY-----------------EEVLKRLDELKEKRAKLEEERKA 1004
|
....*....
gi 937500814 1734 MASRIQEFE 1742
Cdd:TIGR02169 1005 ILERIEEYE 1013
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2371-2780 |
2.01e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2371 ERLEKIIREQGDlQEKSLEhlRLPDRSSLLSEIQALRAQLRMTHLQNQ-EKLQHLRTALTSAEARGSQQEHQLRRQVELL 2449
Cdd:pfam15921 74 EHIERVLEEYSH-QVKDLQ--RRLNESNELHEKQKFYLRQSVIDLQTKlQEMQMERDAMADIRRRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2450 AYKVEQEKCIAGDLQKTLSEEQEKansVQKLLAAEQTVVRDLKSDLCESRQKSEQ-------------------LSRSLC 2510
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQ---LRKMMLSHEGVLQEIRSILVDFEEASGKkiyehdsmstmhfrslgsaISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2511 EVQQEVL-----------QLRSMLSSKENELKAALQELE----------------------SEQGKGRALQSQLEEEQLR 2557
Cdd:pfam15921 228 ELDTEISylkgrifpvedQLEALKSESQNKIELLLQQHQdrieqliseheveitgltekasSARSQANSIQSQLEIIQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2558 HLQRESQSAKALEELRASLETQRaqsSRLCVALKHEQTAKDNLQKELRIEHSR-CEAllAQERSQLS--------ELQKD 2628
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSElTEA--RTERDQFSqesgnlddQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2629 LAAEKSRTLELSealrherlLTEQLSQRTQEACVHQDTQAHHaLLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEA 2708
Cdd:pfam15921 383 LADLHKREKELS--------LEKEQNKRLWDRDTGNSITIDH-LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937500814 2709 QKHCEALRREKERELELQRQRDLhkikqLQQTVRDLESKdevpgsRLHLGSARRAAGSDADHLREQQRELEA 2780
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEM-----LRKVVEELTAK------KMTLESSERTVSDLTASLQEKERAIEA 514
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
217-492 |
2.06e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 50.34 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 217 EMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLEshhqa 296
Cdd:COG5185 221 LLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTK----- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 297 aiEKLREDLQSehgrcledLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSrqeLSELHEQLLAR 376
Cdd:COG5185 296 --EKIAEYTKS--------IDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQES---LTENLEAIKEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 377 TSRVEDLEQLKQREKT--QHESELEQLRIYFEKKLRDAEKTYQEDLTLLQ----------QRLQGAREDALLDSVEVGLS 444
Cdd:COG5185 363 IENIVGEVELSKSSEEldSFKDTIESTKESLDEIPQNQRGYAQEILATLEdtlkaadrqiEELQRQIEQATSSNEEVSKL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 937500814 445 CVGLEEKPEKGRKDHVDELEP---ERHKESLPRFQAELEESHRhQLEALES 492
Cdd:COG5185 443 LNELISELNKVMREADEESQSrleEAYDEINRSVRSKKEDLNE-ELTQIES 492
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1182-1765 |
2.17e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1182 EETAQVVRkhqELLECLKEESAAK--AELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQ 1259
Cdd:PRK03918 145 ESREKVVR---QILGLDDYENAYKnlGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1260 EQAALREECTRLWSRGEATaTDAEAREAALRKEVEDLTKEQSETRKQAEKDR---SALLSQMKILEsELEEQLSQHRGCA 1336
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKELK-ELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1337 KQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQPWgprdsqqapldgevELLQQ 1416
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER--------------HELYE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1417 KLREKLDEFNELaiQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQmsslllas 1496
Cdd:PRK03918 366 EAKAKKEELERL--KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK-------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1497 tlqstldaGRCpeppsgsppegpeiqlevtqrALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKldmqnsqtavsL 1576
Cdd:PRK03918 436 --------GKC---------------------PVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK-----------E 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1577 RELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGpvvhevsdSQAGSLQSE 1656
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLK--------GEIKSLKKE 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1657 LlcsqaggPRGQALQGELEAAL----EAKEALSRLLADQERRHSQALEALQQRLQGAEEAAE--LQLAELERNVALREAE 1730
Cdd:PRK03918 548 L-------EKLEELKKKLAELEkkldELEEELAELLKELEELGFESVEELEERLKELEPFYNeyLELKDAEKELEREEKE 620
|
570 580 590
....*....|....*....|....*....|....*
gi 937500814 1731 VEDMASRIQEFEAALKAKEATIAERNLEIDALNQR 1765
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1402-1636 |
2.42e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1402 SQQAPLDGEVELLQQKLREKLDEFNElaiqkesadrqvlmQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDK 1481
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISN--------------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1482 -------EVLKKQQMSSLLlaSTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESK 1554
Cdd:TIGR04523 291 nqlkseiSDLNNQKEQDWN--KELKSELK--------------NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1555 NEEilhlNLKLDMQNSQTAVSLRELEEENTS-LKVIYTRSSEIEELKATIEN-------LQENQKRLQKEK---AEEIEQ 1623
Cdd:TIGR04523 355 ESE----NSEKQRELEEKQNEIEKLKKENQSyKQEIKNLESQINDLESKIQNqeklnqqKDEQIKKLQQEKellEKEIER 430
|
250
....*....|...
gi 937500814 1624 LHEVIEKLQHELS 1636
Cdd:TIGR04523 431 LKETIIKNNSEIK 443
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1668-1842 |
2.54e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1668 QALQGELEAALEAKEALSRLLADQErrhsQALEALQQRLQGAEEAAELQLAELERNVALRE-AEVEDMASRIQEFEAALK 1746
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALE----AELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1747 AKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQ-QPLAAGAAPPELQWLRAQC-ARLSRQLQVLHQRFLR 1824
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDElQDRLEAAEDLARLELRALLeERFAAALGDAVERELR 768
|
170
....*....|....*...
gi 937500814 1825 CQVELDRRQARRATAHTR 1842
Cdd:COG4913 769 ENLEERIDALRARLNRAE 786
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2515-2794 |
2.59e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2515 EVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQREsqsaKALEELRASLETQRAQSSRLCVALKHEQ 2594
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2595 TAKDNLQKELriehSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvhqdTQAHHALLQ 2674
Cdd:TIGR02168 309 ERLANLERQL----EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----ESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2675 KLKEEKSRVVDLQAMLEKvqqqalHSQQQLEAEAQKHCEALRREKERE--LELQRQRDLHKIKQLQQTVRDLESkdEVPG 2752
Cdd:TIGR02168 380 QLETLRSKVAQLELQIAS------LNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEE--ELEE 451
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 937500814 2753 SRLHLGSARRAAGSDADHLREQQRELEAMRQRLLSAARLLTS 2794
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2397-2883 |
2.74e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2397 SSLLSEIQALRAQLRMTHLQNQEKLQHLrtaLTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANS 2476
Cdd:pfam15921 234 SYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2477 VQKL----LAAEQTVVRDLKSDLCESRQ----KSEQLSRSLCEVQQEVLQLRS---MLSSKENELKAALQELESEQGKgR 2545
Cdd:pfam15921 311 QNSMymrqLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTerdQFSQESGNLDDQLQKLLADLHK-R 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2546 ALQSQLEEEQLRHL-QRESQSAKALEELRASLETQRAQSSRLCVALK----------HEQTAKDNLQKELRIEHSRCEAL 2614
Cdd:pfam15921 390 EKELSLEKEQNKRLwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKamksecqgqmERQMAAIQGKNESLEKVSSLTAQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2615 LAQERSQLSELQKDLAAEKsRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHAL------LQKLKEEKSRVVDLQA 2688
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKK-MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVdlklqeLQHLKNEGDHLRNVQT 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2689 MLEKVQQQALHSQQQLEAEAQK------------------HCEALRREKE---RELELQRQRDLH-----KIKQLQQTVR 2742
Cdd:pfam15921 549 ECEALKLQMAEKDKVIEILRQQienmtqlvgqhgrtagamQVEKAQLEKEindRRLELQEFKILKdkkdaKIRELEARVS 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2743 DLESKDEvpgSRLHLGSARRAAGSDADHLREQ-QRELEAMRQRLLSAAR----LLTSF--TSQAVDRTVNDWTSSNEKAV 2815
Cdd:pfam15921 629 DLELEKV---KLVNAGSERLRAVKDIKQERDQlLNEVKTSRNELNSLSEdyevLKRNFrnKSEEMETTTNKLKMQLKSAQ 705
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 2816 MSLLHTLEELKSdLSRPTSSQKKMAAELQFQF------VDVLLKDNVSLTKALSTVTQEKLELSRAVSKLEKLL 2883
Cdd:pfam15921 706 SELEQTRNTLKS-MEGSDGHAMKVAMGMQKQItakrgqIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
127-821 |
3.10e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 127 LELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLnsrraQELALLQSRQQHELELLREQHAREKEevvlrCGQE 206
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQL-----LKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 207 AAELKEklqsemeknAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERA 286
Cdd:TIGR00618 266 RARIEE---------LRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 287 LRNLESHHQAAIEKLRedlQSEHGRCLEDLEFKFKEsEKEKQLELEnlqasyEDLKAQsQEEIRRLWSQLDSARTSRQEL 366
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHS---QEIHIRDAHEVATSIRE-ISCQQHTLT------QHIHTL-QQQKTTLTQKLQSLCKELDIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 367 SELHEQLLARTSRVEDLEQLKQREKTQHESELEqlriYFEKKLRDAEKTYQEdLTLLQQRLQGAREDalLDSVEVGLSCV 446
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQR----YAELCAAAITCTAQC-EKLEKIHLQESAQS--LKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 447 GLEEKPEKgRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPlciqheghvSDRCCVETSALGHEWrlepsegHS 526
Cdd:TIGR00618 479 EQIHLQET-RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPG---------PLTRRMQRGEQTYAQ-------LE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 527 QELPWVhlqgvqDGDLEADTERAARVLGLETEHKVQLSLL---QTELKEEIELLkienRNLYGKLQHETRLKDDLEKVKH 603
Cdd:TIGR00618 542 TSEEDV------YHQLTSERKQRASLKEQMQEIQQSFSILtqcDNRSKEDIPNL----QNITVRLQDLTEKLSEAEDMLA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 604 NLIEDHQKELNNAKQKTELMKQEFQRKETdwkvMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQD 683
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLHLQQCSQE----LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 684 QQAAQILDLErSLTEQQGRLQQLEQDLTSDDALHCSQCgrEPPTAQDGELAALHVKEDCALQ-LMLARSRFLEERKEITE 762
Cdd:TIGR00618 688 EKEQLTYWKE-MLAQCQTLLRELETHIEEYDREFNEIE--NASSSLGSDLAAREDALNQSLKeLMHQARTVLKARTEAHF 764
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 763 KFSAEQDAFLQ-EAQEQHARELQLLQERHQQQLLSVTAELEARHQAAL----GELTASLESKQG 821
Cdd:TIGR00618 765 NNNEEVTAALQtGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdeDILNLQCETLVQ 828
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2405-2679 |
3.27e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2405 ALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRR-QVELLAYKVEQEKCIAGDlQKTLSEEQEKANSVQKLLAA 2483
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAlEDQHGAFLDADIETAAAD-QEQLPSWQSELENLEERLKA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2484 EQTVVRDLKSDLCESRQK-SEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEqgkgraLQSQLEEEQLRHLQRE 2562
Cdd:pfam12128 366 LTGKHQDVTAKYNRRRSKiKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESE------LREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2563 SQSAKALEELRAsletqraqssRLCVALKHEQTAKDNLQKELRIEHSRCEalLAQERSQLSELQKDLAAEKSRTLELSEA 2642
Cdd:pfam12128 440 YRLKSRLGELKL----------RLNQATATPELLLQLENFDERIERAREE--QEAANAEVERLQSELRQARKRRDQASEA 507
|
250 260 270
....*....|....*....|....*....|....*..
gi 937500814 2643 LRHERLLTEQLSQRTQEAcVHQDTQAHHALLQKLKEE 2679
Cdd:pfam12128 508 LRQASRRLEERQSALDEL-ELQLFPQAGTLLHFLRKE 543
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1534-1788 |
3.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1534 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIytrSSEIEELKATIENLQENQKRL 1613
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1614 QKEKAEEIEQLHEVIEKLqhelslmgpvvhevsdsqagslqsellcsqaggPRGQALQGELEAALEAKEA-LSRLLADQE 1692
Cdd:TIGR02169 750 EQEIENVKSELKELEARI---------------------------------EELEEDLHKLEEALNDLEArLSHSRIPEI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1693 RRHSQALEALQQRLqgaeeaaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAE 1772
Cdd:TIGR02169 797 QAELSKLEEEVSRI-------EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
250
....*....|....*.
gi 937500814 1773 LEAVLLALARIRRALE 1788
Cdd:TIGR02169 870 LEELEAALRDLESRLG 885
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1647-1832 |
3.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1647 DSQAGSLQSELlcsQAGGPRGQALQGELEAALEAKEALSRLLADQERR-----HSQALEALQQRLQGAEeAAELQLAELE 1721
Cdd:COG4913 616 EAELAELEEEL---AEAEERLEALEAELDALQERREALQRLAEYSWDEidvasAEREIAELEAELERLD-ASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1722 RNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAppeL 1801
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL---R 768
|
170 180 190
....*....|....*....|....*....|.
gi 937500814 1802 QWLRAQCARLSRQLQVLHQRFLRCQVELDRR 1832
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
717-1483 |
3.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 717 HCSQCGREPPTAQDGELAAlhvKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQhARELQLLQERHQQQLLS 796
Cdd:PTZ00121 1065 HVGQDEGLKPSYKDFDFDA---KEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKK-AEDARKAEEARKAEDAR 1140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 797 VTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADlGALETRHLSSLDSLESCYLSEFQTIREEHRQALELLR 876
Cdd:PTZ00121 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARK 1219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 877 ADFEEQLWKKDSLHQTILTQELEKL--KRKHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKTA--LHEKE 952
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 953 ETLRLQSAQAQpfhQEEKESLSlQLQKKnhqVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKADvNL 1032
Cdd:PTZ00121 1300 EKKKADEAKKK---AEEAKKAD-EAKKK---AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA-EK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1033 SHSERGALQDALRRLlglfGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTLSECA---- 1108
Cdd:PTZ00121 1372 KKEEAKKKADAAKKK----AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkad 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1109 EMSSVAEiSSHMRESFLMSPESVRECEQPIRRVFQSLSlaVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVV 1188
Cdd:PTZ00121 1448 EAKKKAE-EAKKAEEAKKKAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1189 RKHQELLECLKEESAAKAElalELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLEL---ESLRRQLQQAAQEQAALR 1265
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAE---EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkaEEAKKAEEARIEEVMKLY 1601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1266 EECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSAllSQMKILESELEEQLSQHRGCAKQaEAVTAL 1345
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA--EELKKAEEENKIKAAEEAKKAEE-DKKKAE 1678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1346 EQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQPWgprdsqqapldgEVELLQQKLREKLDEF 1425
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI------------KAEEAKKEAEEDKKKA 1746
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 1426 NELAIQKESADRQVLMQEEEIKRLEEmninIRKKVAQLQEEVEKQKNIVKGLEQDKEV 1483
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEE----IRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2393-2659 |
3.78e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 49.67 E-value: 3.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2393 LPDRSSLLSEIQALRAQlrmTHLQNQEKLQHLRTALTS-AEARGSQQEHQLRRQVellaykVEQEKCIAGDLQKTLSEEQ 2471
Cdd:PRK10929 22 APDEKQITQELEQAKAA---KTPAQAEIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2472 EKANSVQKLLAA---EQTVVRDLKSDLCESRQ------KSEQLSRSLCEVQQEVLQLRSMLSSKENELKAalqeleseQG 2542
Cdd:PRK10929 93 DEPRSVPPNMSTdalEQEILQVSSQLLEKSRQaqqeqdRAREISDSLSQLPQQQTEARRQLNEIERRLQT--------LG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2543 KGralQSQLEEEQLRHLQRESQSAKA------LEELRASletQRAQSSRLCVALkheqtakdnLQKelriEHSRCEALLA 2616
Cdd:PRK10929 165 TP---NTPLAQAQLTALQAESAALKAlvdeleLAQLSAN---NRQELARLRSEL---------AKK----RSQQLDAYLQ 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2617 QERSQLSELQK---DLAAEKSRTLE---------LSEALRHERLLTEQLSQRTQE 2659
Cdd:PRK10929 226 ALRNQLNSQRQreaERALESTELLAeqsgdlpksIVAQFKINRELSQALNQQAQR 280
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2500-2692 |
3.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2500 QKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLE--EEQLRHLQRE-SQSAKALEELRASL 2576
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRalEQELAALEAElAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2577 ETQRAQSSRLCVAL-KHEQTAKDNL----------------QKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLEL 2639
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2640 SEALRHER--LLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEK 2692
Cdd:COG4942 180 LAELEEERaaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2370-2644 |
4.32e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2370 LERLEKIIREQGD----LQ---EKSLEHLRLPDR------SSLLSEIQALRAQLRMTHLQNQEKLQHL--RTALTSAEAR 2434
Cdd:TIGR02169 186 IERLDLIIDEKRQqlerLRrerEKAERYQALLKEkreyegYELLKEKEALERQKEAIERQLASLEEELekLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2435 GSQQEHQLRRQVELLAYKVEQEKCIAgdLQKTLSE---EQEKANSVQKLLAAE----QTVVRDLKSDLCESRQKSEQLSR 2507
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLR--VKEKIGEleaEIASLERSIAEKEREledaEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2508 SLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQL--EEEQLRHLQRESQSAKA--------LEELRASLE 2577
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkdYREKLEKLKREINELKReldrlqeeLQRLSEELA 423
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937500814 2578 TQRAQSSRLCVALKHEQTAKDNLQKELRiehsrceallaQERSQLSELQKDLAAEKSRTLELSEALR 2644
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIK-----------KQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-402 |
4.47e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 151 LQKEKETALTELREMLNSRRAQELALLQS-RQQHELELLREQHAREKEEVVLRC----GQEAAELKEKLQSEMEKNAQIV 225
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLtEEISELEKRLEEIEQLLEELNKKIkdlgEEEQLRVKEKIGELEAEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 226 KTLKEDWESEKDLclENLRKELSA---KHQSEMEDLQ----------NQFQKELAEQRAELEKIFQDKNQAERALRNLES 292
Cdd:TIGR02169 308 RSIAEKERELEDA--EERLAKLEAeidKLLAEIEELEreieeerkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 293 HHQAAIEKLrEDLQSEHGRcLEDLEFKFKESEKEKQLELENLQASYEDLKAQ----------SQEEIRRLWSQLDSARTS 362
Cdd:TIGR02169 386 ELKDYREKL-EKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKineleeekedKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 937500814 363 RQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLR 402
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2367-2791 |
5.56e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2367 SSLLERLEKIIREQGDLQEKSLEHLRlpdrsSLLSEIQALRAQLRmTHLQNQEKLQHLRTALTSAEARGSQQEHQLRR-Q 2445
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELK-----ELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKlE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2446 VELLAYKVEQEKCiagDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSS 2525
Cdd:COG4717 123 KLLQLLPLYQELE---ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2526 KENELKAALQELESEQGKGRALQSQLEEeQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKE-- 2603
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgv 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2604 -------LRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACvhQDTQAHHALLQKL 2676
Cdd:COG4717 279 lflvlglLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELL--DRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2677 KEEKSRVvDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKERELELQR-QRDLHKIKQLQQTVRDLESKDEVPGSRL 2755
Cdd:COG4717 357 EELEEEL-QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEElEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*.
gi 937500814 2756 HLGSARRAAGSDADHLREQQRELEAMRQRLLSAARL 2791
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
212-672 |
5.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 212 EKLQSEMEKNAQIVKTLKEDwesekdlcLENLRKELSAKhqSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLE 291
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRR--------IERLEKFIKRT--ENIEELIKEKEKELEEVLREINEISSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 292 SH------HQAAIEKLREDLQSEHGRcLEDLEFKFKESEK---EKQLELENLQASYEDLKA--QSQEEIRRLWSQLDSAR 360
Cdd:PRK03918 228 KEvkeleeLKEEIEELEKELESLEGS-KRKLEEKIRELEErieELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 361 TSRQELSELHEQLLARTSRVEdlEQLKQREKTqhESELEQLRIYFEKKLRDAEKtYQEDLTLLQQRLQGAREDALLDSVE 440
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIE--ERIKELEEK--EERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 441 VGLSCVGLEEKPEKGRKDhvdELEPERHKESLPRFQAELE---ESHRHQLEALESplciqheghVSDRCCVETSALGHEW 517
Cdd:PRK03918 382 TGLTPEKLEKELEELEKA---KEEIEEEISKITARIGELKkeiKELKKAIEELKK---------AKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 518 RLEPSEGHSQELpwvhlqgvqdGDLEADTERAARvlgLETEHKVQLSLLQTELKEEIELLKIEnrnlygklqhetRLKDD 597
Cdd:PRK03918 450 RKELLEEYTAEL----------KRIEKELKEIEE---KERKLRKELRELEKVLKKESELIKLK------------ELAEQ 504
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 598 LEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELR-EKAESEKQTIINKFE 672
Cdd:PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKlDELEEELAELLKELE 580
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-411 |
7.00e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 152 QKEKETALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEvVLRCGQEAAELKEKLQSEmEKNAQIVKTLKED 231
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKA-EEEKKKVEQLKKK 1641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 232 WESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEqraELEKIFQDKNQAERALRNlESHHQAAIEKLREDLQSEHGR 311
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE---EAKKAEEDEKKAAEALKK-EAEEAKKAEELKKKEAEEKKK 1717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 312 CLEdlefkFKESEKEKQLELENLQASYEDLKAQSQEeirrlwsqldsARTSRQELSELHEQLLARTSRVEDLEQLKQRE- 390
Cdd:PTZ00121 1718 AEE-----LKKAEEENKIKAEEAKKEAEEDKKKAEE-----------AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
|
250 260
....*....|....*....|.
gi 937500814 391 KTQHESELEQLRIYFEKKLRD 411
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKD 1802
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1418-1788 |
7.08e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1418 LREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLAST 1497
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1498 LQStldagrcpeppsgsppegPEIQLEVTQRALLRRESEVLDLKEQLEKMKgDLESKNEEILHLNLKLDmqnsQTAVSLR 1577
Cdd:PRK03918 254 KRK------------------LEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYE----EYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1578 ELEEENTSLkviytrSSEIEELKATIENLQenqkrlqkEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSEL 1657
Cdd:PRK03918 311 EIEKRLSRL------EEEINGIEERIKELE--------EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1658 LCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQaLEALQQRLQGAEEaaELQLAELERNVALREAEVEDMASR 1737
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIE--ELKKAKGKCPVCGRELTEEHRKEL 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 937500814 1738 IQEFEAALKAKEATIAERNLEIDALNQRKaahsAELEAVLLALARIRRALE 1788
Cdd:PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKEL----RELEKVLKKESELIKLKE 500
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
205-670 |
8.73e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 8.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 205 QEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLclENLRKELsAKHQSEMEDLQNQfqKELAEQRAELEKIFQDKNQAE 284
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAEL-EELREELEKLEKL--LQLLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 285 RALRNLESHHQAAIEKLRE--DLQSEHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLwsqldsaRTS 362
Cdd:COG4717 146 ERLEELEERLEELRELEEEleELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL-------EEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 363 RQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAredALLDSVEVG 442
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL---ALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 443 LSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQheghvsdRCCVETSALGHEWRLEPS 522
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-------ELLREAEELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 523 EGHSQELpwvhLQGVQDGDLEADTERAARVlgletEHKVQLSLLQTELKEEIELLKIENRNLYGKLQhETRLKDDLEKVK 602
Cdd:COG4717 369 EQEIAAL----LAEAGVEDEEELRAALEQA-----EEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 603 HNL------IEDHQKELNNAKQKTELMK--QEFQRKETDWKVMKEELQREAEEKLTLMLL-----ELREKAESEKQTIIN 669
Cdd:COG4717 439 EELeeleeeLEELREELAELEAELEQLEedGELAELLQELEELKAELRELAEEWAALKLAlelleEAREEYREERLPPVL 518
|
.
gi 937500814 670 K 670
Cdd:COG4717 519 E 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1596-1850 |
1.15e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1596 IEELKATIENLQenqkrLQKEKAEEIEQLHEVIEKLQHELSLMgpvvhevsdsQAGSLQSELlcsqaggprgQALQGELE 1675
Cdd:TIGR02168 195 LNELERQLKSLE-----RQAEKAERYKELKAELRELELALLVL----------RLEELREEL----------EELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1676 AALEAKEALSRLLADQERRHSQA------LEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKE 1749
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELrlevseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1750 ATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVEL 1829
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260
....*....|....*....|.
gi 937500814 1830 DRRQARRATAHTRVPGAHPQP 1850
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKL 430
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2552-2747 |
1.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2552 EEEQLRHLQRESQSAKALEELRASLETQRAQSSRLcvALKHEQTAKDNLQKELRiehsRCEALLAQERSQLSELQKDLAA 2631
Cdd:COG4913 247 AREQIELLEPIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELE----ELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2632 EKSRTLELSEALR---HERL--LTEQLSQRTQEACVHQDTQAH-HALLQKLKEEksrVVDLQAMLEKVQQQALHSQQQLE 2705
Cdd:COG4913 321 LREELDELEAQIRgngGDRLeqLEREIERLERELEERERRRARlEALLAALGLP---LPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 937500814 2706 AEAQKHCEALRREKERELELQRQRDlhkikQLQQTVRDLESK 2747
Cdd:COG4913 398 EELEALEEALAEAEAALRDLRRELR-----ELEAEIASLERR 434
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1673-1839 |
1.23e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1673 ELEAALEAKEALSRLLADQERRHSQALEALQQ-------RLQGAEEAAEL---QLAELERNVALREAEVEDMASRIQEFE 1742
Cdd:COG4913 243 ALEDAREQIELLEPIRELAERYAAARERLAELeylraalRLWFAQRRLELleaELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1743 AALKAKEATIAERNLE-IDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQr 1821
Cdd:COG4913 323 EELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE- 401
|
170
....*....|....*...
gi 937500814 1822 flRCQVELDRRQARRATA 1839
Cdd:COG4913 402 --ALEEALAEAEAALRDL 417
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
168-429 |
1.27e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 168 SRRAQELALLQSRQQHELELLREQHAREKEEVVLRCgqEAAELKEKLqSEMEKNAQIVKTLKEDWESEKDLC-LENLRKE 246
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSL--KAEVLIQKF-GRSLKAKKRFSLLKKETIYLQSAQrVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 247 LSAKHQ-----SEMEDLQNQFQKELAEQRAELEKIFQDKNQAeraLRNLESHHQAAIEKLREDLQSEHGRCLEDLEFKFK 321
Cdd:COG5022 884 LQELKIdvksiSSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLH 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 322 ESEKEkqleLENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTsrvEDLEQLKQREKTQHESELEQL 401
Cdd:COG5022 961 EVESK----LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQ---ESTKQLKELPVEVAELQSASK 1033
|
250 260 270
....*....|....*....|....*....|.
gi 937500814 402 RIYFEKKLRDAEKTYQE---DLTLLQQRLQG 429
Cdd:COG5022 1034 IISSESTELSILKPLQKlkgLLLLENNQLQA 1064
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1345-1790 |
1.41e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1345 LEQQVASLDKHLRNQRQ----------FMDEQAAEREHEREEFQQEIQRLEGQLRQaakpqpwgpRDSQQAPLDGEVELL 1414
Cdd:TIGR04523 80 LEQQIKDLNDKLKKNKDkinklnsdlsKINSEIKNDKEQKNKLEVELNKLEKQKKE---------NKKNIDKFLTEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1415 QQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQE-----EVEKQKNivKGLEQDKEVLKKQQm 1489
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllsnlKKKIQKN--KSLESQISELKKQN- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1490 sslllaSTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQN 1569
Cdd:TIGR04523 228 ------NQLKDNIE--------------KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1570 SQtavsLRELEEENTSLKViYTRSSEIEELKATIENlQENQKR-LQKEKAE---EIEQLHEVIEKLQHELSlmgpvvheV 1645
Cdd:TIGR04523 288 KQ----LNQLKSEISDLNN-QKEQDWNKELKSELKN-QEKKLEeIQNQISQnnkIISQLNEQISQLKKELT--------N 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1646 SDSQAGSLQSELLCSQAggpRGQALQGELEAALEAKEALSRLLADQERRHSQAlEALQQRLQGAEEAAELQLAELERNVA 1725
Cdd:TIGR04523 354 SESENSEKQRELEEKQN---EIEKLKKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 1726 LREAEVEDMASRIQEFeaalkakEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQ 1790
Cdd:TIGR04523 430 RLKETIIKNNSEIKDL-------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1300-1487 |
1.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1300 QSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEA----VTALEQQVASLDKHLRNQRQFMDEQAAEREHERE 1375
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerrIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1376 EFQQEIQRLEGQLRQAAKPQPWGPRD---SQQAPLDG----------------EVELLQQKLREKLDEFNELAIQKESAD 1436
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAvrrlqylkylaparreQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 937500814 1437 RQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQ 1487
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1521-1633 |
1.55e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1521 IQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqnsqtavslRELEEENTSLKviytRSSEIEELK 1600
Cdd:COG2433 406 RELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELS----------EARSEERREIR----KDREISRLD 471
|
90 100 110
....*....|....*....|....*....|...
gi 937500814 1601 ATIENLqenQKRLQKEKaEEIEQLHEVIEKLQH 1633
Cdd:COG2433 472 REIERL---ERELEEER-ERIEELKRKLERLKE 500
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
203-433 |
1.66e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 203 CGQEAAEL---KEKLQSEMEKNAQIVKTLKEDWESEkdlclenlRKELSAKHQSEMEDLQNQFQK--ELAEQRAELEKIF 277
Cdd:pfam07888 39 CLQERAELlqaQEAANRQREKEKERYKRDREQWERQ--------RRELESRVAELKEELRQSREKheELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 278 QDKNQAERALRNLESHHQAAIEKLREDLQSEHGRCLE---DLEfKFKESEKEKQLELENLQASYEDLKA---QSQEEIRR 351
Cdd:pfam07888 111 EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLEretELE-RMKERAKKAGAQRKEEEAERKQLQAklqQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 352 LWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRiyfekklrdaekTYQEDLTLLQQRLQGAR 431
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELR------------SLQERLNASERKVEGLG 257
|
..
gi 937500814 432 ED 433
Cdd:pfam07888 258 EE 259
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1534-1798 |
1.90e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1534 ESEVLDLKEQLEKMKGDLESKNEEILHLNlkldmQNSQTAVSLREleEENTSLKVIYTRSSEIEELKATIENLQENQKRL 1613
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYE-----EQREQARETRD--EADEVLEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1614 QKEK---AEEIEQLHEVIEKLQHELS-LMGPVVHEVSDSQAGSLQSELLCSQAGGPRgQALQGELEAALEAKEALSRLLA 1689
Cdd:PRK02224 271 EREReelAEEVRDLRERLEELEEERDdLLAEAGLDDADAEAVEARREELEDRDEELR-DRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1690 DQERRHSQALEALQQ--RLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKA 1767
Cdd:PRK02224 350 DADDLEERAEELREEaaELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
250 260 270
....*....|....*....|....*....|.
gi 937500814 1768 AHSAELEAvllalARIRRALEQQPLAAGAAP 1798
Cdd:PRK02224 430 ELEATLRT-----ARERVEEAEALLEAGKCP 455
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1201-1788 |
2.07e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1201 ESAAKAELALE--LHKTQGTLEgfkvetaDLKEVLAGKEDSE-HRLVLELESLRRQLQQAAQEQAALREECTRlwSRGEA 1277
Cdd:PRK02224 169 ERASDARLGVErvLSDQRGSLD-------QLKAQIEEKEEKDlHERLNGLESELAELDEEIERYEEQREQARE--TRDEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1278 TATDAEARE-----AALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILEsELEEQLSQHRG-CAKQAEAVTALEQQVAS 1351
Cdd:PRK02224 240 DEVLEEHEErreelETLEAEIEDLRETIAETEREREELAEEVRDLRERLE-ELEEERDDLLAeAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1352 LDKHLRNQRQFMDEQaaerehereefQQEIQRLEGQLRQAAKpqpwgprdsqqapldgEVELLQQKLREKLDEFNELAIQ 1431
Cdd:PRK02224 319 LEDRDEELRDRLEEC-----------RVAAQAHNEEAESLRE----------------DADDLEERAEELREEAAELESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1432 KESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSsllLASTLQST---------- 1501
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE---LEATLRTArerveeaeal 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1502 LDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESkneeilhlnlkldmqnsqtAVSLRELEe 1581
Cdd:PRK02224 449 LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER-------------------AEDLVEAE- 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1582 entslkviyTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELslmgpvvhEVSDSQAGSLQSEllcSQ 1661
Cdd:PRK02224 509 ---------DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA--------EEKREAAAEAEEE---AE 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1662 AGGPRGQALQGELEAALEAKEALSRLLADQERR--HSQALEALQQRLQGAEEAAEL---QLAEL-ERNVALR----EAEV 1731
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIadAEDEIERLREKREALAELNDErreRLAEKrERKRELEaefdEARI 648
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 937500814 1732 EDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAvLLALARIRRALE 1788
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE-LEELRERREALE 704
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
128-366 |
2.13e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 128 ELEALRLSLSNMHTAQLELTQANLQKEKETALTEL---REMLNSRRAQELALLQSRQQHELELLREQHAREKEEVVLRCG 204
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 205 QEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlcLENLRKELSAKHQSEMEDLQNQFQKELAEQraELEKIFQDKNQAE 284
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQ--VERLRQQEEERKRKKLELEKEKRDRKRAEE--QRRKILEKELEER 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 285 RALRNLESHHQAAIEKLREDLQS-----EHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSA 359
Cdd:pfam17380 505 KQAMIEEERKRKLLEKEMEERQKaiyeeERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVES 584
|
....*..
gi 937500814 360 RTSRQEL 366
Cdd:pfam17380 585 EKARAEY 591
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1157-1630 |
2.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1157 LDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLEcLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGK 1236
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK-KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1237 EDSEHRLVLElESLRRQLQQAAQEQAALREEctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLS 1316
Cdd:PTZ00121 1438 KKAEEAKKAD-EAKKKAEEAKKAEEAKKKAE--------EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1317 QMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKpqp 1396
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE--- 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1397 wgPRDSQQAPLDGEVELLQQKLREKLDEfnelaIQKESADRqvlMQEEEIKRLEEmninIRKKVAQLQEEVEKQKnivkg 1476
Cdd:PTZ00121 1586 --AKKAEEARIEEVMKLYEEEKKMKAEE-----AKKAEEAK---IKAEELKKAEE----EKKKVEQLKKKEAEEK----- 1646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1477 lEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNE 1556
Cdd:PTZ00121 1647 -KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 1557 EILHLNL----KLDMQNSQTAVSLRELEEENTSLKviytrSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEK 1630
Cdd:PTZ00121 1726 EENKIKAeeakKEAEEDKKKAEEAKKDEEEKKKIA-----HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
205-712 |
2.19e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 205 QEAAELKEKLQsemEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAE 284
Cdd:TIGR04523 124 VELNKLEKQKK---ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 285 RALRNLESHhqaaIEKLREdLQSEhgrcLEDLEFKFKESEK----------EKQLELENLQASYEDLKAQSQEEIRRLWS 354
Cdd:TIGR04523 201 LLLSNLKKK----IQKNKS-LESQ----ISELKKQNNQLKDniekkqqeinEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 355 QLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQH-ESELEQLriyfEKKLRDAEKTYQEDLTLLQQrlqgared 433
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElKSELKNQ----EKKLEEIQNQISQNNKIISQ-------- 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 434 alldsvevglscvgLEEKPEKGRKDHVD-ELEPERHKESLPRFQAELE------ESHRHQLEALESplciqheghvsdrc 506
Cdd:TIGR04523 340 --------------LNEQISQLKKELTNsESENSEKQRELEEKQNEIEklkkenQSYKQEIKNLES-------------- 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 507 cvETSALghEWRLEPSEGHSQELPwvhlQGVQDGDLEADTeraarvlgLETEHKvQLSLLQTELKEEIELLKIENRNLYG 586
Cdd:TIGR04523 392 --QINDL--ESKIQNQEKLNQQKD----EQIKKLQQEKEL--------LEKEIE-RLKETIIKNNSEIKDLTNQDSVKEL 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 587 KLQHETRLKDDLEKVkhnlIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEElQREAEEKLTLM------LLELREKA 660
Cdd:TIGR04523 455 IIKNLDNTRESLETQ----LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE-KKELEEKVKDLtkkissLKEKIEKL 529
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 937500814 661 ESEKQTIINKfeLREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTS 712
Cdd:TIGR04523 530 ESEKKEKESK--ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKS 579
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
303-1022 |
2.74e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 303 EDLQSEHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVED 382
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 383 LEQLKQREKTQHESELEQLR---------------IYFEKKLRDAEKTYQED-LTLLQQRLQGAREDALLDSVEVGLSCV 446
Cdd:pfam15921 157 AKCLKEDMLEDSNTQIEQLRkmmlshegvlqeirsILVDFEEASGKKIYEHDsMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 447 gleekpeKGRKDHVDELEPERHKESLPRFQAELEEsHRHQLEALESPLCIQHEGHVSDRCCVETSALGHEWRLEPSEGHS 526
Cdd:pfam15921 237 -------KGRIFPVEDQLEALKSESQNKIELLLQQ-HQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 527 QELPWVHLQGVQD-----GDLEADTERAARVLGLETEH-KVQLSLLQTELKE---EIELLKIENRNLYGKLQ------HE 591
Cdd:pfam15921 309 RNQNSMYMRQLSDlestvSQLRSELREAKRMYEDKIEElEKQLVLANSELTEartERDQFSQESGNLDDQLQklladlHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 592 TRLKDDLEKVKHNLIEDHQK----ELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTlmLLELREKAESEKQTI 667
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 668 INKFELREAEMRQLQDQQAAQILDL---ERSLTEQQGRLQQLEQDLtsddalhcsqcgreppTAQDGELAALHVKEDCAL 744
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLessERTVSDLTASLQEKERAI----------------EATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 745 QLMlarsRFLEERKEITEKFSAEQDAF-LQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGAL 823
Cdd:pfam15921 531 QEL----QHLKNEGDHLRNVQTECEALkLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 824 ----------------LAARVAELQTKHA--ADLGALETRHLSSLDSLESCYLSEFQTIREEhrqaLELLRADFE--EQL 883
Cdd:pfam15921 607 qefkilkdkkdakireLEARVSDLELEKVklVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEvlKRN 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 884 WKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRT-EVSTELAGTVAHELQGVHQGEFGseKKTALHEKEETLRLQSAQA 962
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmEGSDGHAMKVAMGMQKQITAKRG--QIDALQSKIQFLEEAMTNA 760
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937500814 963 ---QPFHQEEKESLSLQLQkknhqvqqlkdqvlSLSHEIEECRSELEVLQQRRERENREGANL 1022
Cdd:pfam15921 761 nkeKHFLKEEKNKLSQELS--------------TVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2371-2744 |
3.00e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2371 ERLEKIIREQGDLQEKslehlrlpdRSSLLSEIQALRA--QLRMTHLQNQEKLQHLRTALTSAEARGSQQEH-------- 2440
Cdd:PRK04863 307 YRLVEMARELAELNEA---------ESDLEQDYQAASDhlNLVQTALRQQEKIERYQADLEELEERLEEQNEvveeadeq 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2441 --QLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKA----NSVQKLLAAEQ-TVVRDLKSDLCESRQksEQLSRSLCEVQ 2513
Cdd:PRK04863 378 qeENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyqQAVQALERAKQlCGLPDLTADNAEDWL--EEFQAKEQEAT 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2514 QEVLQLRSMLSSKENE----------LKAALQELESEQGKGRALQSQLEEEQLRHL-QRESQSAKALEELRASLETQRAQ 2582
Cdd:PRK04863 456 EELLSLEQKLSVAQAAhsqfeqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLaEQLQQLRMRLSELEQRLRQQQRA 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2583 SSRLCVALKHEQTAKDNlqkelriehsrcEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERlltEQLSQRTQE-AC 2661
Cdd:PRK04863 536 ERLLAEFCKRLGKNLDD------------EDELEQLQEELEARLESLSESVSEARERRMALRQQL---EQLQARIQRlAA 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2662 VHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALhsqqqleaeaqkhcealrrEKERELELQRQRDLHKIKQLQQTV 2741
Cdd:PRK04863 601 RAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLL-------------------ERERELTVERDELAARKQALDEEI 661
|
...
gi 937500814 2742 RDL 2744
Cdd:PRK04863 662 ERL 664
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-489 |
3.21e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 254 EMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAA----------IEKLREDLQSEHgRCLEDLEFKFKES 323
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLeqeeeklkerLEELEEDLSSLE-QEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 324 EK---EKQLELENLQASYEDLKAQ-SQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKtqheSELE 399
Cdd:TIGR02169 764 EArieELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 400 QLRIYFEKKlRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKpekgRKDHVDELEPERHKESLPRFQAEL 479
Cdd:TIGR02169 840 EQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE----RDELEAQLRELERKIEELEAQIEK 914
|
250
....*....|
gi 937500814 480 EESHRHQLEA 489
Cdd:TIGR02169 915 KRKRLSELKA 924
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
98-491 |
4.37e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 98 EQECELAITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQELALL 177
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 178 QSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDwesekdlclenLRKELSAKHQSEMED 257
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-----------EEEEALLELLAELLE 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 258 LQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELENLQAS 337
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 338 Y------------EDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRiyf 405
Cdd:COG1196 551 IvveddevaaaaiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--- 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 406 EKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRH 485
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
....*.
gi 937500814 486 QLEALE 491
Cdd:COG1196 708 ELAEAE 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
175-390 |
5.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 175 ALLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEK-NAQIVKTLKEDWESEKDLCLENLRKELSAKHQS 253
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKEL-----AALKKEEKALLKQLAAlERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 254 EMEDLQNQFQKELAEQRAELEKI-----------FQDKNQAERALRNLES---HHQAAIEKLREDLQSehgrcLEDLEFK 319
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYlapARREQAEELRADLAE-----LAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 320 FKESEKEKQL---ELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQRE 390
Cdd:COG4942 169 LEAERAELEAllaELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1188-1758 |
5.47e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1188 VRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREE 1267
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1268 CTRLwSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKdrsallsqmkilESELEEQLSQHRGCAKQAEAVTALEQ 1347
Cdd:PRK03918 306 LDEL-REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK------------LKELEKRLEELEERHELYEEAKAKKE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1348 QVASLDKHLRNqrqfmdeqaaerehereefqQEIQRLEGQLRQAAKPQPWGPRDSQQapLDGEVELLQQKLREKLDEFNE 1427
Cdd:PRK03918 373 ELERLKKRLTG--------------------LTPEKLEKELEELEKAKEEIEEEISK--ITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1428 LAIQK----------ESADRQVLMQE--EEIKRLEEMNINIRKKVAQLQEEVEKqknIVKGLEQDKEVLKKQQMSSLL-- 1493
Cdd:PRK03918 431 LKKAKgkcpvcgrelTEEHRKELLEEytAELKRIEKELKEIEEKERKLRKELRE---LEKVLKKESELIKLKELAEQLke 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1494 LASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLK---EQLEKMKGDLESKNEEILHLNLKLDMQns 1570
Cdd:PRK03918 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKkklAELEKKLDELEEELAELLKELEELGFE-- 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1571 qtavSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQ---KEKAEEIEQLHEVIEKLQHELslmgpvvhevsd 1647
Cdd:PRK03918 586 ----SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEeelDKAFEELAETEKRLEELRKEL------------ 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1648 SQAGSLQSEllcsqaggprgqalqGELEAALEAKEALSRLLADQERRhsqaLEALQQRLQGAEEAAELQLAEL-ERNVAL 1726
Cdd:PRK03918 650 EELEKKYSE---------------EEYEELREEYLELSRELAGLRAE----LEELEKRREEIKKTLEKLKEELeEREKAK 710
|
570 580 590
....*....|....*....|....*....|...
gi 937500814 1727 REAEV-EDMASRIQEFEAALKAKEATIAERNLE 1758
Cdd:PRK03918 711 KELEKlEKALERVEELREKVKKYKALLKERALS 743
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2344-2655 |
6.04e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2344 EKEQEMQGVELQPRLSGSDLGGHSSLlERLEKIIREQGDL---QEKSLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEK 2420
Cdd:pfam17380 304 EKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMameRERELERIRQEERKRELERIRQEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2421 LQHLRtaltSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQkLLAAEQTVVRDLKsdlcesRQ 2500
Cdd:pfam17380 383 LQMER----QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-VRRLEEERAREME------RV 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2501 KSEQLSRslcevQQEVLQLRSmlssKENELKAALQELESEQGKgralQSQLEEEQLRHLQREsqsakaLEELRASLETQR 2580
Cdd:pfam17380 452 RLEEQER-----QQQVERLRQ----QEEERKRKKLELEKEKRD----RKRAEEQRRKILEKE------LEERKQAMIEEE 512
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2581 AQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTlelsEALRHERLLTEQLSQ 2655
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL----EAMEREREMMRQIVE 583
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
166-405 |
6.09e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 166 LNSRRAQELALLQSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKE----DWE---SEKDL 238
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvsvkSLEeliKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 239 CLENLRKELSAKHqSEMEDLQNQfQKELAEQRAELEKiFQDKNQAERALRNLESHHQAA----IEKLREDLQSEHGRCLE 314
Cdd:PRK05771 94 ELEKIEKEIKELE-EEISELENE-IKELEQEIERLEP-WGNFDLDLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 315 DLEFK--------------FKESEKE-KQLELENLQASYEDLkaqSQEEIRRLWSQLDSArtsRQELSELHEQLLARTSR 379
Cdd:PRK05771 171 YISTDkgyvyvvvvvlkelSDEVEEElKKLGFERLELEEEGT---PSELIREIKEELEEI---EKERESLLEELKELAKK 244
|
250 260
....*....|....*....|....*.
gi 937500814 380 VEDlEQLKQREKTQHESELEQLRIYF 405
Cdd:PRK05771 245 YLE-ELLALYEYLEIELERAEALSKF 269
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
866-1361 |
6.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 866 EEHRQALELLRADFEEQLWKKDSLHQTIltQELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHELQGV-HQGEFGSEK 944
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELpERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 945 KTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLS 1024
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1025 MLkadvnlshsERGALQDALRRLLGLFGeTLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTL 1104
Cdd:COG4717 235 EL---------EAAALEERLKEARLLLL-IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1105 SECAEMSSVAEISshmresflmspesvrecEQPIRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRfekefsfkneet 1184
Cdd:COG4717 305 EELQALPALEELE-----------------EEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------------ 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1185 aqvvrkhqelleclKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAAL 1264
Cdd:COG4717 356 --------------AEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1265 REECTRlwSRGEATATDAEAREAALRKEVEDLTKEQSETR---KQAEKDRSalLSQmkiLESELEEQLSQHRGCAKQAEA 1341
Cdd:COG4717 422 LEALDE--EELEEELEELEEELEELEEELEELREELAELEaelEQLEEDGE--LAE---LLQELEELKAELRELAEEWAA 494
|
490 500
....*....|....*....|
gi 937500814 1342 VTALEQQVASLDKHLRNQRQ 1361
Cdd:COG4717 495 LKLALELLEEAREEYREERL 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
169-389 |
6.69e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 169 RRAQELALLQSRQQHELELLREQHAREkeevvlrcgQEAAELKEKLQSEMEK-NAQIVKTLKEDWESEkdlcLENLRKEL 247
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERY---------AAARERLAELEYLRAAlRLWFAQRRLELLEAE----LEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 248 sAKHQSEMEDLQNQfQKELAEQRAELEKI-----FQDKNQAERALRNLESHhQAAIEKLREDLQSEhgrcLEDLEFKFKE 322
Cdd:COG4913 305 -ARLEAELERLEAR-LDALREELDELEAQirgngGDRLEQLEREIERLERE-LEERERRRARLEAL----LAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937500814 323 SEK---EKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRV-EDLEQLKQR 389
Cdd:COG4913 378 SAEefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2519-2742 |
6.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2519 LRSMLsskENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKD 2598
Cdd:COG4717 43 IRAML---LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2599 NLQKELRIEHSRCEalLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQeacvhqdtQAHHALLQKLKE 2678
Cdd:COG4717 120 KLEKLLQLLPLYQE--LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQE--------ELEELLEQLSLA 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 2679 EKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKERELELQRQRDLHKIKQLQQTVR 2742
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
575-1018 |
6.83e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 6.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 575 ELLKIENRNlyGKLQHETRLKDDLEKVKHnLIEDHQKELNNAKQKTELMKQEFQRKETDWKvmkeelqreaeeKLTLMLL 654
Cdd:pfam05483 200 EELRVQAEN--ARLEMHFKLKEDHEKIQH-LEEEYKKEINDKEKQVSLLLIQITEKENKMK------------DLTFLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 655 ELREKAES-EKQTIINKFELREAEMRQlqDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALHCSQCgrEPPTAQDGEL 733
Cdd:pfam05483 265 ESRDKANQlEEKTKLQDENLKELIEKK--DHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLT--EEKEAQMEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 734 AALHVKEDCALQLMLARSRFLEERkeitekFSAEQDAFlqEAQEQHARELQLLQERHQQQLLSVTaELEARHQAALGELT 813
Cdd:pfam05483 341 NKAKAAHSFVVTEFEATTCSLEEL------LRTEQQRL--EKNEDQLKIITMELQKKSSELEEMT-KFKNNKEVELEELK 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 814 ASLESKQGALLAAR-----VAELQTKHAADLGALETRHlSSLDSLEsCYLSEFQTIREEHRQALELLRADFEEQLWKKDS 888
Cdd:pfam05483 412 KILAEDEKLLDEKKqfekiAEELKGKEQELIFLLQARE-KEIHDLE-IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 889 L--HQTILTQELEKLKRKHEGELQSVRDHlrtevSTELAGTVAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQP-- 964
Cdd:pfam05483 490 LtaHCDKLLLENKELTQEASDMTLELKKH-----QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDev 564
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937500814 965 -----FHQEEKESLSLQLQKKNHQVQ-------QLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1018
Cdd:pfam05483 565 kckldKSEENARSIEYEVLKKEKQMKilenkcnNLKKQIENKNKNIEELHQENKALKKKGSAENKQ 630
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1413-1831 |
6.87e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1413 LLQQKLREKLDE-FNELAIQKESADRQVLMQEEEIKRLEEMN---INIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1488
Cdd:COG4717 46 MLLERLEKEADElFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1489 MSSLLLAstlqstldagrcpeppSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ 1568
Cdd:COG4717 126 QLLPLYQ----------------ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1569 NSQTAVSLRE-----LEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVH 1643
Cdd:COG4717 190 TEEELQDLAEeleelQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1644 EVSDSQAGSL----------------QSELLCSQAGGPRGQALQGELE--------AALEAKEALSRLLADQERRHSQAL 1699
Cdd:COG4717 270 SLILTIAGVLflvlgllallflllarEKASLGKEAEELQALPALEELEeeeleellAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1700 EALQQRLQGAEEAAELQLAELERNVALREAEVEDmasrIQEFEAALKAKEatiaernlEIDALNQRKAAHSAELEAVLLA 1779
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALLAEAGVED----EEELRAALEQAE--------EYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 937500814 1780 LARIRRALEQQPLAAgaappELQWLRAQCARLSRQLQVLHQRFLRCQVELDR 1831
Cdd:COG4717 418 LEELLEALDEEELEE-----ELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2442-2635 |
6.97e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 6.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2442 LRRQVELLAYKVEqekciagdLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQksEQLSRSLCEVQQEVLQLRS 2521
Cdd:COG4913 247 AREQIELLEPIRE--------LAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL--EELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2522 MLSSKENELKAALQELESEQGKGRA-LQSQLE--EEQLRHLQRESQS-AKALEELRASLETQRAQSSRLCVALKHEQTAK 2597
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIErlERELEERERRRARlEALLAALGLPLPASAEEFAALRAEAAALLEAL 396
|
170 180 190
....*....|....*....|....*....|....*...
gi 937500814 2598 DNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSR 2635
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2334-2745 |
8.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2334 DLLQVVQEAFEKEQEMQGVELQprlsgsdlggHSSLLERLEKIIREQGDLQEKSLEHLRLPDRSSL-LSEIQALRAQLRM 2412
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEA----------EEALLERLERLEEELEELEEALAELEEEEEEEEEaLEEAAEEEAELEE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2413 THLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLK 2492
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2493 SDLCESRqKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQ---------LEEEQLRHLQRES 2563
Cdd:COG1196 537 EAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdLVASDLREADARY 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2564 QSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEAL 2643
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2644 RHERLLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLE-----AEAQKHCEALRRE 2718
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdlEELERELERLERE 775
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 937500814 2719 ------------------KERELELQRQR-DLHK-IKQLQQTVRDLE 2745
Cdd:COG1196 776 iealgpvnllaieeyeelEERYDFLSEQReDLEEaRETLEEAIEEID 822
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1683-1780 |
8.25e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1683 ALSRLLAdQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDAL 1762
Cdd:PRK09039 64 ELADLLS-LERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELL 142
|
90
....*....|....*...
gi 937500814 1763 NQRKAAHSAELEAVLLAL 1780
Cdd:PRK09039 143 NQQIAALRRQLAALEAAL 160
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2527-2798 |
8.38e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2527 ENELKA---ALQELESEQGKGRALQSQLEEeQLRHLQRESQSAKALEELRASLET---QRAQSSRLCVALKheQTAKDNL 2600
Cdd:PRK11281 38 EADVQAqldALNKQKLLEAEDKLVQQDLEQ-TLALLDKIDRQKEETEQLKQQLAQapaKLRQAQAELEALK--DDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2601 QKELRIEHSR-CEALLAQERSQLSELQKDLAAEKSRTLELSEALrhERLLTE--QLSQRTQEAcvhqdtqahHALLQKLK 2677
Cdd:PRK11281 115 RETLSTLSLRqLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP--ERAQAAlyANSQRLQQI---------RNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2678 EEKSRVVDLQAMLekvqqqalhsqqqLEAEaQKHCEALRREKERELE--------LQRQRDL--HKIKQLQQTVRDLEsk 2747
Cdd:PRK11281 184 VGGKALRPSQRVL-------------LQAE-QALLNAQNDLQRKSLEgntqlqdlLQKQRDYltARIQRLEHQLQLLQ-- 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937500814 2748 DEVPGSRLHLG--------SARRAAGSDADHLreQQRELEAMRQ---RLLSAARLLTSFTSQ 2798
Cdd:PRK11281 248 EAINSKRLTLSektvqeaqSQDEAARIQANPL--VAQELEINLQlsqRLLKATEKLNTLTQQ 307
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
196-682 |
8.48e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 196 KEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEdwesekdlcLENLRKELSakhqsEMEDLQNqfqkELAEQRAELEK 275
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREE---------LEKLEKEVK-----ELEELKE----EIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 276 IFQDKNQAERALRNLESHHQAAIEKLRE------DLQSEHGRCLEDLEF-KFKESEKEKQLELENLQASYEDLKAQSQEE 348
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLsEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 349 IRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKtqhesELEQLRiyfeKKLRDAEKtyqEDLTLLQQRLQ 428
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-----ELERLK----KRLTGLTP---EKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 429 GAREDALLDSVEVGLSCVGLEEKpEKGRKDHVDELEPERHKesLPRFQAELEESHRHQL--------EALESPL--CIQH 498
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKE-IKELKKAIEELKKAKGK--CPVCGRELTEEHRKELleeytaelKRIEKELkeIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 499 EGHVSDRCCVETSALGHEWRLEPSEGHSQELPWVH--LQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTELkEEIEL 576
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEekLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 577 LKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTElmkqEFQRKETDWKVMKEELQREaEEKLTLMLLEL 656
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELE----PFYNEYLELKDAEKELERE-EKELKKLEEEL 628
|
490 500
....*....|....*....|....*.
gi 937500814 657 rEKAESEKQTIINKFELREAEMRQLQ 682
Cdd:PRK03918 629 -DKAFEELAETEKRLEELRKELEELE 653
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
272-1042 |
8.63e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 272 ELEKIFQDKNQAERALRNLEShhqaaIEKLREDLQSEHGRCleDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRR 351
Cdd:TIGR00606 170 ALKQKFDEIFSATRYIKALET-----LRQVRQTQGQKVQEH--QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKS 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 352 LWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLK-QREKTQHESELEQLRIYF--EKKLRDAE-------KTYQEDLT 421
Cdd:TIGR00606 243 YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKkQMEKDNSELELKMEKVFQgtDEQLNDLYhnhqrtvREKERELV 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 422 LLQQRLQGAREDALLDS-------VEVGLSCVGLEEKPEKGRKDHVDELEPERHKE-----SLPRFQAELEESHRHQLEA 489
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNqektellVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfeRGPFSERQIKNFHTLVIER 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 490 LE------SPLCIQHEGHVS------DRCCVETSALGHEWRLEPS--EGHSQELPWVHLQGVQ-----DGDLEADTE--R 548
Cdd:TIGR00606 403 QEdeaktaAQLCADLQSKERlkqeqaDEIRDEKKGLGRTIELKKEilEKKQEELKFVIKELQQlegssDRILELDQElrK 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 549 AARVLGLETEHkvqlSLLQTELKEEIEL----------LKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQ 618
Cdd:TIGR00606 483 AERELSKAEKN----SLTETLKKEVKSLqnekadldrkLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 619 KTELMKQ----EFQRKETDWKVMKEELQREAEEKLTLMLLELrEKAESEKQTIINKFELREAEMRQLQDQ--QAAQILDL 692
Cdd:TIGR00606 559 SDELTSLlgyfPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL-ASLEQNKNHINNELESKEEQLSSYEDKlfDVCGSQDE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 693 ERSLTEQQGRLQQLEQDLTSDDAlhcsqcgrePPTAQDGELAALHVKEDCALQLMlarSRFLEERKEITEKFSAEQDAFL 772
Cdd:TIGR00606 638 ESDLERLKEEIEKSSKQRAMLAG---------ATAVYSQFITQLTDENQSCCPVC---QRVFQTEAELQEFISDLQSKLR 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 773 QEAQEQHARELQLLQERHQQQLLSVTAELEA----RHQAALGELTASLESkqgalLAARVAELQTKHAADLGALETRhLS 848
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQsiidLKEKEIPELRNKLQK-----VNRDIQRLKNDIEEQETLLGTI-MP 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 849 SLDSLESCYLSefQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLrtevstELAGTV 928
Cdd:TIGR00606 780 EEESAKVCLTD--VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKI------ELNRKL 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 929 AHELQgvHQGEFGSEKKTALHEKEETLRLQSAQAQPFhQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVL 1008
Cdd:TIGR00606 852 IQDQQ--EQIQHLKSKTNELKSEKLQIGTNLQRRQQF-EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
810 820 830
....*....|....*....|....*....|....
gi 937500814 1009 QQRRERENREGANLLSMLKADVNLSHSERGALQD 1042
Cdd:TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
606-823 |
8.77e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 606 IEDHQKELNNAKQ--KTELMKQEFQRKEtdwkvmKEELQREAEEKLTLMLLELREKAESEKQTIIN-------------- 669
Cdd:pfam17380 277 IVQHQKAVSERQQqeKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAEMDRQAAIYaeqermamererel 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 670 ---KFELREAEMRQLQDQQAA----QILDLERSLTEQQGRLQQLEQDLTSDDALHCSQCGRE-PPTAQDGELAALHVKED 741
Cdd:pfam17380 351 eriRQEERKRELERIRQEEIAmeisRMRELERLQMERQQKNERVRQELEAARKVKILEEERQrKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 742 CALQLML-----ARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLS------VTAELEARHQAALG 810
Cdd:pfam17380 431 EARQREVrrleeERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEeqrrkiLEKELEERKQAMIE 510
|
250
....*....|....*....
gi 937500814 811 E------LTASLESKQGAL 823
Cdd:pfam17380 511 EerkrklLEKEMEERQKAI 529
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
2462-2779 |
9.25e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 9.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2462 DLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDL---CESRQKSEQLSRSL-----------CEVQQEVLQLRSMLSSKE 2527
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLegestdlqeqiAELQAQIAELRAQLAKKE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2528 NELKAALQELESEQGKGRALQSQLEE--EQLRHLQRESQSAKAleeLRASLETQRAQSSRLCVALKHE---QTAKDNLQK 2602
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIREleAQISELQEDLESERA---ARNKAEKQRRDLGEELEALKTEledTLDTTAAQQ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2603 ELRiehsrceallAQERSQLSELQKDLAAEKsrtlelsealrherllteqlsqRTQEACVHQDTQAHHALLQKLKEEKSR 2682
Cdd:pfam01576 320 ELR----------SKREQEVTELKKALEEET----------------------RSHEAQLQEMRQKHTQALEELTEQLEQ 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2683 VVDLQAMLEKVQQQALHSQQQLEAEAqkhcealrrekeRELELQRQRDLHKIKQLQQTVRDLESKdevpgsrlhLGSARR 2762
Cdd:pfam01576 368 AKRNKANLEKAKQALESENAELQAEL------------RTLQQAKQDSEHKRKKLEGQLQELQAR---------LSESER 426
|
330
....*....|....*..
gi 937500814 2763 AAGSDADHLREQQRELE 2779
Cdd:pfam01576 427 QRAELAEKLSKLQSELE 443
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
96-628 |
9.76e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 96 ECEQECELAITDLESG-REDEAGLHQSQAV--HGLELEALRLSLSNMHTAQLELTQAN-------LQKEKETALTELREM 165
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKmRSRAKLLMKRAAHvkQQSSIEEQRRLLQTLHSQEIHIRDAHevatsirEISCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 166 LNSRRAQELALLQSRQQHELELLREQH---AREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLEN 242
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQAtidTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 243 LRKELSAKHQSEmEDLQNQFQKElAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLreDLQSEHGRCLEDLEFKFKE 322
Cdd:TIGR00618 464 SAQSLKEREQQL-QTKEQIHLQE-TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI--DNPGPLTRRMQRGEQTYAQ 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 323 sekekqlelenLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHE-----------------------QLLARTSR 379
Cdd:TIGR00618 540 -----------LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQcdnrskedipnlqnitvrlqdltEKLSEAED 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 380 VEDLEQLKQREKTQHESELEQLRIY---FEKKLRDAEKT-YQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKG 455
Cdd:TIGR00618 609 MLACEQHALLRKLQPEQDLQDVRLHlqqCSQELALKLTAlHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 456 RKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLC-----IQHEGHVSDRCCVETSALGHEW---RLEPSEGHSQ 527
Cdd:TIGR00618 689 KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSslgsdLAAREDALNQSLKELMHQARTVlkaRTEAHFNNNE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 528 ELPWVHLQGVQDGDLEADTERAARVL-GLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLI 606
Cdd:TIGR00618 769 EVTAALQTGAELSHLAAEIQFFNRLReEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
570 580
....*....|....*....|..
gi 937500814 607 EDHQKELNNAKQKTELMKQEFQ 628
Cdd:TIGR00618 849 HQLLKYEECSKQLAQLTQEQAK 870
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1152-1634 |
1.02e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1152 LMEMALDSSRQLEEARQIHSRFEKEFsfkNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKE 1231
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDENLKEL---IEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1232 VLAGKEDSEHRLVLELESlrrqlqQAAQEQAALREECTRLwsrgeatatdaEAREAALRKEVEDLTKEQSETRKQAE--K 1309
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEA------TTCSLEELLRTEQQRL-----------EKNEDQLKIITMELQKKSSELEEMTKfkN 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1310 DRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLR 1389
Cdd:pfam05483 402 NKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1390 QAAKPQPWGPRDSQQAPLDGEvELLQqklrEKLDEFNELAIQKESADRQVLMQE---EEIKRLEEMNINIRKKVAQLQEE 1466
Cdd:pfam05483 482 KEKLKNIELTAHCDKLLLENK-ELTQ----EASDMTLELKKHQEDIINCKKQEErmlKQIENLEEKEMNLRDELESVREE 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1467 VEKQKNIVKgLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEI-QLEVTQRALLRR---ESEVLDLKE 1542
Cdd:pfam05483 557 FIQKGDEVK-CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIeELHQENKALKKKgsaENKQLNAYE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1543 -QLEKMKGDLESKNEEILHLnlkldMQNSQTAVSLRELEEENTslkviytrSSEIEELKATIENLQENQKRLQKEKAEEI 1621
Cdd:pfam05483 636 iKVNKLELELASAKQKFEEI-----IDNYQKEIEDKKISEEKL--------LEEVEKAKAIADEAVKLQKEIDKRCQHKI 702
|
490
....*....|...
gi 937500814 1622 EQLHEVIEKLQHE 1634
Cdd:pfam05483 703 AEMVALMEKHKHQ 715
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1524-1638 |
1.20e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1524 EVTQRALLRRESEVLDLKEQLEKmkgDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL----KVIYTRSSEIEEL 1599
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEK---ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELekkeKELEQKQQELEKK 129
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 937500814 1600 KATIENLQENQKR-------LQKEKAEEIeQLHEVIEKLQHELSLM 1638
Cdd:PRK12704 130 EEELEELIEEQLQelerisgLTAEEAKEI-LLEKVEEEARHEAAVL 174
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
584-715 |
1.28e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 584 LYGKLQHETRLKDDLEKVKHnLIEDHQKELNNAKQKTEL-MKQEFQRK----ETDWKVMKEELQReAEEKLtlmllELRE 658
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKR-ILEEAKKEAEAIKKEALLeAKEEIHKLrnefEKELRERRNELQK-LEKRL-----LQKE 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937500814 659 KAESEKQTIINK----FELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQdLTSDDA 715
Cdd:PRK12704 96 ENLDRKLELLEKreeeLEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG-LTAEEA 155
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2415-2844 |
1.28e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2415 LQNQ-EKLQhlRTALTSAEARGSQQEhqLRRQVELLAyKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAeqtvvrdLKS 2493
Cdd:PRK11281 41 VQAQlDALN--KQKLLEAEDKLVQQD--LEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEA-------LKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2494 DLCESRQKSEQlSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELR 2573
Cdd:PRK11281 109 DNDEETRETLS-TLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2574 ASLETQRAQssrlcvaLKHEQTAKdNLQKELRiehsrceALLAQERSQLSEL---QKDLAAEKSRTLE-----LSEALRH 2645
Cdd:PRK11281 188 ALRPSQRVL-------LQAEQALL-NAQNDLQ-------RKSLEGNTQLQDLlqkQRDYLTARIQRLEhqlqlLQEAINS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2646 ERLlteQLSQRT-QEACVHQDTQA--HHALLQKlkeeksrvvdlqamlekvqqqalhsqqqlEAEA-QKHCEALRREKER 2721
Cdd:PRK11281 253 KRL---TLSEKTvQEAQSQDEAARiqANPLVAQ-----------------------------ELEInLQLSQRLLKATEK 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2722 ELELQrQRDLhKIKQ----LQQTVRDLESKDEV-PGSRL-------------HLGSARRAAGSDADhLREQQRELEAMRQ 2783
Cdd:PRK11281 301 LNTLT-QQNL-RVKNwldrLTQSERNIKEQISVlKGSLLlsrilyqqqqalpSADLIEGLADRIAD-LRLEQFEINQQRD 377
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2784 RLLS----AARLLTSfTSQAVDRTVNDwtssnekAVMSLLHTLEELKSDLSRPTSSQKKMAAELQ 2844
Cdd:PRK11281 378 ALFQpdayIDKLEAG-HKSEVTDEVRD-------ALLQLLDERRELLDQLNKQLNNQLNLAINLQ 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1277-1491 |
1.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1277 ATATDAEAREAALRKEVEDLTKEQSETRK---QAEKDRSALLSQMKILE---SELEEQLSQHRGCAKQAEA-VTALEQQV 1349
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKelaALKKEEKALLKQLAALErriAALARRIRALEQELAALEAeLAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1350 ASLDKHLRNQRQFMDEQAAEREHEREE-----------FQQEIQRLE--GQLRQAAKPQPWGPRDSQQApLDGEVELLQQ 1416
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRADLAE-LAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 1417 KLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1491
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1144-1776 |
1.47e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1144 SLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQV--------------VRKHQELLECLKEESAAKAELA 1209
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdelngelsaadaaVAKDRSELEALEDQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1210 LE-LHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLR--------RQLQQAAQEQAALREECTRLwsrGEATAT 1280
Cdd:pfam12128 339 IEtAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRskikeqnnRDIAGIKDKLAKIREARDRQ---LAVAED 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1281 DAEAREAALRKEVEDLTKEQSETRKQAEKDRSAL---LSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLR 1357
Cdd:pfam12128 416 DLQALESELREQLEAGKLEFNEEEYRLKSRLGELklrLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1358 NQRQFMDEQAAEREHEREEFQQEIQRLEgQLRQAAKPQPWGPRD--SQQAPL----DGEVELLQQKLREKLD-EFNELAI 1430
Cdd:pfam12128 496 QARKRRDQASEALRQASRRLEERQSALD-ELELQLFPQAGTLLHflRKEAPDweqsIGKVISPELLHRTDLDpEVWDGSV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1431 QKESADRQVLMqeeeikRLEEMNINirkKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEP 1510
Cdd:pfam12128 575 GGELNLYGVKL------DLKRIDVP---EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFAR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1511 PSGSPPEGPEIQLEVTQRALLRRESEVL-DLKEQLEKMKGDLEsKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVI 1589
Cdd:pfam12128 646 TALKNARLDLRRLFDEKQSEKDKKNKALaERKDSANERLNSLE-AQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1590 YTRSSEIEELKATIENLQENQKRLQKEKAEEIEQlhevieklqhELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQA 1669
Cdd:pfam12128 725 GALDAQLALLKAAIAARRSGAKAELKALETWYKR----------DLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEV 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1670 LQGEL---EAALEAKEALSRLLADQERrhsqALEALQQRLQGAEEAAELQLAELERNV-ALREAEVE---------DMAS 1736
Cdd:pfam12128 795 LRYFDwyqETWLQRRPRLATQLSNIER----AISELQQQLARLIADTKLRRAKLEMERkASEKQQVRlsenlrglrCEMS 870
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 937500814 1737 RIQEFEAALKAKEA--TIAERNleiDALNQRKAAHSAELEAV 1776
Cdd:pfam12128 871 KLATLKEDANSEQAqgSIGERL---AQLEDLKLKRDYLSESV 909
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1413-1635 |
1.53e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1413 LLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMN-INIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1491
Cdd:PHA02562 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNgENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1492 LLLASTLQStLDAGRCPEPPSGSPPEGPEIQLE-------VTQrALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLK 1564
Cdd:PHA02562 251 EDPSAALNK-LNTAAAKIKSKIEQFQKVIKMYEkggvcptCTQ-QISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 1565 LDMQNSQTaVSLRELEeentslkviytrsSEIEELKATIENLQENQKRLQKekaeEIEQLH-------EVIEKLQHEL 1635
Cdd:PHA02562 329 MDEFNEQS-KKLLELK-------------NKISTNKQSLITLVDKAKKVKA----AIEELQaefvdnaEELAKLQDEL 388
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1617-1765 |
1.59e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1617 KAEEIEQLHEVIEKLQHELSLmgpvvhevSDSQAGSLQSELlcsqaggprgqalqGELEAALEAKEALSRLLADQERRHS 1696
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSL--------ERQGNQDLQDSV--------------ANLRASLSAAEAERSRLQALLAELA 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937500814 1697 QALEALQQRLQ--GAEEAAELQL-AELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQR 1765
Cdd:PRK09039 109 GAGAAAEGRAGelAQELDSEKQVsARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2368-2881 |
1.70e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2368 SLLERLEKIIREQGDLQEKSLEHLR-LPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQV 2446
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIEsSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2447 ELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSK 2526
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2527 EnELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKA-LEELRASLETQRAQSSRLCVAL-KHEQTAKDNLQKEL 2604
Cdd:pfam02463 390 A-KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEiLEEEEESIELKQGKLTEEKEELeKQELKLLKDELELK 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2605 RIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAC-VHQDTQAHHALLQKLKEEKSRV 2683
Cdd:pfam02463 469 KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIsAHGRLGDLGVAVENYKVAISTA 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2684 VDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKERELELQRQRDLHKIKQLQQTVRDLESKDEVpgsRLHLGSARRA 2763
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA---DEDDKRAKVV 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2764 AGSDADHLREQQRELEAMRQRLLSAARLLTSFTSQAVDRTVNDWTSSNEKAVMSLLHTLEELKSDLSRPTSSQKKMAAEL 2843
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
490 500 510
....*....|....*....|....*....|....*...
gi 937500814 2844 QfQFVDVLLKDNVSLTKALSTVTQEKLELSRAVSKLEK 2881
Cdd:pfam02463 706 Q-REKEELKKLKLEAEELLADRVQEAQDKINEELKLLK 742
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2499-2660 |
2.16e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2499 RQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKA---------ALQELESEQGKGRALQSQLE--EEQLRHLQRESQSAK 2567
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDAlqerrealqRLAEYSWDEIDVASAEREIAelEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2568 ALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEalrHER 2647
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA---VER 765
|
170
....*....|...
gi 937500814 2648 LLTEQLSQRTQEA 2660
Cdd:COG4913 766 ELRENLEERIDAL 778
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
250-488 |
2.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 250 KHQSEMEDLQNQFQKELAEQraelEKIFQDKNQAERAL------------RNLESHHQAAIEKLREDLQSEHGRCLEDLE 317
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQ----ERLRQEKEEKAREVerrrkleeaekaRQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 318 fkfkesEKEKQLELENLQASYEDLKAQSQEEIRRLwsqldsaRTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESE 397
Cdd:pfam17380 355 ------QEERKRELERIRQEEIAMEISRMRELERL-------QMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 398 LEQLRiyfekklRDAEKTYQEDLTLLQQRLQGAREDALLDSVEvglscvgLEEKPEKGRKDHVDELEPERHKESLPRFQA 477
Cdd:pfam17380 422 MEQIR-------AEQEEARQREVRRLEEERAREMERVRLEEQE-------RQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250
....*....|.
gi 937500814 478 ELEESHRHQLE 488
Cdd:pfam17380 488 RAEEQRRKILE 498
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1293-1827 |
2.27e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1293 VEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLD---KHLRNQRQFMD--EQA 1367
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEklLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1368 AEREHEREEFQQEIQRLEGQLRQA-AKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQK-ESADRQVLMQEEE 1445
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1446 IKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlkKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV 1525
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERL--KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1526 TQRALLRRESEVLDLKEQLEKMKGDLESKNeeilhlnlkLDMQNSQTAVSLRELEEENTSlkviytrsSEIEELKATIEN 1605
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEE---------LEEEELEELLAALGLPPDLSP--------EELLELLDRIEE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1606 LQENQKRLQKEKAE-EIEQLHEVIEKLQHElslmgpvvhevsdsqagslqsellcsqaggprgqalqgeleAALEAKEAL 1684
Cdd:COG4717 349 LQELLREAEELEEElQLEELEQEIAALLAE-----------------------------------------AGVEDEEEL 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1685 SRLLADQERRhsqalEALQQRLQGAEEaaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEAtiaernlEIDALNQ 1764
Cdd:COG4717 388 RAALEQAEEY-----QELKEELEELEE--QLEELLGELEELLEALDEEELEEELEELEEELEELEE-------ELEELRE 453
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937500814 1765 RkaahsaeleavllaLARIRRALEQqpLAAGAappELQWLRAQCARLSRQLQVLHQRFLRCQV 1827
Cdd:COG4717 454 E--------------LAELEAELEQ--LEEDG---ELAELLQELEELKAELRELAEEWAALKL 497
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1594-1786 |
2.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1594 SEIEELKATIENLQENQKRLQKEKAE---EIEQLHEVIEKLQHELSLMGpvvHEVSDSQAgslqsellcsqaggpRGQAL 1670
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAAleaRLEAAKTELEDLEKEIKRLE---LEIEEVEA---------------RIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1671 QGELEAALEAKE--ALSRLLADQERRHSQaLEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAk 1748
Cdd:COG1579 79 EEQLGNVRNNKEyeALQKEIESLKRRISD-LEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA- 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 937500814 1749 eatiaernlEIDALNQRKAAHSAELEAVLLAL-ARIRRA 1786
Cdd:COG1579 157 ---------ELEELEAEREELAAKIPPELLALyERIRKR 186
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
95-368 |
2.75e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 95 KECEQECELAITDLESGREDEAGLHQSQAvhglELEALRLSLSNMhTAQLELTQANLQKEKETALTELREMLNSRRAQEL 174
Cdd:PRK11281 52 KLLEAEDKLVQQDLEQTLALLDKIDRQKE----ETEQLKQQLAQA-PAKLRQAQAELEALKDDNDEETRETLSTLSLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 175 ALLQSRQQHELELLREQHAREKEEVVlrcGQEAAelKEKLQSEMEKNA----QIVKTLKEDWESEKDLCLEnLRKELSAk 250
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLV---SLQTQ--PERAQAALYANSqrlqQIRNLLKGGKVGGKALRPS-QRVLLQA- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 251 hQSEMEDLQNQFQKELAEQRAELekifQDKNQAERALRNLeshHQAAIEKLREDLQSE-HGRCLEDLEFKFKESEKEKQL 329
Cdd:PRK11281 200 -EQALLNAQNDLQRKSLEGNTQL----QDLLQKQRDYLTA---RIQRLEHQLQLLQEAiNSKRLTLSEKTVQEAQSQDEA 271
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 937500814 330 -----------ELE-NLQAS------YEDLKAQSQEEIrRLWSQLDSARTSRQELSE 368
Cdd:PRK11281 272 ariqanplvaqELEiNLQLSqrllkaTEKLNTLTQQNL-RVKNWLDRLTQSERNIKE 327
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2344-2750 |
3.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2344 EKEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLPDRSSLLSEIQALRAQLRmthlQNQEKLQH 2423
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA----ELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2424 LRTALtsaeargsQQEHQLRRQVEllaykveqekciagDLQKTLSEEQEKANSVQKLLAAEQtvvrdlksdlcesRQKSE 2503
Cdd:COG4717 151 LEERL--------EELRELEEELE--------------ELEAELAELQEELEELLEQLSLAT-------------EEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2504 QLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQsqlEEEQLRHLQRESQSAKALEELRASLETQRAQS 2583
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA---LEERLKEARLLLLIAAALLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2584 SRL------------CVALKHEQTAKDNLQKELRIEHSRCEALLAQER--SQLSELQKDLAAEKSRTLELSEALRHERLL 2649
Cdd:COG4717 273 LTIagvlflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEEEleELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2650 TEQLSQRTQEACVHQDTQAHHALL------------------QKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKH 2711
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALLaeagvedeeelraaleqaEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430
....*....|....*....|....*....|....*....
gi 937500814 2712 CEALRREKERELELQRQRDLHKIKQLQQTVRDLESKDEV 2750
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2489-2750 |
3.35e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2489 RDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQsaka 2568
Cdd:TIGR04523 214 KSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQ---- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2569 LEELRASLETQRAQ-SSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHER 2647
Cdd:TIGR04523 290 LNQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2648 LLTEQLSQRTQEacvhqdtqahhaLLQKLKEEKSRVVDLQAMLEKVqqqalhsqQQLEAEAQKHCEALRREKErELELQR 2727
Cdd:TIGR04523 370 NEIEKLKKENQS------------YKQEIKNLESQINDLESKIQNQ--------EKLNQQKDEQIKKLQQEKE-LLEKEI 428
|
250 260
....*....|....*....|...
gi 937500814 2728 QRDLHKIKQLQQTVRDLESKDEV 2750
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSV 451
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2418-2779 |
3.61e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2418 QEKLQHLRTALTSAEARGSQQEHQ---LRRQVELLAYKVEQEKCIA----GDLQKTLSEEQEKANSVQKLLAAEQTVVRD 2490
Cdd:PRK04863 843 NRRRVELERALADHESQEQQQRSQleqAKEGLSALNRLLPRLNLLAdetlADRVEEIREQLDEAEEAKRFVQQHGNALAQ 922
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2491 LKSDLCESRQKSEQLSRslceVQQEVLQLRSMLSSKENELKA-----------ALQELESEQGKGRALQSQLEEeqlRHL 2559
Cdd:PRK04863 923 LEPIVSVLQSDPEQFEQ----LKQDYQQAQQTQRDAKQQAFAltevvqrrahfSYEDAAEMLAKNSDLNEKLRQ---RLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2560 QRESQSAKALEELRASlETQRAQSSRLCVALKHEQTAKDNLQKELriehsrceallAQERSQLSeLQKDLAAEK---SRT 2636
Cdd:PRK04863 996 QAEQERTRAREQLRQA-QAQLAQYNQVLASLKSSYDAKRQMLQEL-----------KQELQDLG-VPADSGAEErarARR 1062
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2637 LELSEALRHERLLTEQLsQRTQEACvhqdTQAHHALLQKLKEEKSrvvDLQAMLEKVqqqalhsqqqLEAEAQKhCEALR 2716
Cdd:PRK04863 1063 DELHARLSANRSRRNQL-EKQLTFC----EAEMDNLTKKLRKLER---DYHEMREQV----------VNAKAGW-CAVLR 1123
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937500814 2717 REKERELElqrqRDLHKikqlqqtvRDLE--SKDEVPGSRLHLGSARRAAGSDADHLREQQRELE 2779
Cdd:PRK04863 1124 LVKDNGVE----RRLHR--------RELAylSADELRSMSDKALGALRLAVADNEHLRDVLRLSE 1176
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2481-2660 |
3.74e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2481 LAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLeEEQLRHLQ 2560
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-GERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2561 RESQSAKALEEL-----------RAS-LETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKD 2628
Cdd:COG3883 97 RSGGSVSYLDVLlgsesfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190
....*....|....*....|....*....|..
gi 937500814 2629 LAAEKSRTLELSEALRHERLLTEQLSQRTQEA 2660
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2529-2749 |
3.76e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2529 ELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVA-LKHEQTAKDNLQKELRIE 2607
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2608 HSRCEALLAQERSQLSELQKDLA----AEKSRTLELSEALRHERLLTEQLSQRTQEacvhqdTQAHHALLQKLKEEKSRV 2683
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKenkeEEKEKKLQEEELKLLAKEEEELKSELLKL------ERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937500814 2684 VDLQAMLEKVQQQALHSQQQL-EAEAQKHCEALRREKERELELQRQRDLHKIKQLQQTVRDLESKDE 2749
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1412-1821 |
4.24e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1412 ELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEmniNIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1491
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDRE---QWERQRRELESRVAELKEELRQSREKHEELEEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1492 LLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLesKNEEILHLNLKLDMQNSq 1571
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQR--KEEEAERKQLQAKLQQT- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1572 tavslrelEEENTSLkviytrSSEIEELKAtienlqenqkrLQKEKAEEIEQLHEVIEKLQHELSlmgpvvhevsDSQAG 1651
Cdd:pfam07888 184 --------EEELRSL------SKEFQELRN-----------SLAQRDTQVLQLQDTITTLTQKLT----------TAHRK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1652 SLQSELLCSQAggprgQALQGELEAALEAKEALSRLLAD--QERRHSQAlEALQQRLQgaeeAAELQLAELERNVALREA 1729
Cdd:pfam07888 229 EAENEALLEEL-----RSLQERLNASERKVEGLGEELSSmaAQRDRTQA-ELHQARLQ----AAQLTLQLADASLALREG 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1730 E-------------VEDMASRIQEFEAALKAKEATIAERNLEIDALnqrKAAHSAELEAVLLALARIRRALEQQPLAAGA 1796
Cdd:pfam07888 299 RarwaqeretlqqsAEADKDRIEKLSAELQRLEERLQEERMEREKL---EVELGREKDCNRVQLSESRRELQELKASLRV 375
|
410 420
....*....|....*....|....*
gi 937500814 1797 APPELQWLRAQCARLSRQLQVLHQR 1821
Cdd:pfam07888 376 AQKEKEQLQAEKQELLEYIRQLEQR 400
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
191-817 |
4.58e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 191 QHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCleNLRKELSAKHQSEMedlqnqfqKELAEQR 270
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLC--NLLKETCARSAEKT--------KKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 271 AELEKIFQDKNQaeralrNLESHhQAAIEKLRedLQSEHGRCleDLEFKFKES-------EKEKQLELENLQASYEDLKA 343
Cdd:pfam05483 179 EETRQVYMDLNN------NIEKM-ILAFEELR--VQAENARL--EMHFKLKEDhekiqhlEEEYKKEINDKEKQVSLLLI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 344 QSQEEIRRLWSQLDSARTSRQELSELHEQllartSRVEDlEQLKQREKTQHE--SELEQLRIYFEKKLrDAEKTYQEDL- 420
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEK-----TKLQD-ENLKELIEKKDHltKELEDIKMSLQRSM-STQKALEEDLq 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 421 ----TLLQ---------QRLQGAREDALLDSVEVGLSCVGLEE--KPEKGR----KDHVDELEPERHKESlprfqAELEE 481
Cdd:pfam05483 321 iatkTICQlteekeaqmEELNKAKAAHSFVVTEFEATTCSLEEllRTEQQRleknEDQLKIITMELQKKS-----SELEE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 482 SHRH------QLEALESPLCiQHEGHVSDRCCVETSAlghewrlEPSEGHSQELPW--------VHLQGVQDGDLEADTE 547
Cdd:pfam05483 396 MTKFknnkevELEELKKILA-EDEKLLDEKKQFEKIA-------EELKGKEQELIFllqarekeIHDLEIQLTAIKTSEE 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 548 RAAR-VLGLETEHKVQlSLLQTELKEEIELLKIENRNLygkLQHETRLKDDLEKvkhnliedHQKELNNAKQKTELMKQE 626
Cdd:pfam05483 468 HYLKeVEDLKTELEKE-KLKNIELTAHCDKLLLENKEL---TQEASDMTLELKK--------HQEDIINCKKQEERMLKQ 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 627 ---FQRKETDWKVMKEELQREAEEKLTLMLLELrEKAESEKQTIINKFELREAEMRQLQDQQAaqilDLERSLTEQQGRL 703
Cdd:pfam05483 536 ienLEEKEMNLRDELESVREEFIQKGDEVKCKL-DKSEENARSIEYEVLKKEKQMKILENKCN----NLKKQIENKNKNI 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 704 QQLEQDltsddalhcSQCGREPPTAQDGELAALHVKEDcALQLMLARSRfleerkeitEKFSAEQDAFLQEAQEQHAREL 783
Cdd:pfam05483 611 EELHQE---------NKALKKKGSAENKQLNAYEIKVN-KLELELASAK---------QKFEEIIDNYQKEIEDKKISEE 671
|
650 660 670
....*....|....*....|....*....|....*....
gi 937500814 784 QLLQERHQQQLLSVTA-----ELEARHQAALGELTASLE 817
Cdd:pfam05483 672 KLLEEVEKAKAIADEAvklqkEIDKRCQHKIAEMVALME 710
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
2393-2719 |
4.61e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.36 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2393 LPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAykvEQEKCIAgDLQKTLSEEQE 2472
Cdd:pfam19220 43 LPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALR---EAEAAKE-ELRIELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2473 KANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAaLQELESEQG-KGRALQSQL 2551
Cdd:pfam19220 119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRR-LQALSEEQAaELAELTRRL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2552 EE-EQLR--HLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKD 2628
Cdd:pfam19220 198 AElETQLdaTRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2629 LAAEKSRTLELSEAL-----RHERLLTEQLSQRTQEACVHQ---DTQAHHALLQKLKEEKS--------RVVDLQAMLEK 2692
Cdd:pfam19220 278 IRAAERRLKEASIERdtlerRLAGLEADLERRTQQFQEMQRaraELEERAEMLTKALAAKDaaleraeeRIASLSDRIAE 357
|
330 340
....*....|....*....|....*..
gi 937500814 2693 VQQQALHSQQQLEAEAQKHCEALRREK 2719
Cdd:pfam19220 358 LTKRFEVERAALEQANRRLKEELQRER 384
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1146-1815 |
4.69e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1146 SLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHqellecLKEESAAKAELALELHKTQGTLEGFKVE 1225
Cdd:pfam15921 169 NTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMH------FRSLGSAISKILRELDTEISYLKGRIFP 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1226 TADLKEVLagKEDSEHRLVLELEslrrqlqqaaqeqaALREECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRK 1305
Cdd:pfam15921 243 VEDQLEAL--KSESQNKIELLLQ--------------QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1306 QAEKDRSALLSQMKILESELEEQLSQHRGCAKQAE-AVTALEQQVASLDKHLRNQRQFMDEqaaerehereeFQQEIQRL 1384
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKQLVLANSELTEARTERDQ-----------FSQESGNL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1385 EGQLRQAAKpqpwgprDSQQAPLDGEVELLQQKLREKLDEFNELAI---QKESADRQVlmqeeEIKRLEEMninIRKKVA 1461
Cdd:pfam15921 376 DDQLQKLLA-------DLHKREKELSLEKEQNKRLWDRDTGNSITIdhlRRELDDRNM-----EVQRLEAL---LKAMKS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1462 QLQEEVEKQKNIVKGLEQdkevlkkqqmsSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRAllrreseVLDLK 1541
Cdd:pfam15921 441 ECQGQMERQMAAIQGKNE-----------SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT-------VSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1542 EQLEKMKGDLESKNEEILHLNLKLDMQNSQ------TAVSLRELEEENTSLKVIYTRSSE-IEELKATIENLQE---NQK 1611
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQElqhlknEGDHLRNVQTECEALKLQMAEKDKvIEILRQQIENMTQlvgQHG 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1612 RLQKEKAEEIEQLHEVIEKLQHELSLMgPVVHEVSDSQAGSLQS--------ELLCSQAGGPRGQALQ------------ 1671
Cdd:pfam15921 583 RTAGAMQVEKAQLEKEINDRRLELQEF-KILKDKKDAKIRELEArvsdleleKVKLVNAGSERLRAVKdikqerdqllne 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1672 -----GELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAE-----LQLAE------------LERNVALREA 1729
Cdd:pfam15921 662 vktsrNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEqtrntLKSMEgsdghamkvamgMQKQITAKRG 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1730 EVEDMASRIQEFEAALkakeatiAERNLEIDALNQRKAAHSAELEAVllalarirrALEQQPLAAgaappELQWLRAQCA 1809
Cdd:pfam15921 742 QIDALQSKIQFLEEAM-------TNANKEKHFLKEEKNKLSQELSTV---------ATEKNKMAG-----ELEVLRSQER 800
|
....*.
gi 937500814 1810 RLSRQL 1815
Cdd:pfam15921 801 RLKEKV 806
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
575-881 |
4.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 575 ELLKIENR--NLYGKLQHETRLKDDLEkVKHNLIEDHQKELNNAKQktelmkqeFQRKETDWKVMKEELQREAEEKLtlm 652
Cdd:PRK04863 301 QLAAEQYRlvEMARELAELNEAESDLE-QDYQAASDHLNLVQTALR--------QQEKIERYQADLEELEERLEEQN--- 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 653 llELREKAESEKQTIINKFELREAEmrqlQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALHcSQCGREPPTAQ--D 730
Cdd:PRK04863 369 --EVVEEADEQQEENEARAEAAEEE----VDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGLPDLTADnaE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 731 GELAALHVKEDCALQLML-----------ARSRFlEERKEITEKFSAEQDAflQEAQEQhARELqLLQERHQQQLLSVTA 799
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLsleqklsvaqaAHSQF-EQAYQLVRKIAGEVSR--SEAWDV-AREL-LRRLREQRHLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 800 ELEARhqaaLGELTASLESKQGA--LL--AARVAELQTKHAADLGALETRHLSSLDSLEScYLSEFQTIREEHRQALELL 875
Cdd:PRK04863 517 QLRMR----LSELEQRLRQQQRAerLLaeFCKRLGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQQLEQL 591
|
....*.
gi 937500814 876 RADFEE 881
Cdd:PRK04863 592 QARIQR 597
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
255-710 |
4.97e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 255 MEDLQNQFQKELAEQRAELEKIFQDKNqaERALRNLEshhqaAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELENL 334
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKP--ELNLKELK-----ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 335 QASYEDLKAQSQEEIRRLWSQLDSARTSRQELSE----LHEQLLARTSRVEDLEQLKQrEKTQHESELEQLRIYFEKKLR 410
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQELEALEAELAELPErleeLEERLEELRELEEELEELEA-ELAELQEELEELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 411 DAEKTYQEDLTLLQQRLQGAREDalldsvevglscvgLEEKpekgrkdhvdELEPERHKESLPRFQAELE-ESHRHQLEA 489
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEE--------------LEEA----------QEELEELEEELEQLENELEaAALEERLKE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 490 LESPLCIQHEGHVsdrccvetsALGHEWRLEPSEGHSQELPWVHLQGV---------QDGDLEADTERAARVLGLETEHK 560
Cdd:COG4717 248 ARLLLLIAAALLA---------LLGLGGSLLSLILTIAGVLFLVLGLLallflllarEKASLGKEAEELQALPALEELEE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 561 VQLSLLQTELKEEIELLKIENRNLYGKLQH----ETRLKDDLEKVKHNLIEDHQKEL---NNAKQKTEL-----MKQEFQ 628
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEElqelLREAEELEEELQLEELEQEIAALlaeAGVEDEEELraaleQAEEYQ 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 629 RKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAqiLDLERSLTEQQGRLQQLEQ 708
Cdd:COG4717 399 ELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE--LEAELEQLEEDGELAELLQ 476
|
..
gi 937500814 709 DL 710
Cdd:COG4717 477 EL 478
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
100-386 |
5.00e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 100 ECELAITDLESGRED--------EAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREmlnsrRA 171
Cdd:PRK02224 472 EDRERVEELEAELEDleeeveevEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE-----RA 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 172 QELallqsrqQHELELLREQhAREKEEVVLRCGQEAAELKEKLQ---SEMEKNAQIVKTLKEDWESEKDLclENLRKELs 248
Cdd:PRK02224 547 AEL-------EAEAEEKREA-AAEAEEEAEEAREEVAELNSKLAelkERIESLERIRTLLAAIADAEDEI--ERLREKR- 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 249 aKHQSEMEDLQNQFQKELAEQRAELEKIFQDknqaeralrnleshhqAAIEKLREDLQsehgrcledlefkfkesekekq 328
Cdd:PRK02224 616 -EALAELNDERRERLAEKRERKRELEAEFDE----------------ARIEEAREDKE---------------------- 656
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 329 lELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQL 386
Cdd:PRK02224 657 -RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
142-712 |
5.10e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 142 AQLELTQANLQkEKETALTELREMLNSR-RAQELALLQSRQQHELELLREQHAREKEEV---------------VLRCGQ 205
Cdd:TIGR00618 229 KHLREALQQTQ-QSHAYLTQKREAQEEQlKKQQLLKQLRARIEELRAQEAVLEETQERInrarkaaplaahikaVTQIEQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 206 EAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlcLENLRKELSAKHQSEME-----DLQNQFQKELAEQRAELEKIFQDK 280
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS--IEEQRRLLQTLHSQEIHirdahEVATSIREISCQQHTLTQHIHTLQ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 281 NQAERALRNLESHHQaAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELEnlQASYEDLKAQSQEEIRRLWSQLDSAR 360
Cdd:TIGR00618 386 QQKTTLTQKLQSLCK-ELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ--QRYAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 361 TSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVE 440
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 441 VGLSCVGLEEKPEKGRKDHVDELEPERHKESLprfQAELEESHRHQLEALESPLC-IQHEGHVSDRCCVETSALGHEWRL 519
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSI---LTQCDNRSKEDIPNLQNITVrLQDLTEKLSEAEDMLACEQHALLR 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 520 EPSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTELKEEielLKIENRNLYGKLQHE----TRLK 595
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE---LLASRQLALQKMQSEkeqlTYWK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 596 DDLEKVKHNLIEDHQKELNNAKQKTEL------MKQEFQRKETDWKVMKEELQREAEEKLT----------------LML 653
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIenasssLGSDLAAREDALNQSLKELMHQARTVLKarteahfnnneevtaaLQT 776
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 654 LELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTS 712
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
210-432 |
5.59e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 210 LKEKLQSEMEKNAQIVKTLKEDWESEKDLCLEnlRKELSAKHQSEMEDLQNqfqkeLAEQRAELEKIFQDKNQAERALRN 289
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNN-----LKSALNELSSLEDMKNRYESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 290 LESHHQAAIEKLRE--DLQSEHGRCLEDLEFKfkesEKEKQLELENLQASYEDLKaqsqEEIRRLWSQLDSARTSRQELS 367
Cdd:PRK01156 261 AESDLSMELEKNNYykELEERHMKIINDPVYK----NRNYINDYFKYKNDIENKK----QILSNIDAEINKYHAIIKKLS 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 368 EL---HEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKL-RDAEKTYQEDLTLLQQRLQGARE 432
Cdd:PRK01156 333 VLqkdYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKkIEEYSKNIERMSAFISEILKIQE 401
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1540-1752 |
5.65e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1540 LKEQLEKMKGDLESKNEEIL-----HLNLKLDMQNSQTAVSLRELEEENTSLKviytrsSEIEELKATIENLQENQKRLQ 1614
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEefrqkNGLVDLSEEAKLLLQQLSELESQLAEAR------AELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1615 KEKAE-----EIEQLHEVIEKLQHELSLMG-------PVVHEVsDSQAGSLQSELlcsqaggprgqalQGELEAALEAKE 1682
Cdd:COG3206 254 DALPEllqspVIQQLRAQLAELEAELAELSarytpnhPDVIAL-RAQIAALRAQL-------------QQEAQRILASLE 319
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1683 ALSRLLADQERRHSQALEALQQRLQGAEEAaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATI 1752
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1524-1635 |
5.65e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1524 EVTQRALLRRESEVLDLKEQLEKmkgDLESKNEEILHLNLKLDmqnsqtavslrELEEENTSLKviytrsSEIEELKATI 1603
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEER---ELTEEEEEIRRLEEQVE-----------RLEAEVEELE------AELEEKDERI 443
|
90 100 110
....*....|....*....|....*....|....*...
gi 937500814 1604 ENLQENQKRLQKEKAEEIEQLHEV------IEKLQHEL 1635
Cdd:COG2433 444 ERLERELSEARSEERREIRKDREIsrldreIERLEREL 481
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1680-1838 |
5.85e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1680 AKEALSRLLADQERRHSQALEALQQRLQGAE---EAAELQLAEL--ERNVALREAEVEDMASRIQEFEAALKAKEATIAE 1754
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRkelEEAEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1755 RNLEIDALNQRKAAH---------SAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRC 1825
Cdd:COG3206 238 AEARLAALRAQLGSGpdalpellqSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170
....*....|....
gi 937500814 1826 -QVELDRRQARRAT 1838
Cdd:COG3206 318 lEAELEALQAREAS 331
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
537-690 |
5.98e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 537 VQDGDLEADTERAARVLGLETEHKVQLSLLQTELKE-EIELLKIENRNLygklQHETRLKDDLEkvkhnLIEDHQKELNN 615
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRErRNELQKLEKRLL----QKEENLDRKLE-----LLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 616 AKQKTELMKQEFQRKETDWKVMKEELQRE--------AEEKLTLMLLELREKAESEKQTIINKFelrEAEMRQLQDQQAA 687
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQElerisgltAEEAKEILLEKVEEEARHEAAVLIKEI---EEEAKEEADKKAK 191
|
...
gi 937500814 688 QIL 690
Cdd:PRK12704 192 EIL 194
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
673-1055 |
5.98e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 673 LREAEMRQLQDQQAAQI----LDLERSLTEQQGRLQQLEQDLTSddalhcsQCGREPPTAQDGELAALHvkedcaLQLML 748
Cdd:PRK04863 275 MRHANERRVHLEEALELrrelYTSRRQLAAEQYRLVEMARELAE-------LNEAESDLEQDYQAASDH------LNLVQ 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 749 ARSRFLEErkeiTEKFSAEqdafLQEAQEQHARELQLLQERHQQQllsvtAELEARHQAA---LGELTASLESKQGALLA 825
Cdd:PRK04863 342 TALRQQEK----IERYQAD----LEELEERLEEQNEVVEEADEQQ-----EENEARAEAAeeeVDELKSQLADYQQALDV 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 826 ARVAELQTKHAadLGALE-TRHLSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLwkkdSLHQTILTQeleklkrk 904
Cdd:PRK04863 409 QQTRAIQYQQA--VQALErAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL----SVAQAAHSQ-------- 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 905 HEGELQSVRdHLRTEVSTELAGTVAHELQG-----VHQGEFGSEKKTALHEKEETLRLQSA---------QAQPFHQEEK 970
Cdd:PRK04863 475 FEQAYQLVR-KIAGEVSRSEAWDVARELLRrlreqRHLAEQLQQLRMRLSELEQRLRQQQRaerllaefcKRLGKNLDDE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 971 ESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRER-ENREGANLlsmlkadvnlshsergALQDALRRLLG 1049
Cdd:PRK04863 554 DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRlAARAPAWL----------------AAQDALARLRE 617
|
....*.
gi 937500814 1050 LFGETL 1055
Cdd:PRK04863 618 QSGEEF 623
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
1539-1636 |
6.31e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 41.59 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1539 DLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEElKATIENLQENQKRLQKEKA 1618
Cdd:cd22656 118 TIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGAIA-RKEIKDLQKELEKLNEEYA 196
|
90 100
....*....|....*....|..
gi 937500814 1619 ----EEIEQLHEVIEKLQHELS 1636
Cdd:cd22656 197 aklkAKIDELKALIADDEAKLA 218
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
2416-2779 |
6.64e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2416 QNQEKLQHLRTALTSAEARGSQQEHQLRR----QVELLAYKVEQEKCIAGDLQKTL----SEEQEKANSVQKLLAAEQTV 2487
Cdd:pfam01576 324 KREQEVTELKKALEEETRSHEAQLQEMRQkhtqALEELTEQLEQAKRNKANLEKAKqaleSENAELQAELRTLQQAKQDS 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2488 ----------VRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLR 2557
Cdd:pfam01576 404 ehkrkklegqLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2558 HLQRESQsAKALEELRASLETQraqssrlcvaLKHEQTAKDNLQKELriehSRCEALLAQERSQLSE------------- 2624
Cdd:pfam01576 484 KLNLSTR-LRQLEDERNSLQEQ----------LEEEEEAKRNVERQL----STLQAQLSDMKKKLEEdagtlealeegkk 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2625 -LQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQahHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQ 2703
Cdd:pfam01576 549 rLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ--RQLVSNLEKKQKKFDQMLAEEKAISARYAEERDR 626
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937500814 2704 LEAEA-QKHCEALRREKERELELQRQRDLHKI-KQLQQTVRDL-ESKDEVPGSRLHLGSARRAAGSDADHLREQQRELE 2779
Cdd:pfam01576 627 AEAEArEKETRALSLARALEEALEAKEELERTnKQLRAEMEDLvSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELE 705
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
107-389 |
6.64e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 107 DLESGREDEAGLHQSQAVHGLELEALRLSLSNmhTAQLELTQANLQKEKETALTELREMLNSR-RAQELALLQSRQQH-- 183
Cdd:pfam01576 279 DLESERAARNKAEKQRRDLGEELEALKTELED--TLDTTAAQQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHtq 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 184 ---ELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLcLENLRKELSAKHqSEMEDLQN 260
Cdd:pfam01576 357 aleELTEQLEQAKRNKANL-----EKAKQALESENAELQAELRTLQQAKQDSEHKRKK-LEGQLQELQARL-SESERQRA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 261 QFQKELAEQRAELEKIFQDKNQAE-------RALRNLESHHQAAIEKLREDLQ-----SEHGRCLED-----LEFKFKES 323
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEgkniklsKDVSSLESQLQDTQELLQEETRqklnlSTRLRQLEDernslQEQLEEEE 509
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937500814 324 EKEKQLE--LENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQR 389
Cdd:pfam01576 510 EAKRNVErqLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNR 577
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
205-336 |
6.95e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 205 QEAAELKEKLQsEMEKnaqivktLKEDWESEKDlclenlrkELSAKHQSEMEDLQNQFQKELAEQRAELEKIFqdknqae 284
Cdd:PRK00409 534 QKAEEAEALLK-EAEK-------LKEELEEKKE--------KLQEEEDKLLEEAEKEAQQAIKEAKKEADEII------- 590
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 937500814 285 RALRNLESHHQAAIEklREDLQSEHGRcLEDLEFKFKESEKEKQLELENLQA 336
Cdd:PRK00409 591 KELRQLQKGGYASVK--AHELIEARKR-LNKANEKKEKKKKKQKEKQEELKV 639
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
100-803 |
7.19e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 100 ECELAITDLESGREDEAGLHQSQAVHGLELEALRLSlsnMHTAQLELTQANLQKEKETALTELR----------EMLNSR 169
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKR---LEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 170 RAQELALLQ----SRQQHELELLREQHAREKEEVVLRCGQEAAElKEKLQSEMEKNAQIVKTLKEDWEsEKDLCLENLRK 245
Cdd:TIGR02169 308 RSIAEKEREledaEERLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAELE-EVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 246 ELSaKHQSEMEDLQ---NQFQKELAEQRAELEKIFQDKNQAERALRNLESHHqAAIEKLREDLQSEHGRCLEDLE--FKF 320
Cdd:TIGR02169 386 ELK-DYREKLEKLKreiNELKRELDRLQEELQRLSEELADLNAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEqlAAD 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 321 KESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRV-------------------- 380
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataiev 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 381 ------------------EDLEQLKQR-----------EKTQHESELEQLR-----------IYFEKKLRDAEKTYQEDl 420
Cdd:TIGR02169 544 aagnrlnnvvveddavakEAIELLKRRkagratflplnKMRDERRDLSILSedgvigfavdlVEFDPKYEPAFKYVFGD- 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 421 TLLQQRLQGAREdaLLDSVEVglscVGLE-EKPEKG-------RKDHVDELEPERHKESLPRFQAELEESHRhQLEALES 492
Cdd:TIGR02169 623 TLVVEDIEAARR--LMGKYRM----VTLEgELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKR-ELSSLQS 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 493 plciqheghvsdrccvetsalghewRLEPSEGHSQELpwvhLQGVQdgDLEADTERAARVLGLETEHKVQLSLLQTELKE 572
Cdd:TIGR02169 696 -------------------------ELRRIENRLDEL----SQELS--DASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 573 EIELLKIENRNLYGKLQHETRLKDDLEKVKHNLiedhQKELNNAKQKteLMKQEFQRKETDWKVMKEELQR--------E 644
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKL----EEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRiearlreiE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 645 AEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQ---DLTSDDALHCSQc 721
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESrlgDLKKERDELEAQ- 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 722 GREPPTAQDGELAALHVKEDCALQLMLARSRFLEERKEItekfsaeqDAFLQEAQEQHARELQLlqERHQQQLLSVTAEL 801
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI--------EDPKGEDEEIPEEELSL--EDVQAELQRVEEEI 967
|
..
gi 937500814 802 EA 803
Cdd:TIGR02169 968 RA 969
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
248-434 |
7.31e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 248 SAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLR--EDLQSEHGRCLEDLEfkfkESEK 325
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRalEQELAALEAELAELE----KEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 326 EKQLELENLQASYEDL-----KAQSQEEIRRLWSQLDSARTSR---------QELSELHEQLLARTSRVEDLEQLKQREK 391
Cdd:COG4942 94 ELRAELEAQKEELAELlralyRLGRQPPLALLLSPEDFLDAVRrlqylkylaPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 937500814 392 TQHESELEQLRIYfEKKLRDAEKTYQEDLTLLQQRLQGAREDA 434
Cdd:COG4942 174 AELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2369-2788 |
7.56e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2369 LLERLEKIIREQGDLQEKSLEHLRLpdRSSLLSEIQALRAQLRMTHLqNQEKLQHLRTALTSAEARGSQQEHQLRRQVEL 2448
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRER--LEELEEERDDLLAEAGLDDA-DAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2449 LAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRS----------LCEVQQEVLQ 2518
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdlgnAEDFLEELRE 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2519 LRSMLSSKENELKAALQELESEQGKGRALQSQ-------LEEEQLRHLQRESQSAKALEELRASLETQRAQSSRlcVALK 2591
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE--VEER 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2592 HEQtAKDNLQKELRIEHSRCEALLAQERsqLSELQKDLAAEKSRTLELSEalRHERLLTEQLSQRTQEACVHQDTQAHHA 2671
Cdd:PRK02224 498 LER-AEDLVEAEDRIERLEERREDLEEL--IAERRETIEEKRERAEELRE--RAAELEAEAEEKREAAAEAEEEAEEARE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2672 LLQKLKEEKSRVVDLQAMLEKVQQQALHSqqqleAEAQKHCEALRREKERELELQRQRDlHKIKQLQQTVRDLEskDEVP 2751
Cdd:PRK02224 573 EVAELNSKLAELKERIESLERIRTLLAAI-----ADAEDEIERLREKREALAELNDERR-ERLAEKRERKRELE--AEFD 644
|
410 420 430
....*....|....*....|....*....|....*...
gi 937500814 2752 GSRLHLGSARRAAGSDA-DHLREQQRELEAMRQRLLSA 2788
Cdd:PRK02224 645 EARIEEAREDKERAEEYlEQVEEKLDELREERDDLQAE 682
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2395-2747 |
7.57e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2395 DRSSLLSEIQALRAQL---RMTHLQNQEKLQHLRTAL-TSAEARGS-QQEHQ-----LRRQVELLAYKVEQEKCIAgDLQ 2464
Cdd:PRK04863 280 ERRVHLEEALELRRELytsRRQLAAEQYRLVEMARELaELNEAESDlEQDYQaasdhLNLVQTALRQQEKIERYQA-DLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2465 KtLSEEQEKANSVQKLlAAEQtvvrdlksdLCESRQKSEQlsrslceVQQEVLQLRSMLSskenELKAALQELESeqgkg 2544
Cdd:PRK04863 359 E-LEERLEEQNEVVEE-ADEQ---------QEENEARAEA-------AEEEVDELKSQLA----DYQQALDVQQT----- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2545 RALQSQLEEEQLRHLQRESQSAK-ALEELRASLETQRAQSSRLCVALKHeqtakdnLQKELRIE---HSRCEALLAQERS 2620
Cdd:PRK04863 412 RAIQYQQAVQALERAKQLCGLPDlTADNAEDWLEEFQAKEQEATEELLS-------LEQKLSVAqaaHSQFEQAYQLVRK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2621 QLSELQKDLAAEKSRtlELSEALRHERLLTEQLSQRtqeacvhqdtQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHS 2700
Cdd:PRK04863 485 IAGEVSRSEAWDVAR--ELLRRLREQRHLAEQLQQL----------RMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD 552
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 937500814 2701 QQQLEAEAQKHcEALRREKERELELQRQRDL---HKIKQLQQTVRDLESK 2747
Cdd:PRK04863 553 EDELEQLQEEL-EARLESLSESVSEARERRMalrQQLEQLQARIQRLAAR 601
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
268-1000 |
7.60e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 268 EQRAELEKIFQDKNQAERALRNLESHHQAAIEklredlqseHGRCLEDLEFKFKESEKEKQLELENLQAsyeDLKAQSQE 347
Cdd:pfam12128 238 KIRPEFTKLQQEFNTLESAELRLSHLHFGYKS---------DETLIASRQEERQETSAELNQLLRTLDD---QWKEKRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 348 EIRRLWSQLDSARTSRQELSELHEQLLARTSrvEDLEQLK--QREKTQHESELEQLriyfeKKLRDAEKTYQEDLTLLQQ 425
Cdd:pfam12128 306 LNGELSAADAAVAKDRSELEALEDQHGAFLD--ADIETAAadQEQLPSWQSELENL-----EERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 426 RLQGAREDALLDSVEvglscvGLEEKPEKGRKDHVdeleperhkeslprFQAELEESHrhqLEALESPLCIQHEGHVSDr 505
Cdd:pfam12128 379 RRRSKIKEQNNRDIA------GIKDKLAKIREARD--------------RQLAVAEDD---LQALESELREQLEAGKLE- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 506 ccVETSALGHEWRLEPSEGH---SQELPWVHLQGVQDGDL-----EADTERAARVLGLETEhkvqLSLLQTELKEEIELL 577
Cdd:pfam12128 435 --FNEEEYRLKSRLGELKLRlnqATATPELLLQLENFDERierarEEQEAANAEVERLQSE----LRQARKRRDQASEAL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 578 KIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDwkVMKEELQREAEEKLTLMLLELR 657
Cdd:pfam12128 509 RQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVKLD 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 658 EKAesekqtiinkfeLREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLtsddalhcSQCGREPPTAQDGELAALH 737
Cdd:pfam12128 587 LKR------------IDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL--------VQANGELEKASREETFART 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 738 VKEDCALQL------MLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGE 811
Cdd:pfam12128 647 ALKNARLDLrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGA 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 812 LTASLeskqgALLAARVAELQTKHAADLGALETRHLSSLDSL--ESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSL 889
Cdd:pfam12128 727 LDAQL-----ALLKAAIAARRSGAKAELKALETWYKRDLASLgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWY 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 890 HQTILTQE--LEKLKRKHEGELQSVRDHL-RTEVSTELagtvahELQGVHQGEFGSEKktALHEKEETLR----LQSAQA 962
Cdd:pfam12128 802 QETWLQRRprLATQLSNIERAISELQQQLaRLIADTKL------RRAKLEMERKASEK--QQVRLSENLRglrcEMSKLA 873
|
730 740 750
....*....|....*....|....*....|....*...
gi 937500814 963 QPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEE 1000
Cdd:pfam12128 874 TLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2400-2644 |
8.11e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2400 LSEIQALRAQLRMTHLQNQEKLQHLRTALtsaeargsQQEHQLRRQVELLAYKVEQEKCIagDLQKTLSEEQEKANSVQ- 2478
Cdd:COG3096 845 RSELERELAQHRAQEQQLRQQLDQLKEQL--------QLLNKLLPQANLLADETLADRLE--ELREELDAAQEAQAFIQq 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2479 --KLLAAEQTVVRDLKSDlcesRQKSEQLSRSLCEVQQEVLQLRSMLSS----KENELKAALQELESEQGKGRALQSQLe 2552
Cdd:COG3096 915 hgKALAQLEPLVAVLQSD----PEQFEQLQADYLQAKEQQRRLKQQIFAlsevVQRRPHFSYEDAVGLLGENSDLNEKL- 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2553 EEQLRHLqrESQSAKALEELRAsLETQRAQSSRLCVALKHEQTAKDNLQKEL-------------------RIEHSRCEA 2613
Cdd:COG3096 990 RARLEQA--EEARREAREQLRQ-AQAQYSQYNQVLASLKSSRDAKQQTLQELeqeleelgvqadaeaeeraRIRRDELHE 1066
|
250 260 270
....*....|....*....|....*....|.
gi 937500814 2614 LLAQERSQLSELQKDLAAEKSRTLELSEALR 2644
Cdd:COG3096 1067 ELSQNRSRRSQLEKQLTRCEAEMDSLQKRLR 1097
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2431-2785 |
8.22e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2431 AEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCE-------SRQKSE 2503
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeeekLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2504 QLSRSLCEVQQEVLQLRSMLSskenELKAALQELESEQGKGRAlqsqleeeqlrhlqresqsakALEELRASLETQRAQS 2583
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELK----ELEARIEELEEDLHKLEE---------------------ALNDLEARLSHSRIPE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2584 srlcvalkheqtaKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSrtlELSEALRHERLLTEQLSQRTQEacVH 2663
Cdd:TIGR02169 796 -------------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK---EIQELQEQRIDLKEQIKSIEKE--IE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2664 QDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALhsqqqleaEAQKHCEALRReKERELELQRQRDLHKIKQLQQTVRD 2743
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERD--------ELEAQLRELER-KIEELEAQIEKKRKRLSELKAKLEA 928
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 937500814 2744 LESKDEVPGSRLHLGSARRAAGSDADHLREQQRELEAMRQRL 2785
Cdd:TIGR02169 929 LEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1161-1638 |
8.80e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1161 RQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLEclKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSE 1240
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE--LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKL 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1241 HRLVLELESLRRQLQQAAQEQAALREECTR------LWSRGEATATdAEAREAALRKEVEDLTKEQSETRKQAEKDRSAL 1314
Cdd:TIGR00606 518 RKLDQEMEQLNHHTTTRTQMEMLTKDKMDKdeqirkIKSRHSDELT-SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKL 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1315 LSQMKILES----------ELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQfmdeQAAEREHEREEFQQEIQRL 1384
Cdd:TIGR00606 597 NKELASLEQnknhinneleSKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSK----QRAMLAGATAVYSQFITQL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1385 EGQLRQAAkpqPWGPRDSQ-QAPLDGEVELLQQKLR---EKLDEFNELAIQKESADRQVL-----------MQEEEIKRL 1449
Cdd:TIGR00606 673 TDENQSCC---PVCQRVFQtEAELQEFISDLQSKLRlapDKLKSTESELKKKEKRRDEMLglapgrqsiidLKEKEIPEL 749
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1450 EEMNINIRKKVAQLQEEVEKQKNIVkGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQ-- 1527
Cdd:TIGR00606 750 RNKLQKVNRDIQRLKNDIEEQETLL-GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQvn 828
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1528 RALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLD------MQNSQTAVSLRELEEENTSL-KVIYTRSSEIEELK 1600
Cdd:TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNelksekLQIGTNLQRRQQFEEQLVELsTEVQSLIREIKDAK 908
|
490 500 510
....*....|....*....|....*....|....*...
gi 937500814 1601 ATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLM 1638
Cdd:TIGR00606 909 EQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
731-1469 |
9.04e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 731 GELAALHVKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHA-----RELQLLQERHQQQLLSVTAELEaRH 805
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAyltqkREAQEEQLKKQQLLKQLRARIE-EL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 806 QAALGELTASLESKQGALLAARVAELQtKHAADLGALETRHLSSLDSLESCYLSEFQtireeHRQALELLRADFEEQLWK 885
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLM-----KRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 886 KDSLHQtiltqELEKLKRKHEGELqSVRDHLRTEVSTElagtvAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQPF 965
Cdd:TIGR00618 347 LQTLHS-----QEIHIRDAHEVAT-SIREISCQQHTLT-----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 966 HQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSEL--EVLQQRRERENREGANLLSMLKA---DVNLSHSERGAL 1040
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKleKIHLQESAQSLKEREQQLQTKEQihlQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1041 QDALRRLLGLFGETLRAAVTLRSRIGERVGLClddagaglalstapaleetwsdvalPELDRTLSECAEMSSVAEISSHM 1120
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLT-------------------------RRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1121 RESFLMSPESVRECEQPIRRVFQSLSLAVDGLMEmaldssrQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKE 1200
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE-------DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1201 EsAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHrlvlelesLRRQLQQAAQEQAALREECTRLWSRGEATAT 1280
Cdd:TIGR00618 624 E-QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH--------ALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1281 DAE--AREAALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRN 1358
Cdd:TIGR00618 695 WKEmlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAAL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1359 QRqfmDEQAAEREHEREEFQQEIQRLEGQLRQAaKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQ 1438
Cdd:TIGR00618 775 QT---GAELSHLAAEIQFFNRLREEDTHLLKTL-EAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
730 740 750
....*....|....*....|....*....|.
gi 937500814 1439 VLMQEEEIKRLEEMNinirKKVAQLQEEVEK 1469
Cdd:TIGR00618 851 LLKYEECSKQLAQLT----QEQAKIIQLSDK 877
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
674-830 |
9.25e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.22 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 674 REAEMRQLQDQQAAqILDLERSLTEQQGRLQQLEQDLTSDDA----LHCSQCGREPPTAQDGElAALHVKEDCALQLML- 748
Cdd:PRK11637 70 RASLLAQLKKQEEA-ISQASRKLRETQNTLNQLNKQIDELNAsiakLEQQQAAQERLLAAQLD-AAFRQGEHTGLQLILs 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 749 -------------------ARSRFLEERKEITEKFSAeQDAFLQEAQEQHArelQLLQERHQQQLLSVTAELEarHQAAL 809
Cdd:PRK11637 148 geesqrgerilayfgylnqARQETIAELKQTREELAA-QKAELEEKQSQQK---TLLYEQQAQQQKLEQARNE--RKKTL 221
|
170 180
....*....|....*....|.
gi 937500814 810 GELTASLESKQGALLAARVAE 830
Cdd:PRK11637 222 TGLESSLQKDQQQLSELRANE 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1414-1786 |
9.27e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1414 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLL 1493
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1494 LA-STLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKmkgdlESKNEEILHLNLKLDMQNSQT 1572
Cdd:pfam02463 314 EKlKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEK-----LEQLEEELLAKKKLESERLSS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1573 AVSLREL------EEENTSLKVIYTRSSEIEELKATI----ENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGpVV 1642
Cdd:pfam02463 389 AAKLKEEelelksEEEKEAQLLLELARQLEDLLKEEKkeelEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL-EL 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1643 HEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELER 1722
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937500814 1723 NVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRA 1786
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKA 611
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1200-1626 |
9.57e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1200 EESAAKAELALELHK-TQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLWSRGEAT 1278
Cdd:PRK02224 233 RETRDEADEVLEEHEeRREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1279 A---TDAEAREAALRKEVEDLTKEQSETRKQAEKDRSA----------LLSQMKILESELEEQLSQHRgcaKQAEAVTAL 1345
Cdd:PRK02224 313 EarrEELEDRDEELRDRLEECRVAAQAHNEEAESLREDaddleeraeeLREEAAELESELEEAREAVE---DRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1346 EQQVASLDKHLRN---QRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAakpqpwgprdsQQAPLDGEVELLQQKLREKL 1422
Cdd:PRK02224 390 EEEIEELRERFGDapvDLGNAEDFLEELREERDELREREAELEATLRTA-----------RERVEEAEALLEAGKCPECG 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1423 DEFNELAIQKESADRqvlmqEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKgLEQDKEVLKKQQMSSLLLASTLQSTL 1502
Cdd:PRK02224 459 QPVEGSPHVETIEED-----RERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETI 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 1503 DAGRcpeppsgsppegpeIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqnsqtavslrELEEE 1582
Cdd:PRK02224 533 EEKR--------------ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-----------ELKER 587
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 937500814 1583 NTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHE 1626
Cdd:PRK02224 588 IESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2370-2884 |
9.92e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2370 LERLEKIIREQGDLQEKSLEHLRLPDrssllsEIQALRAQLRMTHLQNQEKLQHLRTALtsAEARGSQQEHQLRRQVELL 2449
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKR------EAQEEQLKKQQLLKQLRARIEELRAQE--AVLEETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2450 AYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDlksdlcesRQKSEQLSRSLCEVQQEVLQLRSmlsskene 2529
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ--------QSSIEEQRRLLQTLHSQEIHIRD-------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2530 lkaalqelESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHS 2609
Cdd:TIGR00618 360 --------AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2610 RCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQeacvhqdtqahhaLLQKLKEEKsrvvdlqam 2689
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ-------------IHLQETRKK--------- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2690 leKVQQQALHSQQQLEAEAQKHCeaLRREKERELELQRQRDLHKIKQLQQTVRDLESKDEvpGSRLHLGSARRAAGSDAD 2769
Cdd:TIGR00618 490 --AVVLARLLELQEEPCPLCGSC--IHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE--DVYHQLTSERKQRASLKE 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937500814 2770 HLREQQRELEAMRQRLLSAARLLTSFTSQAVDrtVNDWTSSNEKAVMSLLHTLEELKSDLSRPTSSQKKMAAELQFQFVD 2849
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVR--LQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL 641
|
490 500 510
....*....|....*....|....*....|....*
gi 937500814 2850 VLLKdnVSLTKALSTVTQEKLELSRAVSKLEKLLK 2884
Cdd:TIGR00618 642 ALKL--TALHALQLTLTQERVREHALSIRVLPKEL 674
|
|
| |
