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Conserved domains on  [gi|1335348675|ref|NP_001347057|]
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small ribosomal subunit protein eS19 isoform e [Mus musculus]

Protein Classification

eS19 family ribosomal protein( domain architecture ID 3751)

eS19 family ribosomal protein such as human 40S ribosomal protein S19, and fungi 40S ribosomal protein S19

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S19e super family cl00969
Ribosomal protein S19e;
5-71 6.69e-39

Ribosomal protein S19e;


The actual alignment was detected with superfamily member pfam01090:

Pssm-ID: 470014  Cd Length: 137  Bit Score: 126.40  E-value: 6.69e-39
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1335348675   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVG 67
 
Name Accession Description Interval E-value
Ribosomal_S19e pfam01090
Ribosomal protein S19e;
5-71 6.69e-39

Ribosomal protein S19e;


Pssm-ID: 460058  Cd Length: 137  Bit Score: 126.40  E-value: 6.69e-39
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1335348675   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVG 67
RPS19A COG2238
Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 4-68 1.07e-20

Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19E (S16A) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441839  Cd Length: 151  Bit Score: 80.64  E-value: 1.07e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1335348675   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRG 68
Cdd:COG2238     2 VTVYDVPADLLIERLAEYLKEVDEIEPPEWAEFVKTGVHKERPPEQEDWWYVRAASLLRKVYLDG 66
PRK09333 PRK09333
30S ribosomal protein S19e; Provisional
 4-71 4.67e-20

30S ribosomal protein S19e; Provisional


Pssm-ID: 236470  Cd Length: 150  Bit Score: 78.74  E-value: 4.67e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1335348675   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:PRK09333    2 VTVYDVPADLLIERLAEYLKNVDEIKPPEWAAFVKTGVHKERPPEQEDWWYVRAASILRKVYIDGPVG 69
 
Name Accession Description Interval E-value
Ribosomal_S19e pfam01090
Ribosomal protein S19e;
5-71 6.69e-39

Ribosomal protein S19e;


Pssm-ID: 460058  Cd Length: 137  Bit Score: 126.40  E-value: 6.69e-39
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1335348675   5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:pfam01090   1 TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPVG 67
RPS19A COG2238
Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 4-68 1.07e-20

Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19E (S16A) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441839  Cd Length: 151  Bit Score: 80.64  E-value: 1.07e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1335348675   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRG 68
Cdd:COG2238     2 VTVYDVPADLLIERLAEYLKEVDEIEPPEWAEFVKTGVHKERPPEQEDWWYVRAASLLRKVYLDG 66
PRK09333 PRK09333
30S ribosomal protein S19e; Provisional
 4-71 4.67e-20

30S ribosomal protein S19e; Provisional


Pssm-ID: 236470  Cd Length: 150  Bit Score: 78.74  E-value: 4.67e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1335348675   4 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:PRK09333    2 VTVYDVPADLLIERLAEYLKNVDEIKPPEWAAFVKTGVHKERPPEQEDWWYVRAASILRKVYIDGPVG 69
PTZ00095 PTZ00095
40S ribosomal protein S19; Provisional
 3-71 5.04e-20

40S ribosomal protein S19; Provisional


Pssm-ID: 140127  Cd Length: 169  Bit Score: 79.44  E-value: 5.04e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1335348675   3 GVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG 71
Cdd:PTZ00095   25 NATLKDVSPWRFIKAFAQHFKLEGKIFVPKCTEIVKTSHGRELAPQNPDWYYIRCAAVLRALYLRPDVG 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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