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Conserved domains on  [gi|1238280186|ref|NP_001341890|]
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fibroblast growth factor 1 isoform 2 [Homo sapiens]

Protein Classification

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List of domain hits

Name Accession Description Interval E-value
beta-trefoil_FGF super family cl00060
FGF domain, beta-trefoil fold, found in acidic and basic fibroblast growth factor (FGF) ...
25-56 2.51e-21

FGF domain, beta-trefoil fold, found in acidic and basic fibroblast growth factor (FGF) superfamily; The FGF superfamily includes FGF1-23 and similar proteins. FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. They play essential roles in patterning and differentiation during vertebrate embryogenesis and have neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize, and their intracellular tyrosine kinase domains become active. The structure of FGFs is typical of the beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


The actual alignment was detected with superfamily member cd23313:

Pssm-ID: 469595  Cd Length: 128  Bit Score: 79.48  E-value: 2.51e-21
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
Cdd:cd23313     1 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 32
 
Name Accession Description Interval E-value
beta-trefoil_FGF1 cd23313
FGF domain, beta-trefoil fold, found in fibroblast growth factor 1 (FGF1) and similar proteins; ...
25-56 2.51e-21

FGF domain, beta-trefoil fold, found in fibroblast growth factor 1 (FGF1) and similar proteins; FGF1, also called acidic fibroblast growth factor (aFGF), or endothelial cell growth factor (ECGF), or heparin-binding growth factor 1 (HBGF1), plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation, and cell migration. It functions as potent mitogen in vitro. FGF-1 acts as a ligand for fibroblast growth factor receptor 1 (FGFR1) and integrins. It interacts with FGFR1, FGFR2, FGFR3, and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. It also interacts with fibroblast growth factor-binding protein 1 (FGFBP1), FGF1, and FGF2. It can induce angiogenesis. FGF1 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466999  Cd Length: 128  Bit Score: 79.48  E-value: 2.51e-21
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
Cdd:cd23313     1 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 32
FGF pfam00167
Fibroblast growth factor; Fibroblast growth factors are a family of proteins involved in ...
25-57 8.54e-12

Fibroblast growth factor; Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organizms, from nematodes to humans. Most share an internal core region of high similarity, conserved residues in which are involved in binding with their receptors. On binding, they cause dimerization of their tyrosine kinase receptors leading to intracellular signalling. There are currently four known tyrosine kinase receptors for fibroblast growth factors. These receptors can each bind several different members of this family. Members of this family have a beta trefoil structure. Most have N-terminal signal peptides and are secreted. A few lack signal sequences but are secreted anyway; still others also lack the signal peptide but are found on the cell surface and within the extracellular matrix. A third group remain intracellular. They have central roles in development, regulating cell proliferation, migration and differentiation. On the other hand, they are important in tissue repair following injury in adult organizms.


Pssm-ID: 425498  Cd Length: 124  Bit Score: 55.25  E-value: 8.54e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
Cdd:pfam00167   1 RVRRLYCRTGGFHLQILPDGKVDGTGEDGSPYS 33
FGF smart00442
Acidic and basic fibroblast growth factor family; Mitogens that stimulate growth or ...
23-58 1.34e-09

Acidic and basic fibroblast growth factor family; Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.


Pssm-ID: 214665  Cd Length: 126  Bit Score: 49.57  E-value: 1.34e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1238280186   23 YKKPKLLYCSNGGHfLRILPDGTVDGTRDRSDQHTD 58
Cdd:smart00442   1 TKRLRQLYCRNGQH-LQILPDGTVDGTRDESSSFTI 35
 
Name Accession Description Interval E-value
beta-trefoil_FGF1 cd23313
FGF domain, beta-trefoil fold, found in fibroblast growth factor 1 (FGF1) and similar proteins; ...
25-56 2.51e-21

FGF domain, beta-trefoil fold, found in fibroblast growth factor 1 (FGF1) and similar proteins; FGF1, also called acidic fibroblast growth factor (aFGF), or endothelial cell growth factor (ECGF), or heparin-binding growth factor 1 (HBGF1), plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation, and cell migration. It functions as potent mitogen in vitro. FGF-1 acts as a ligand for fibroblast growth factor receptor 1 (FGFR1) and integrins. It interacts with FGFR1, FGFR2, FGFR3, and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. It also interacts with fibroblast growth factor-binding protein 1 (FGFBP1), FGF1, and FGF2. It can induce angiogenesis. FGF1 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466999  Cd Length: 128  Bit Score: 79.48  E-value: 2.51e-21
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
Cdd:cd23313     1 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 32
beta-trefoil_FGF1-like cd23304
FGF domain, beta-trefoil fold, found in the fibroblast growth factor 1 (FGF1)-like family; The ...
25-57 1.48e-17

FGF domain, beta-trefoil fold, found in the fibroblast growth factor 1 (FGF1)-like family; The FGF1-like family includes FGF1 and FGF2. FGF1, also called acidic fibroblast growth factor (aFGF), or endothelial cell growth factor (ECGF), or heparin-binding growth factor 1 (HBGF-1), plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation, and cell migration. It functions as a potent mitogen in vitro. FGF1 acts as a ligand for fibroblast growth factor receptor 1 (FGFR1) and integrin. It interacts with FGFR1, FGFR2, FGFR3, and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. FGF1 also interacts with fibroblast growth factor-binding protein 1 (FGFBP1), FGF1, and FGF2. FGF2, also called basic fibroblast growth factor (bFGF), or heparin-binding growth factor 2 (HBGF2), acts as a ligand for FGFR1, FGFR2, FGFR3, and FGFR4. It also acts as an integrin ligand which is required for FGF2 signaling. FGF2 plays an important role in the regulation of cell survival, cell division, cell differentiation and cell migration. Both FGF1 and FGF2 contain a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466990  Cd Length: 127  Bit Score: 70.16  E-value: 1.48e-17
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd23304     1 KPKKLYCSNGGYHLRILPDGTVDGTREESDPYI 33
beta-trefoil_FGF2 cd23314
FGF domain, beta-trefoil fold, found in fibroblast growth factor 2 (FGF2) and similar proteins; ...
26-56 3.79e-15

FGF domain, beta-trefoil fold, found in fibroblast growth factor 2 (FGF2) and similar proteins; FGF2, also called basic fibroblast growth factor (bFGF), or heparin-binding growth factor 2 (HBGF2), acts as a ligand for fibroblast growth factor receptors, FGFR1, FGFR2, FGFR3, and FGFR4. It also acts as an integrin ligand which is required for FGF2 signaling. FGF2 plays an important role in the regulation of cell survival, cell division, cell differentiation, and cell migration. It functions as a potent mitogen in vitro. It can induce angiogenesis. FGF2 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 467000  Cd Length: 125  Bit Score: 63.71  E-value: 3.79e-15
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1238280186  26 PKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
Cdd:cd23314     2 PKRLYCKNGGFFLRIHPDGRVDGVREKSDPH 32
FGF pfam00167
Fibroblast growth factor; Fibroblast growth factors are a family of proteins involved in ...
25-57 8.54e-12

Fibroblast growth factor; Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organizms, from nematodes to humans. Most share an internal core region of high similarity, conserved residues in which are involved in binding with their receptors. On binding, they cause dimerization of their tyrosine kinase receptors leading to intracellular signalling. There are currently four known tyrosine kinase receptors for fibroblast growth factors. These receptors can each bind several different members of this family. Members of this family have a beta trefoil structure. Most have N-terminal signal peptides and are secreted. A few lack signal sequences but are secreted anyway; still others also lack the signal peptide but are found on the cell surface and within the extracellular matrix. A third group remain intracellular. They have central roles in development, regulating cell proliferation, migration and differentiation. On the other hand, they are important in tissue repair following injury in adult organizms.


Pssm-ID: 425498  Cd Length: 124  Bit Score: 55.25  E-value: 8.54e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1238280186  25 KPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
Cdd:pfam00167   1 RVRRLYCRTGGFHLQILPDGKVDGTGEDGSPYS 33
FGF smart00442
Acidic and basic fibroblast growth factor family; Mitogens that stimulate growth or ...
23-58 1.34e-09

Acidic and basic fibroblast growth factor family; Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.


Pssm-ID: 214665  Cd Length: 126  Bit Score: 49.57  E-value: 1.34e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1238280186   23 YKKPKLLYCSNGGHfLRILPDGTVDGTRDRSDQHTD 58
Cdd:smart00442   1 TKRLRQLYCRNGQH-LQILPDGTVDGTRDESSSFTI 35
beta-trefoil_FGF cd00058
FGF domain, beta-trefoil fold, found in acidic and basic fibroblast growth factor (FGF) ...
25-57 3.03e-08

FGF domain, beta-trefoil fold, found in acidic and basic fibroblast growth factor (FGF) superfamily; The FGF superfamily includes FGF1-23 and similar proteins. FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. They play essential roles in patterning and differentiation during vertebrate embryogenesis and have neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize, and their intracellular tyrosine kinase domains become active. The structure of FGFs is typical of the beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466989  Cd Length: 127  Bit Score: 46.04  E-value: 3.03e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1238280186  25 KPKLLYCSNGgHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd00058     1 RLVRLYSRTG-YFLQILPDGTVNGTKDENSPYA 32
beta-trefoil_FGF_RP1 cd23312
FGF domain, beta-trefoil fold, found in oxygen-regulated protein 1 (ORP1) and similar proteins; ...
28-56 1.76e-06

FGF domain, beta-trefoil fold, found in oxygen-regulated protein 1 (ORP1) and similar proteins; ORP1, also called retinitis pigmentosa 1 protein, or retinitis pigmentosa RP1 protein, is a microtubule-associated protein that regulates the stability and length of the microtubule-based axoneme of photoreceptors. It is required for the differentiation of photoreceptor cells. It plays a role in the organization of the outer segment of rod and cone photoreceptors ensuring the correct orientation and higher-order stacking of outer segment disks along the photoreceptor axoneme. Members in this family may contain one or two fibroblast growth factor (FGF) domain(s) in the middle region. The FGF domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466998  Cd Length: 128  Bit Score: 41.41  E-value: 1.76e-06
                          10        20
                  ....*....|....*....|....*....
gi 1238280186  28 LLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
Cdd:cd23312     7 QLYSKLTGQALRVKPDGSVDATGDKKDKF 35
beta-trefoil_FGF3-like cd23305
FGF domain, beta-trefoil fold, found in the fibroblast growth factor 3 (FGF3)-like family; The ...
27-54 3.34e-06

FGF domain, beta-trefoil fold, found in the fibroblast growth factor 3 (FGF3)-like family; The FGF3-like family includes FGF3-6. FGF3, also called heparin-binding growth factor 3 (HBGF3), or proto-oncogene Int-2, plays an important role in the regulation of embryonic development, cell proliferation, and cell differentiation. It is required for normal ear development. FGF3 interacts with fibroblast growth factor receptors, FGFR1 and FGFR2. FGF4, also called heparin secretory-transforming protein 1 (HST-1), or HSTF-1, or heparin-binding growth factor 4 (HBGF4), or transforming protein KS3, plays an important role in the regulation of embryonic development, cell proliferation, and cell differentiation. It is required for normal limb and cardiac valve development during embryogenesis. It interacts with FGFR1, FGFR2, FGFR3, and FGFR4. FGF5, also called heparin-binding growth factor 5 (HBGF5), or Smag-82, plays an important role in the regulation of cell proliferation and cell differentiation. It is required for normal regulation of the hair growth cycle. It functions as an inhibitor of hair elongation by promoting progression from anagen, the growth phase of the hair follicle, into catagen the apoptosis-induced regression phase. FGF5 interacts with FGFR1 and FGFR2. FGF6, also called heparin secretory-transforming protein 2 (HST-2), or HSTF-2, or heparin-binding growth factor 6 (HBGF6), plays an important role in the regulation of cell proliferation, cell differentiation, angiogenesis and myogenesis, and is required for normal muscle regeneration. FGF6 interacts with FGFR1, FGFR2, and FGFR4. Affinity between FGFs and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. Members in this family contain a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466991  Cd Length: 127  Bit Score: 40.75  E-value: 3.34e-06
                          10        20
                  ....*....|....*....|....*...
gi 1238280186  27 KLLYCSNGGHFLRILPDGTVDGTRDRSD 54
Cdd:cd23305     3 RLLYCRVIGFHLQILPDGSVNGTHEDTE 30
beta-trefoil_FGF9-like cd23308
FGF domain, beta-trefoil fold, found in the fibroblast growth factor 9 (FGF9)-like family; The ...
29-50 5.00e-05

FGF domain, beta-trefoil fold, found in the fibroblast growth factor 9 (FGF9)-like family; The FGF9-like family includes FGF9, FGF16, and FGF20. FGF9, also called glia-activating factor (GAF), or heparin-binding growth factor 9 (HBGF-9), plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation, and cell migration. It acts as a heparin-binding glia-activating factor that may have a role in glial cell growth and differentiation during development, gliosis during repair and regeneration of brain tissue after damage, differentiation and survival of neuronal cells, and growth stimulation of glial tumors. FGF9 interacts with fibroblast growth factor receptors, FGFR1, FGFR2, FGFR3, and FGFR4. FGF16 plays an important role in the regulation of embryonic development, cell proliferation and cell differentiation. It is required for normal cardiomyocyte proliferation and heart development. FGF16 interacts with FGFR1 and FGFR2. FGF20 acts as a neurotrophic factor that regulates central nervous development and function. It interacts with FGFR2 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. Members in this family contain a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466994  Cd Length: 130  Bit Score: 37.78  E-value: 5.00e-05
                          10        20
                  ....*....|....*....|..
gi 1238280186  29 LYCSNGGHfLRILPDGTVDGTR 50
Cdd:cd23308     5 LYCRTGFH-LEILPNGTVQGTR 25
beta-trefoil_FGF20 cd23327
FGF domain, beta-trefoil fold, found in fibroblast growth factor 20 (FGF20) and similar ...
29-50 4.77e-04

FGF domain, beta-trefoil fold, found in fibroblast growth factor 20 (FGF20) and similar proteins; FGF20 acts as a neurotrophic factor that regulates central nervous development and function. It interacts with fibroblast growth factor receptors, FGFR2 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. FGF20 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 467013  Cd Length: 153  Bit Score: 35.32  E-value: 4.77e-04
                          10        20
                  ....*....|....*....|..
gi 1238280186  29 LYCSNGGHfLRILPDGTVDGTR 50
Cdd:cd23327    14 LYCRTGFH-LEILPDGSVQGTR 34
beta-trefoil_FGF11-like cd23309
FGF domain, beta-trefoil fold, found in the fibroblast growth factor 11 (FGF11)-like family; ...
29-57 5.79e-04

FGF domain, beta-trefoil fold, found in the fibroblast growth factor 11 (FGF11)-like family; The FGF11-like family includes FGF11-14. FGF11, also called fibroblast growth factor homologous factor 3 (FHF3), may be involved in nervous system development and function. It plays roles in angiogenesis, tumorigenesis, adipogenesis, or liver regeneration. FGF12, also called fibroblast growth factor homologous factor 1 (FHF1), or myocyte-activating factor, is involved in nervous system development and function. It plays a role in the positive regulation of voltage-gated sodium channel activity. It promotes neuronal excitability by elevating the voltage dependence of neuronal sodium channel SCN8A fast inactivation. FGF12 interacts with the C-terminal region of SCN9A. FGF13, also called Fibroblast growth factor homologous factor 2 (FHF2), is a microtubule-binding protein which directly binds tubulin and is involved in both polymerization and stabilization of microtubules. Through its action on microtubules, it may participate in the refinement of axons by negatively regulating axonal and leading processes branching. FGF13 plays a crucial role in neuron polarization and migration in the cerebral cortex and the hippocampus. It may regulate voltage-gated sodium channels transport and function. It may also play a role in MAPK signaling. It is required for the development of axonal initial segment-targeting inhibitory GABAergic synapses made by chandelier neurons. FGF13 interacts with SCN1A, SCN5A, and SCN8A. It may also interact with SCN2A and SCN11A. FGF14, also called fibroblast growth factor homologous factor 4 (FH-4), may be involved in nervous system development and function. It interacts with SCN8A. Members in this family contain a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466995  Cd Length: 130  Bit Score: 35.08  E-value: 5.79e-04
                          10        20
                  ....*....|....*....|....*....
gi 1238280186  29 LYCSNGgHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd23309     6 LYSRQG-YYLQMQPDGTIDGTKDENSSYT 33
beta-trefoil_FGF_Bnl-like cd23311
FGF domain, beta-trefoil fold, found in Drosophila melanogaster protein branchless (Bnl) and ...
35-57 7.89e-04

FGF domain, beta-trefoil fold, found in Drosophila melanogaster protein branchless (Bnl) and similar proteins; Protein Bnl is a homolog of mammalian fibroblast growth factors. It is a dosage-sensitive regulator of terminal branching. It functions as a chemoattractant that can guide terminal branches to new tissues and even to individual cells within a tissue. Bnl contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 466997  Cd Length: 129  Bit Score: 34.51  E-value: 7.89e-04
                          10        20
                  ....*....|....*....|...
gi 1238280186  35 GHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd23311    12 NRYLQVNADGTVNGTTDSNSNDT 34
beta-trefoil_FGF12 cd23328
FGF domain, beta-trefoil fold, found in fibroblast growth factor 12 (FGF12) and similar ...
32-57 1.14e-03

FGF domain, beta-trefoil fold, found in fibroblast growth factor 12 (FGF12) and similar proteins; FGF12, also called fibroblast growth factor homologous factor 1 (FHF1), or myocyte-activating factor, is involved in nervous system development and function. It plays a role in the positive regulation of voltage-gated sodium channel activity. It promotes neuronal excitability by elevating the voltage dependence of neuronal sodium channel SCN8A fast inactivation. FGF12 interacts with the C-terminal region of SCN9A. FGF12 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 467014  Cd Length: 139  Bit Score: 34.23  E-value: 1.14e-03
                          10        20
                  ....*....|....*....|....*.
gi 1238280186  32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd23328    12 SQQGYFLQMHPDGTIDGTKDENSDYT 37
beta-trefoil_FGF14 cd23330
FGF domain, beta-trefoil fold, found in fibroblast growth factor 14 (FGF14) and similar ...
29-57 7.74e-03

FGF domain, beta-trefoil fold, found in fibroblast growth factor 14 (FGF14) and similar proteins; FGF14, also called fibroblast growth factor homologous factor 4 (FH-4), may be involved in nervous system development and function. It interacts with SCN8A. FGF14 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.


Pssm-ID: 467016  Cd Length: 145  Bit Score: 31.95  E-value: 7.74e-03
                          10        20
                  ....*....|....*....|....*....
gi 1238280186  29 LYCSNGgHFLRILPDGTVDGTRDRSDQHT 57
Cdd:cd23330    11 LYCRQG-YYLQMHPDGSLDGTKDDSSNST 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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