PEX5-related protein isoform 8 [Homo sapiens]
tetratricopeptide repeat protein( domain architecture ID 1000094)
tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
PEP_TPR_lipo super family | cl37187 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
139-369 | 2.98e-11 | ||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. The actual alignment was detected with superfamily member TIGR02917: Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 2.98e-11
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Name | Accession | Description | Interval | E-value | ||||
PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
139-369 | 2.98e-11 | ||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 2.98e-11
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
248-382 | 5.04e-08 | ||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 53.59 E-value: 5.04e-08
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
317-382 | 1.08e-04 | ||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.08e-04
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PRK11189 | PRK11189 | lipoprotein NlpI; Provisional |
288-337 | 1.55e-03 | ||||
lipoprotein NlpI; Provisional Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 40.26 E-value: 1.55e-03
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Name | Accession | Description | Interval | E-value | |||||
PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
139-369 | 2.98e-11 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 2.98e-11
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
136-356 | 4.54e-10 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 61.64 E-value: 4.54e-10
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
145-382 | 2.45e-09 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 2.45e-09
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
141-379 | 1.88e-08 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 1.88e-08
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
248-382 | 5.04e-08 | |||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 53.59 E-value: 5.04e-08
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
74-347 | 1.36e-07 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 52.93 E-value: 1.36e-07
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
163-347 | 2.92e-06 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 2.92e-06
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YfgC | COG4783 | Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; |
234-370 | 8.83e-06 | |||||
Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Pssm-ID: 227122 [Multi-domain] Cd Length: 484 Bit Score: 47.78 E-value: 8.83e-06
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
116-382 | 3.81e-05 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 45.22 E-value: 3.81e-05
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PEP_TPR_lipo | TIGR02917 | putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
163-335 | 6.70e-05 | |||||
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.46 E-value: 6.70e-05
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3a0801s09 | TIGR00990 | mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
288-390 | 7.05e-05 | |||||
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines] Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.97 E-value: 7.05e-05
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TPR_12 | pfam13424 | Tetratricopeptide repeat; |
317-382 | 1.08e-04 | |||||
Tetratricopeptide repeat; Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.08e-04
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NrfG | COG4235 | Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
154-233 | 3.05e-04 | |||||
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 226687 [Multi-domain] Cd Length: 287 Bit Score: 42.36 E-value: 3.05e-04
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TPR | COG0457 | Tetratricopeptide (TPR) repeat [General function prediction only]; |
262-383 | 6.28e-04 | |||||
Tetratricopeptide (TPR) repeat [General function prediction only]; Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 41.37 E-value: 6.28e-04
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TadD | COG5010 | Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
157-221 | 7.03e-04 | |||||
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 41.27 E-value: 7.03e-04
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TPR_1 | pfam00515 | Tetratricopeptide repeat; |
319-349 | 1.22e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 36.25 E-value: 1.22e-03
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PRK11189 | PRK11189 | lipoprotein NlpI; Provisional |
288-337 | 1.55e-03 | |||||
lipoprotein NlpI; Provisional Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 40.26 E-value: 1.55e-03
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TPR_1 | pfam00515 | Tetratricopeptide repeat; |
168-201 | 6.12e-03 | |||||
Tetratricopeptide repeat; Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 6.12e-03
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Blast search parameters | ||||
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