|
Name |
Accession |
Description |
Interval |
E-value |
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
19-606 |
0e+00 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 942.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 19 AFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPF 98
Cdd:pfam09726 74 AFSVFFVCIAFTSDIICLLFIPVQWLFFAASTYVWVQYVWHTEKGICLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPF 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 99 AAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQMLQKQEKEAEEAAKGLPDMDSSILiHHN 178
Cdd:pfam09726 154 AAHCIGYPVVTLGFGFKSYVSYKMRLRKQREVQKENEFYMQLLQQALPKEQQMLDRQERETSETAKGLSEVDPLAL-NQN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 179 GGIPANKKLSTTLPEIEYREKGKEKDKDAKKH-NLGINNNNILQPVDSKIQEIEYMENHINSKRLNND-LVGSTENLLKE 256
Cdd:pfam09726 233 GHSLNKKDSTLQLPELEYREKKNSGTSSGSDSkKSHNHNIHNLNHVDSKLQEKEYMENHSNSKRLNIStSPGSEEDLLVR 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 257 DSC--------TASSKNYKNAS----GVVNSSPRSHSATNGSIPSSSS-KNEKKQKC-TSKGPSAHKDLMENCIPNNQLS 322
Cdd:pfam09726 313 ESVssksssssSSSNKNYKNASggsaNSSNSSPRSHSHNSGSVTSSSSsKNSKKQKGpGGKSGARHKDPAENCIPNNQLS 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 323 KPDALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEK 402
Cdd:pfam09726 393 KPDALVRLEQDIKKLKAELQASRQTEQELRSQISSLTSLERSLKSELGQLRQENDLLQTKLHNAVSAKQKDKQTVQQLEK 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 403 KLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKV 482
Cdd:pfam09726 473 RLKAEQEARASAEKQLAEEKKRKKEEEATAARAVALAAASRGECTESLKQRKRELESEIKKLTHDIKLKEEQIRELEIKV 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 483 QELRKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVM 562
Cdd:pfam09726 553 QELRKYKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQIYQKDQEIKDLKQKIAEVM 632
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1243457532 563 AVMPSitysaaTSPLSPVSPHYSSKFVETSPSGLDPNASVYQPL 606
Cdd:pfam09726 633 AVMPS------TSRITPVTPHYSSKFMDTSPSMRDPNASVYPPL 670
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
318-560 |
5.80e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 5.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 318 NNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNI 397
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 398 SQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECtETLRSRIRELEAEGKKLTMDMKVKEEQI-- 475
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-KALREALDELRAELTLLNEEAANLRERLes 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 476 --RELELKVQELRKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFS----ALGDAKRQLEIAQGQILQKDQ 549
Cdd:TIGR02168 829 leRRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELRELES 908
|
250
....*....|.
gi 1243457532 550 EIKDLKQKIAE 560
Cdd:TIGR02168 909 KRSELRRELEE 919
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
327-568 |
8.38e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 8.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 327 LVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKA 406
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-------ANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 407 EQEARSFVEKQLmEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELR 486
Cdd:TIGR02168 307 LRERLANLERQL-EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 487 -KYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAkrQLEIAQGQILQKDQEIKDLKQKIAEVMAVM 565
Cdd:TIGR02168 386 sKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEAL 463
|
...
gi 1243457532 566 PSI 568
Cdd:TIGR02168 464 EEL 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
325-560 |
1.60e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 325 DALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 404
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTmdmKVKEEQIRELELKVQE 484
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---AAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1243457532 485 ---LRKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 560
Cdd:COG1196 410 ealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-560 |
8.04e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 8.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 329 RLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKAEQ 408
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL-------LAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 409 EARSFVEKQLmeekkrkkleeataaravafaaasrgectETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELR-K 487
Cdd:COG1196 309 ERRRELEERL-----------------------------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEaE 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1243457532 488 YKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 560
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
325-560 |
4.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 4.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 325 DALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 404
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVEKQLmEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQE 484
Cdd:TIGR02168 799 KALREALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 485 LRK-YKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQK---------------- 547
Cdd:TIGR02168 878 LLNeRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlseeysltleeae 957
|
250 260
....*....|....*....|....*.
gi 1243457532 548 -------------DQEIKDLKQKIAE 560
Cdd:TIGR02168 958 alenkieddeeeaRRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-562 |
1.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 327 LVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNaVQMKQKD------KQNISQL 400
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK-LEEALNDlearlsHSRIPEI 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 401 EKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTEtLRSRIRELEAEGKKLTMDMKVKEEQIRELEL 480
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID-LKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 481 KVQELRK-YKENEKDTEVLMSALSAMQDKTQHLENSLSaetriklDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIA 559
Cdd:TIGR02169 876 ALRDLESrLGDLKKERDELEAQLRELERKIEELEAQIE-------KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
...
gi 1243457532 560 EVM 562
Cdd:TIGR02169 949 EEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-560 |
1.40e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 329 RLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQ 408
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 409 EARSFVEKQLMEEKKRKkleeataaravafaaasrgectETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELRKY 488
Cdd:COG1196 379 EELEELAEELLEALRAA----------------------AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1243457532 489 KENEKDTEvlmsaLSAMQDKTQHLENSLSAETRIKLDLFSALGdAKRQLEIAQGQILQKDQEIKDLKQKIAE 560
Cdd:COG1196 437 EEEEEEAL-----EEAAEEEAELEEEEEALLELLAELLEEAAL-LEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
326-582 |
4.14e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 326 ALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTErgirsEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLK 405
Cdd:COG3206 176 ALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSE-----EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 406 AEQEARSFVekqlmeekkrkkleeataaravafaaaSRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQEL 485
Cdd:COG3206 251 SGPDALPEL---------------------------LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 486 RKYKENEKDTEV--LMSALSAMQDKTQHLENSLsAETRIKLDLFSA----LGDAKRQLEIAQG---QILQKDQEIkdlkq 556
Cdd:COG3206 304 RAQLQQEAQRILasLEAELEALQAREASLQAQL-AQLEARLAELPEleaeLRRLEREVEVARElyeSLLQRLEEA----- 377
|
250 260
....*....|....*....|....*.
gi 1243457532 557 KIAEVMAVMPSITYSAATSPLSPVSP 582
Cdd:COG3206 378 RLAEALTVGNVRVIDPAVVPLKPVSP 403
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
325-557 |
2.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 325 DALVRLEQDIKKLkADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQEneLLQNKLHNAVQMKQKDKQNISQLEKKL 404
Cdd:COG4913 242 EALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVEKQLMEekkrkkleeataaravafaaaSRGECTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQE 484
Cdd:COG4913 319 DALREELDELEAQIRG---------------------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1243457532 485 LRKykenekdtevlmsALSAMQDKTQHLENSLSAETRiklDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQK 557
Cdd:COG4913 378 SAE-------------EFAALRAEAAALLEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
330-560 |
3.96e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 330 LEQDIKKLKADLQASRQVEQELRSQ----------ISALSSTERGIRSEMGQLR---QENELLQNKLHNAVQMKQKDKQN 396
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKekeleevlreINEISSELPELREELEKLEkevKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 397 ISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASrgECTETLRSRIRELEAEGKKLTMDMKVKEEQIR 476
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS--EFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 477 ELELKVQELR----KYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDlfsALGDAKRQLEIAQGQILQKDQEIK 552
Cdd:PRK03918 332 ELEEKEERLEelkkKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL---TPEKLEKELEELEKAKEEIEEEIS 408
|
....*...
gi 1243457532 553 DLKQKIAE 560
Cdd:PRK03918 409 KITARIGE 416
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
311-559 |
6.33e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 311 LMENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERgIRSEMGQLRQENELLQNKLhnAVQMK 390
Cdd:TIGR00618 205 LLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQE--AVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 391 QKDKQNISQLEKKLKAEQEARSFVEKQlmeekkrkkleeataaravafaaasRGECTETLRSRIRELEAEGKKLTMDMKV 470
Cdd:TIGR00618 282 TQERINRARKAAPLAAHIKAVTQIEQQ-------------------------AQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 471 KEEQIRELELKVQELRKYKENEKDTEVLMSALsAMQDKTQHLENSLSAETRIK---LDLFSALGDAKRQLEIAQGQILQK 547
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIR-EISCQQHTLTQHIHTLQQQKttlTQKLQSLCKELDILQREQATIDTR 415
|
250
....*....|..
gi 1243457532 548 DQEIKDLKQKIA 559
Cdd:TIGR00618 416 TSAFRDLQGQLA 427
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
332-595 |
1.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 332 QDIKKLKADLQasrqveqELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQEAR 411
Cdd:COG4942 20 DAAAEAEAELE-------QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 412 SFVEKQLMEEKKRKKLEEATAARAVAFAAA----SRGECTETLRSRIREleaegKKLTMDMKVKEEQIRELELKVQELRK 487
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLalllSPEDFLDAVRRLQYL-----KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 488 YKENEKDTevLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMPS 567
Cdd:COG4942 168 ELEAERAE--LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250 260
....*....|....*....|....*....
gi 1243457532 568 ITYSAATSPLS-PVSPHYSSKFVETSPSG 595
Cdd:COG4942 246 AGFAALKGKLPwPVSGRVVRRFGERDGGG 274
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
337-561 |
2.33e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 337 LKADLQA-----SRQVEQELRSQISALSST-------ERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 404
Cdd:pfam12128 583 VKLDLKRidvpeWAASEEELRERLDKAEEAlqsarekQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEK 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEArsfVEKQLMEEKKRKKLeeataaravafaaasrgectetlrsRIRELEAEGKKLTMDMKVKEEQIRE--LELKV 482
Cdd:pfam12128 663 QSEKDK---KNKALAERKDSANE-------------------------RLNSLEAQLKQLDKKHQAWLEEQKEqkREART 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 483 QELRKYKENEKDTEVLMSALSAMQDK--TQHLENSLSAETRIKLDLFSalgdakrqLEIAQGQILQKDQEIKDLKQKIAE 560
Cdd:pfam12128 715 EKQAYWQVVEGALDAQLALLKAAIAArrSGAKAELKALETWYKRDLAS--------LGVDPDVIAKLKREIRTLERKIER 786
|
.
gi 1243457532 561 V 561
Cdd:pfam12128 787 I 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
380-564 |
9.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 9.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 380 QNKLHNAVQMKQKDKQNISQLEKKLKAEQEARSFVEKQLmeekkrkkleeataaravafaaasrgectETLRSRIRELEA 459
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-----------------------------AALERRIAALAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 460 EGKKLTMDMKVKEEQIRELELKVQELRKYKENEKdtEVLMSALSAMQdktqhlenSLSAETRIKLdLFSA--LGDAKRQL 537
Cdd:COG4942 70 RIRALEQELAALEAELAELEKEIAELRAELEAQK--EELAELLRALY--------RLGRQPPLAL-LLSPedFLDAVRRL 138
|
170 180
....*....|....*....|....*..
gi 1243457532 538 EIAQGQILQKDQEIKDLKQKIAEVMAV 564
Cdd:COG4942 139 QYLKYLAPARREQAEELRADLAELAAL 165
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
450-519 |
1.63e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 1.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1243457532 450 LRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELRK--YKENEKDTEVlmsalSAMQDKTQHLENSLSAE 519
Cdd:COG2433 418 LEEQVERLEAEVEELEAELEEKDERIERLERELSEARSeeRREIRKDREI-----SRLDREIERLERELEEE 484
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
451-564 |
2.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 451 RSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELRK----------YKENEKDTEVLMSALSAMQDKTQHLENSLS--- 517
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlaeYSWDEIDVASAEREIAELEAELERLDASSDdla 688
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1243457532 518 -AETRIKlDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAV 564
Cdd:COG4913 689 aLEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
325-563 |
2.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 325 DALVRLEQDIKKLKADLQASRQVEQELRSQISALSstergirsemgQLRQENELLQNKLHNAVQMKQKDKQnISQLEKKL 404
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQ-----------ERREALQRLAEYSWDEIDVASAERE-IAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVekqlmeekkrkkleeataaravafaaasrgectETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQE 484
Cdd:COG4913 678 ERLDASSDDL---------------------------------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 485 LRkykenekdtevlmSALSAMQDKTQHLENSLSAETRIKLD-LFSALGDAKRQLEIA---QGQILQKDQEIKDLKQKIAE 560
Cdd:COG4913 725 AE-------------EELDELQDRLEAAEDLARLELRALLEeRFAAALGDAVERELRenlEERIDALRARLNRAEEELER 791
|
...
gi 1243457532 561 VMA 563
Cdd:COG4913 792 AMR 794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
330-518 |
2.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 330 LEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNiSQLEKKLKAEQE 409
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQ-PPLALLLSPEDF 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 410 ARSFVEKQLMEEKKRKKLEEATAARAVafaaasrgecTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELRKY- 488
Cdd:COG4942 132 LDAVRRLQYLKYLAPARREQAEELRAD----------LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLl 201
|
170 180 190
....*....|....*....|....*....|
gi 1243457532 489 KENEKDTEVLMSALSAMQDKTQHLENSLSA 518
Cdd:COG4942 202 ARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
347-561 |
2.68e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 347 VEQELRSQISALSSTERGIRSEMGQLRQENELLQNKL------HNAVQMKQKDK---QNISQLEKKLKAEQEARSFVEKQ 417
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALeefrqkNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 418 LmeekkrkkleeataaravafaaasrgectETLRSRIRELEAEGKKLTMDMKVKE--EQIRELELKVQELR-KYKENEKD 494
Cdd:COG3206 242 L-----------------------------AALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSaRYTPNHPD 292
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1243457532 495 TEVLMSALSAmqdktqhLENSLSAETRikldlfSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEV 561
Cdd:COG3206 293 VIALRAQIAA-------LRAQLQQEAQ------RILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
322-501 |
3.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 322 SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTER--GIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQ 399
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEERLEELRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 400 LEkKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAfaaasrgectETLRSRIRELEAEGKKLTMDMKVKEEQIRELE 479
Cdd:COG4717 165 LE-ELEAELAELQEELEELLEQLSLATEEELQDLAEEL----------EELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180
....*....|....*....|..
gi 1243457532 480 LKVQELRKYKENEKDTEVLMSA 501
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIA 255
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-563 |
5.71e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 327 LVRLEQDIKKLKADLQASRQVEQ-ELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLK 405
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 406 AEQEARSfvekQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTmdmKVKEEQIRELELKVQEL 485
Cdd:TIGR02169 347 EERKRRD----KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---ELKRELDRLQEELQRLS 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1243457532 486 RKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMA 563
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
330-403 |
6.98e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 38.94 E-value: 6.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1243457532 330 LEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKK 403
Cdd:COG4026 133 LREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
325-514 |
7.54e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 325 DALVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEmgqLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 404
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE---LAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRgectETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQE 484
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA----ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
170 180 190
....*....|....*....|....*....|
gi 1243457532 485 LRKYKENEKDTEVLMSALSAMQDKTQHLEN 514
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
327-561 |
8.56e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 38.73 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 327 LVRLEQDIKKLKADLQASRQVEQELRSQISALSSTERGIRSEMGQLRQENELLQnklhnavQMKQKDKQNISQLEKKLKA 406
Cdd:COG4372 75 LEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLE-------QQRKQLEAQIAELQSEIAE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 407 EQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRgecTETLRSRIRELEAEGKKLTMDMKVKEEQIRELELKVQELR 486
Cdd:COG4372 148 REEELKELEEQLESLQEELAALEQELQALSEAEAEQA---LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAK 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1243457532 487 KYKE--NEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEV 561
Cdd:COG4372 225 DSLEakLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALL 301
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
123-568 |
9.30e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.26 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 123 RLRKQKEVQKENEFYMQLLQQALppeqqMLQKQEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTLPEIEyREKGKE 202
Cdd:TIGR00606 516 KLRKLDQEMEQLNHHTTTRTQME-----MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS-KEINQT 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 203 KDKDAKkhnlginnnnilqpVDSKIQEIEYMENHINS--KRLNNDLVGSTENLLKEDSCTASSKNYKNASGVVNSSPRSH 280
Cdd:TIGR00606 590 RDRLAK--------------LNKELASLEQNKNHINNelESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR 655
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 281 SATNGS-------IPSSSSKNEKKQKCTSKGPSAHKDLME--NCIPNNQLSKPDALVRLEQDIKKL---------KADLQ 342
Cdd:TIGR00606 656 AMLAGAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEfiSDLQSKLRLAPDKLKSTESELKKKekrrdemlgLAPGR 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 343 AS--RQVEQELRSQISALSSTERGIRSEMGQLRQENELLQN---KLHNA------------VQMKQKD-KQNISQLEKKL 404
Cdd:TIGR00606 736 QSiiDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTimpEEESAkvcltdvtimerFQMELKDvERKIAQQAAKL 815
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 405 KAEQEARSFVE-KQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRSRIRELEAEGKKLTMDMKVK---EEQIRELEL 480
Cdd:TIGR00606 816 QGSDLDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRqqfEEQLVELST 895
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243457532 481 KVQEL-RKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKD--LKQK 557
Cdd:TIGR00606 896 EVQSLiREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDdyLKQK 975
|
490
....*....|.
gi 1243457532 558 IAEVMAVMPSI 568
Cdd:TIGR00606 976 ETELNTVNAQL 986
|
|
| |
