|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
46-299 |
3.09e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.59 E-value: 3.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 46 YSQLGNAYFYLKEYARALQFHKHDLLLARtigdrmGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQgdkvgeARA 125
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 126 LYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTF 205
Cdd:COG0457 79 LNNLGLALQALGR--------------------YEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 206 HKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEY 285
Cdd:COG0457 133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
250
....*....|....
gi 1243938410 286 HLRHLVIAQELADR 299
Cdd:COG0457 207 LRKKLAILTLAALA 220
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
184-255 |
1.70e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.70 E-value: 1.70e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1243938410 184 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEF--GDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQ 255
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
471-492 |
2.57e-07 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 47.03 E-value: 2.57e-07
|
| GoLoco |
pfam02188 |
GoLoco motif; |
524-544 |
1.76e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.76e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
470-492 |
1.84e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.72 E-value: 1.84e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
606-627 |
1.86e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.86e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
571-593 |
1.92e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.72 E-value: 1.92e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
572-592 |
1.96e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.96e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
523-545 |
3.81e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 40.95 E-value: 3.81e-05
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
17-408 |
9.40e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 45.68 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 17 KAGDFKAGVAFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLKEYARALQfhkhdllLARTIGDRMGEAK------- 84
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARE-------LDEDTLERQRRVLglgedhp 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 85 ----ASGNLGNTLKVLGRFDEAivccqrhLDIAQEqgdkvgearalynignvyhakgkqlSWNAAQDPghLPPDVRETLh 160
Cdd:NF040586 476 htlmTAGGLGADLRALGRFREA-------LELDEE-------------------------TLERHRRV--FGEDHPRTL- 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 161 rasefyernlslvkelgdraaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFG--DKAAERRAYSNLGNAHIFLGR 238
Cdd:NF040586 521 -----------------------RAANNLAVSLRLLGDYREALELDREVLRRRRRVLgpDHPRTLLSANNLARDLRELGR 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 239 FDVAAEHYKKTLQLSRQLR---DQAVEAQACYSLGNTYTLLQDYERAAEYHLRhlvIAQELADRVGEG----RAC-WSLG 310
Cdd:NF040586 578 YAEALDLLEEALERYREVLggpDHPDTLRAAKSLAVALRRAGRLEEALELAED---TYERYRRRFGPDhpdtLAAaLSLA 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 311 NAYVSMGSPAQALTFAKKHLQISQEigdRNGE-----LTARMNIAHLQLALGRltsPAAAEkpdlagyeaqgarpkrtqR 385
Cdd:NF040586 655 NDLRALGDADEARELAREVLDRYRR---VLGEdhpftLACRNNLAVLLRALGD---PEEAR------------------E 710
|
410 420
....*....|....*....|...
gi 1243938410 386 LSAETWDLLrlpldREQNGETHH 408
Cdd:NF040586 711 LAEAALEGL-----RERLGPDHP 728
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
605-627 |
1.17e-04 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 39.41 E-value: 1.17e-04
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
267-335 |
2.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 2.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1243938410 267 YSLGNTYTLLQDYERAAEYHLRHLVIAQEL--ADRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQE 335
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
83-115 |
4.70e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.70e-04
10 20 30
....*....|....*....|....*....|...
gi 1243938410 83 AKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQE 115
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
97-289 |
7.97e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.30 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 97 GRFDEAIVccqrHLDIAQEQGDKVGEARalYNIGNVYHAKGKQLS----WNAAQDPGHLPPDVRETLHRA---SEFYERN 169
Cdd:TIGR02917 36 NKYKAAII----QLKNALQKDPNDAEAR--FLLGKIYLALGDYAAaekeLRKALSLGYPKNQVLPLLARAyllQGKFQQV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 170 LSLV--KELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIakefgdkaAERRAYSNLGNAHIFL--GRFDVAAEH 245
Cdd:TIGR02917 110 LDELpgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALaeNRFDEARAL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1243938410 246 YKKTLQLSRQLRDQ-AVEAQACYSLGNTYTLLQDYERAAEYHLRH 289
Cdd:TIGR02917 182 IDEVLTADPGNVDAlLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
46-299 |
3.09e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.59 E-value: 3.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 46 YSQLGNAYFYLKEYARALQFHKHDLLLARtigdrmGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQgdkvgeARA 125
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 126 LYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTF 205
Cdd:COG0457 79 LNNLGLALQALGR--------------------YEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 206 HKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEY 285
Cdd:COG0457 133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
250
....*....|....
gi 1243938410 286 HLRHLVIAQELADR 299
Cdd:COG0457 207 LRKKLAILTLAALA 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
82-366 |
3.30e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.59 E-value: 3.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 82 EAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEqgdkvgEARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHR 161
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 162 ASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDV 241
Cdd:COG0457 61 ALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 242 AAEHYKKTLQLSRQLrdqaveAQACYSLGNTYTLLQDYERAAEYHLRHLviAQELADRVGEGRACWSLGNAYVSMGSPAQ 321
Cdd:COG0457 129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALL 200
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1243938410 322 ALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTSPAAAE 366
Cdd:COG0457 201 LALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
122-401 |
5.89e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.74 E-value: 5.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 122 EARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERNLSLVKELGDraaqgrAYGNLGNTHYLLGNFTE 201
Cdd:COG0457 7 DAEAYNNLGLAYRRLGR--------------------YEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 202 ATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLrdqaveAQACYSLGNTYTLLQDYER 281
Cdd:COG0457 61 ALADYEQALELDPDDAE------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 282 AAEYHLRHLVIAQELADrvgegrACWSLGNAYVSMGSPAQALTFAKKHLQisQEIGDRNGELTARMNIAHLQLALGRLTS 361
Cdd:COG0457 129 AIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEA--AALAALLAAALGEAALALAAAEVLLALL 200
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1243938410 362 PAAAEKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLDRE 401
Cdd:COG0457 201 LALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
10-331 |
1.33e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 10 LEGERLCKAGDFKAGVAFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLKEYARALQFHKHdlLLARTiGDRmgeAKASGNL 89
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQK--LLERD-PDR---AEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 90 GNTLKVLGRFDEAIVCCQRHLDIAQEQgdkvgeARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERn 169
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDD------AEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 170 lsLVKELGDRAaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFgdkaaeRRAYSNLGNAHIFLGRFDVAAEHYKKT 249
Cdd:COG2956 136 --LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 250 LQLSRQLrdqaveAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVgegracwSLGNAYVSMGSPAQALTFAKKH 329
Cdd:COG2956 205 LEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271
|
..
gi 1243938410 330 LQ 331
Cdd:COG2956 272 LR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
8-252 |
2.97e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.64 E-value: 2.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 8 LALEGERLCKAGDFKAGVAFFEAAVQvGTEDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIGDRMGEAKASG 87
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALA-AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 88 NLGNTLKVLGRFDEAIVCCQRHLDIAqeqgdkVGEARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYE 167
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGR--------------------LEEALAALR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 168 RNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYK 247
Cdd:COG3914 137 RALAL------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGRLEEAIAAYR 204
|
....*
gi 1243938410 248 KTLQL 252
Cdd:COG3914 205 RALEL 209
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
184-255 |
1.70e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.70 E-value: 1.70e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1243938410 184 RAYGNLGNTHYLLGNFTEATTFHKERLAIAKEF--GDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQ 255
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
161-359 |
6.04e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.24 E-value: 6.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 161 RASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFD 240
Cdd:COG3914 16 ALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 241 VAAEHYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADrvgegrACWSLGNAYVSMGSPA 320
Cdd:COG3914 96 EALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLE 163
|
170 180 190
....*....|....*....|....*....|....*....
gi 1243938410 321 QALTFAKKHLQIsqeigdRNGELTARMNIAHLQLALGRL 359
Cdd:COG3914 164 EAIAALRRALEL------DPDNAEALNNLGNALQDLGRL 196
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
99-401 |
1.36e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 58.33 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 99 FDEAIVCCQRHLDIAQEQGDKVGEARALYNIGNVYHAKGKqlswnaaqdpghlPPDVRETLHRASEFYERNLSLVKELGD 178
Cdd:COG3899 721 YAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGR-------------FEEAEALLERALAARALAALAALRHGN 787
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 179 RAAQGRAYGNLGntHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRD 258
Cdd:COG3899 788 PPASARAYANLG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 259 QAVEAQACYSLGNTyTLLQDYERAAEYHLRHLVIAQELADRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGD 338
Cdd:COG3899 866 AALALLALAAAAAA-AAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAA 944
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1243938410 339 RNGELTARMNIAHLQLALGRLTSPAAAEKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLDRE 401
Cdd:COG3899 945 LAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAA 1007
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
37-262 |
2.29e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.31 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 37 EDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTigdrmgEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQ 116
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 117 gdkvgeARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLL 196
Cdd:COG3914 146 ------AEAYLNLGEALRRLGR--------------------LEEAIAALRRALEL------DPDNAEALNNLGNALQDL 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1243938410 197 GNFTEATTFHKERLAIAKEFgdkaaeRRAYSNLgnahIFLGRFDVAAEHYKKTLQLSRQLRDQAVE 262
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDN------ADAHSNL----LFALRQACDWEVYDRFEELLAALARGPSE 249
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
180-335 |
5.97e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 180 AAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQlrdq 259
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1243938410 260 avEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADrvgegrACWSLGNAYVSMGSPAQALTFAKKHLQISQE 335
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
471-492 |
2.57e-07 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 47.03 E-value: 2.57e-07
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
12-138 |
1.60e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 12 GERLCKAGDFKAGVAFFEAAVQVGTEDlktlSAIYSQLGNAYFYLKEYARALQfhkhdlLLARTIGDRMGEAKASGNLGN 91
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALE------DYDKALELDPDDAEALYNLGL 118
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1243938410 92 TLKVLGRFDEAIVCCQRHLDIaqeqgdKVGEARALYNIGNVYHAKGK 138
Cdd:COG0457 119 ALLELGRYDEAIEAYERALEL------DPDDADALYNLGIALEKLGR 159
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
224-295 |
2.25e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 2.25e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1243938410 224 RAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLR--DQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQE 295
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
151-395 |
4.40e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 50.24 E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 151 LPPDVRETLH-RASEFYERNLSLVKEL------------GDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFG 217
Cdd:COG3899 660 LPPEERRALHrRIARALEARGPEPLEErlfelahhlnraGERDRAARLLLRAARRALARGAYAEALRYLERALELLPPDP 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 218 DKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQL-------SRQLRDQAVEAQACYSLGntYTLLQDYERAAEYHLRHL 290
Cdd:COG3899 740 EEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLG--LLLLGDYEEAYEFGELAL 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 291 VIAQELADRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTSPAAAEKPDL 370
Cdd:COG3899 818 ALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLL 897
|
250 260
....*....|....*....|....*
gi 1243938410 371 AGYEAQGARPKRTQRLSAETWDLLR 395
Cdd:COG3899 898 AAAAAALAAAAAAAALAAAELARLA 922
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
83-139 |
6.47e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.30 E-value: 6.47e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1243938410 83 AKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQ--GDKVGEARALYNIGNVYHAKGKQ 139
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRY 61
|
|
| GoLoco |
pfam02188 |
GoLoco motif; |
524-544 |
1.76e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.76e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
470-492 |
1.84e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.72 E-value: 1.84e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
606-627 |
1.86e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.86e-05
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
571-593 |
1.92e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 41.72 E-value: 1.92e-05
|
| GoLoco |
pfam02188 |
GoLoco motif; |
572-592 |
1.96e-05 |
|
GoLoco motif;
Pssm-ID: 460481 Cd Length: 22 Bit Score: 41.64 E-value: 1.96e-05
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
123-215 |
2.50e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 123 ARALYNIGNVYHAKGKqlswnaaqdpghlppdvretLHRASEFYERNLSLVKEL--GDRAAQGRAYGNLGNTHYLLGNFT 200
Cdd:pfam13424 3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62
|
90
....*....|....*
gi 1243938410 201 EATTFHKERLAIAKE 215
Cdd:pfam13424 63 EALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
6-457 |
3.07e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.55 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 6 LELALE-GERLCKAGDFKAGVAFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIG 77
Cdd:COG3899 745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 78 DRMGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEARALYnignvyhakgkQLSWNAAQDPGHLPPDVRE 157
Cdd:COG3899 825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA-----------AAAAAAAAAAALAAAAAAA 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 158 TLHRASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLG 237
Cdd:COG3899 894 ARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALA 973
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 238 RFDVAAEHY---KKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEGRACWSLGNAYV 314
Cdd:COG3899 974 AAAAAAAAAaaaAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAA 1053
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 315 SMGSPAQALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTSPAAAEKPDLAGYEAQGARPKRTQRLSAETWDLL 394
Cdd:COG3899 1054 AAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAA 1133
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1243938410 395 RLPLDREQNGETHHTGDWRGPGRDSLPLPMRSRKYQEGPDAIERRPREGSHSPLDSADVRVQV 457
Cdd:COG3899 1134 ALLLLAAALALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALL 1196
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
523-545 |
3.81e-05 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 40.95 E-value: 3.81e-05
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
42-115 |
4.59e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 4.59e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1243938410 42 LSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTI--GDRMGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQE 115
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
220-359 |
5.65e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 220 AAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYhlrhlvIAQELADR 299
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVL------LHEALELD 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 300 VGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDrngeltARMNIAHLQLALGRL 359
Cdd:COG4783 69 PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRP 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
7-138 |
9.03e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 9.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 7 ELALEGERLCKAGDFKAGVAFFEAAVQVGTEDLktlsAIYSQLGNAYFYLKEYARALQFHKHDLLLARtigdrmGEAKAS 86
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1243938410 87 GNLGNTLKVLGRFDEAIVCCQRHLDIAQEQgdkvgeARALYNIGNVYHAKGK 138
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGR 121
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
176-293 |
9.20e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 9.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 176 LGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQ 255
Cdd:COG5010 47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------LYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110
....*....|....*....|....*....|....*...
gi 1243938410 256 lrdqavEAQACYSLGNTYTLLQDYERAAEYHLRHLVIA 293
Cdd:COG5010 121 ------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
17-408 |
9.40e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 45.68 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 17 KAGDFKAGVAFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLKEYARALQfhkhdllLARTIGDRMGEAK------- 84
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARE-------LDEDTLERQRRVLglgedhp 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 85 ----ASGNLGNTLKVLGRFDEAivccqrhLDIAQEqgdkvgearalynignvyhakgkqlSWNAAQDPghLPPDVRETLh 160
Cdd:NF040586 476 htlmTAGGLGADLRALGRFREA-------LELDEE-------------------------TLERHRRV--FGEDHPRTL- 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 161 rasefyernlslvkelgdraaqgRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFG--DKAAERRAYSNLGNAHIFLGR 238
Cdd:NF040586 521 -----------------------RAANNLAVSLRLLGDYREALELDREVLRRRRRVLgpDHPRTLLSANNLARDLRELGR 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 239 FDVAAEHYKKTLQLSRQLR---DQAVEAQACYSLGNTYTLLQDYERAAEYHLRhlvIAQELADRVGEG----RAC-WSLG 310
Cdd:NF040586 578 YAEALDLLEEALERYREVLggpDHPDTLRAAKSLAVALRRAGRLEEALELAED---TYERYRRRFGPDhpdtLAAaLSLA 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 311 NAYVSMGSPAQALTFAKKHLQISQEigdRNGE-----LTARMNIAHLQLALGRltsPAAAEkpdlagyeaqgarpkrtqR 385
Cdd:NF040586 655 NDLRALGDADEARELAREVLDRYRR---VLGEdhpftLACRNNLAVLLRALGD---PEEAR------------------E 710
|
410 420
....*....|....*....|...
gi 1243938410 386 LSAETWDLLrlpldREQNGETHH 408
Cdd:NF040586 711 LAEAALEGL-----RERLGPDHP 728
|
|
| GoLoco |
smart00390 |
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins |
605-627 |
1.17e-04 |
|
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
Pssm-ID: 214645 Cd Length: 23 Bit Score: 39.41 E-value: 1.17e-04
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
265-299 |
1.99e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.06 E-value: 1.99e-04
10 20 30
....*....|....*....|....*....|....*
gi 1243938410 265 ACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADR 299
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
267-335 |
2.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 2.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1243938410 267 YSLGNTYTLLQDYERAAEYHLRHLVIAQEL--ADRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQE 335
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
122-305 |
2.86e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 122 EARALYNIGNVYHAKGKqlsWNAAqdpghlppdvRETLHRAsefyernLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTE 201
Cdd:COG4785 72 LAQLYYERGVAYDSLGD---YDLA----------IADFDQA-------LEL------DPDLAEAYNNRGLAYLLLGDYDA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 202 AttfhkerlaiAKEFgDKAAERR-----AYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYslgntytLL 276
Cdd:COG4785 126 A----------LEDF-DRALELDpdyayAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE-------RK 187
|
170 180
....*....|....*....|....*....
gi 1243938410 277 QDYERAAEYHLRHLVIAQELADRVGEGRA 305
Cdd:COG4785 188 LDPEKALALLLEDWATAYLLQGDTEEARE 216
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
83-115 |
3.67e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 3.67e-04
10 20 30
....*....|....*....|....*....|...
gi 1243938410 83 AKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQE 115
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
83-115 |
4.70e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.70e-04
10 20 30
....*....|....*....|....*....|...
gi 1243938410 83 AKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQE 115
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
161-258 |
6.46e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 6.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 161 RASEFYERNLSLvkelgdRAAQGRAYGNLGNTHYLLGNFTEATTFHKerlAIAKEFGDKaaerRAYSNLGNAHIFLGRFD 240
Cdd:COG3063 10 EAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNA----EALLNLAELLLELGDYD 76
|
90
....*....|....*...
gi 1243938410 241 VAAEHYKKTLQLSRQLRD 258
Cdd:COG3063 77 EALAYLERALELDPSALR 94
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
224-252 |
9.53e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 9.53e-04
10 20
....*....|....*....|....*....
gi 1243938410 224 RAYSNLGNAHIFLGRFDVAAEHYKKTLQL 252
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
224-333 |
9.69e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 224 RAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQEladrvgEG 303
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALDPD------NP 85
|
90 100 110
....*....|....*....|....*....|
gi 1243938410 304 RACWSLGNAYVSMGSPAQALTFAKKHLQIS 333
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
12-182 |
1.06e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 12 GERLCKAGDFKAGVAFFEAAVQVGTEDlktlSAIYSQLGNAYFYLKEYARALQFHKHDLLLARtigdrmGEAKASGNLGN 91
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDP------DDADALYNLGI 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 92 TLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEARALYNIGNVYHAKGKQLSWNAAQDPGHLPPDVRETLHRASEFYERNLS 171
Cdd:COG0457 153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
170
....*....|.
gi 1243938410 172 LVKELGDRAAQ 182
Cdd:COG0457 233 LRLAALALYQY 243
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
232-335 |
1.41e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 232 AHIFLGRFDVAAEHYKKTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEYHlRHLVIAQELADrvgegrACWSLGN 311
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAE------ALLNLAE 67
|
90 100
....*....|....*....|....
gi 1243938410 312 AYVSMGSPAQALTFAKKHLQISQE 335
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
172-285 |
1.54e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 172 LVKELGDRAAQ----GRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDVAAEHYK 247
Cdd:COG4235 2 AIARLRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110
....*....|....*....|....*....|....*...
gi 1243938410 248 KTLQLSRQlrdqavEAQACYSLGNTYTLLQDYERAAEY 285
Cdd:COG4235 76 RALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
193-285 |
2.23e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 193 HYLLGNFTEATTFHKERLAIAKEFGDkaaerrAYSNLGNAHIFLGRFDvAAEHYKKTLQLSRQlrdqavEAQACYSLGNT 272
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYD-EAIALEKALKLDPN------NAEALLNLAEL 68
|
90
....*....|...
gi 1243938410 273 YTLLQDYERAAEY 285
Cdd:COG3063 69 LLELGDYDEALAY 81
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
197-359 |
2.64e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 197 GNFTEATTFHKERLAIAKEfgDKAAER-RAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNTYTl 275
Cdd:pfam17874 15 GDAERALELAEQALALLPE--DDLLARgLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILR- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 276 LQDYERAAEYHLRHlviAQELADRVGE------GRACWSLGNAYVSMGSPAQALTFAKKHLQISQEiGDRNGELTARMNI 349
Cdd:pfam17874 92 AQGRLHQALETYQQ---ALQLARDHGLqhlplhGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVLL 167
|
170
....*....|
gi 1243938410 350 AHLQLALGRL 359
Cdd:pfam17874 168 ARIALAQGEL 177
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
232-328 |
3.24e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 232 AHIFLGRFDVAAEHYKktlQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRhlvIAQELADRVGEGRACWSLGN 311
Cdd:COG1729 2 ALLKAGDYDEAIAAFK---AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75
|
90
....*....|....*..
gi 1243938410 312 AYVSMGSPAQALTFAKK 328
Cdd:COG1729 76 SYLELGDYDKARATLEE 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
17-115 |
3.97e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 17 KAGDFKAGVAFFEAAVQVGTEDlktlSAIYSQLGNAYFYLKEYARALQFHKhdlllARTIGDRMGEAKAsgNLGNTLKVL 96
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAEALL--NLAELLLEL 72
|
90
....*....|....*....
gi 1243938410 97 GRFDEAIVCCQRHLDIAQE 115
Cdd:COG3063 73 GDYDEALAYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
171-251 |
4.13e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 171 SLVKELGDRAAQGRAYGNLGNTHYLLGNFTEA-TTFhkerLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKT 249
Cdd:COG1729 18 AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAaEAF----EKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEEL 93
|
..
gi 1243938410 250 LQ 251
Cdd:COG1729 94 IK 95
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
263-295 |
6.97e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 6.97e-03
10 20 30
....*....|....*....|....*....|...
gi 1243938410 263 AQACYSLGNTYTLLQDYERAAEYHLRHLVIAQE 295
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
97-289 |
7.97e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.30 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 97 GRFDEAIVccqrHLDIAQEQGDKVGEARalYNIGNVYHAKGKQLS----WNAAQDPGHLPPDVRETLHRA---SEFYERN 169
Cdd:TIGR02917 36 NKYKAAII----QLKNALQKDPNDAEAR--FLLGKIYLALGDYAAaekeLRKALSLGYPKNQVLPLLARAyllQGKFQQV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243938410 170 LSLV--KELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIakefgdkaAERRAYSNLGNAHIFL--GRFDVAAEH 245
Cdd:TIGR02917 110 LDELpgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALaeNRFDEARAL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1243938410 246 YKKTLQLSRQLRDQ-AVEAQACYSLGNTYTLLQDYERAAEYHLRH 289
Cdd:TIGR02917 182 IDEVLTADPGNVDAlLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
|
|
| |
