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Conserved domains on  [gi|1186518008|ref|NP_001337864|]
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zinc finger CCHC domain-containing protein 8 isoform 2 [Homo sapiens]

Protein Classification

PSP domain-containing protein( domain architecture ID 10651852)

PSP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
206-258 2.42e-21

proline-rich domain in spliceosome associated proteins;


:

Pssm-ID: 128850  Cd Length: 54  Bit Score: 87.41  E-value: 2.42e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1186518008  206 FGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGLAL 258
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPrLKIPGLNAPIPL 54
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
206-258 2.42e-21

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 87.41  E-value: 2.42e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1186518008  206 FGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGLAL 258
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPrLKIPGLNAPIPL 54
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 210-256 2.59e-18

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 78.64  E-value: 2.59e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1186518008 210 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWlkeAELENSGL 256
Cdd:pfam04046   1 KPGKLSDELREALGLPEGQPPPWLYRMQRLGPPPSY---PNLKIPGL 44
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
210-245 6.15e-04

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 42.67  E-value: 6.15e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1186518008 210 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 245
Cdd:COG5182   279 RPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSY 314
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
206-258 2.42e-21

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 87.41  E-value: 2.42e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1186518008  206 FGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGLAL 258
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPrLKIPGLNAPIPL 54
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 210-256 2.59e-18

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 78.64  E-value: 2.59e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1186518008 210 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWlkeAELENSGL 256
Cdd:pfam04046   1 KPGKLSDELREALGLPEGQPPPWLYRMQRLGPPPSY---PNLKIPGL 44
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
210-245 6.15e-04

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 42.67  E-value: 6.15e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1186518008 210 KPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 245
Cdd:COG5182   279 RPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSY 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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