|
Name |
Accession |
Description |
Interval |
E-value |
| Cobl |
pfam09469 |
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among ... |
156-234 |
8.01e-41 |
|
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node. This domain has a ubiquitin-like fold. :
Pssm-ID: 312839 Cd Length: 79 Bit Score: 144.60 E-value: 8.01e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1386876225 156 EKTVRVVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRES 234
Cdd:pfam09469 1 EKTVRLVVNFLGTQKTVVRVSPEVPLQNLLPAICEKCEFDPEHVLLLKDYISQEELDLTKSLNDLGIKELYAWDVNRES 79
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
873-1144 |
7.20e-08 |
|
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 7.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 873 PPKAPRVTTDTGTIPFAPNLEDInnilESKFRSRASNPQAKPSSfflqMQKRASGHYVTSAAAKSVHTAPGPAPKEPtik 952
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPS----EPAVTSRARRPDAPPQS----ARPRAPVDDRGDPRGPAPPSPLPPDTHAP--- 2624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 953 evqRDPQLSPEQHPSSLSErTHSAPLPNISKADDD-------------IIQKPAETSPPPVAPKPMTLraetsPPPVfpK 1019
Cdd:PHA03247 2625 ---DPPPPSPSPAANEPDP-HPPPTVPPPERPRDDpapgrvsrprrarRLGRAAQASSPPQRPRRRAA-----RPTV--G 2693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1020 PMTLPAETSPPPVFPKPMTLPAETSLPLvfpKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPS 1099
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPL---PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1386876225 1100 PFALAVVKRSQSFSKACPESASEGSSALPPAATQDEKTHTVNKPT 1144
Cdd:PHA03247 2771 PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
|
|
| WH2 super family |
cl41728 |
Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins; This ... |
1190-1215 |
7.26e-08 |
|
Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins; This family contains the Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2) as well as thymosin-beta (Tbeta; also called beta-thymosin or betaT) domains that are small, widespread intrinsically disordered actin-binding peptides displaying significant sequence variability and different regulations of actin self-assembly in motile and morphogenetic processes. These WH2/betaT peptides are identified by a central consensus actin-binding motif LKKT/V flanked by variable N-terminal and C-terminal extensions; the betaT shares a more extended and conserved C-terminal half than WH2. These single or repeated domains are found in actin-binding proteins (ABPs) such as the hematopoietic-specific protein WASP, its ubiquitously expressed ortholog neural-WASP (N-WASP), WASP-interacting protein (WAS/WASL-interacting protein family members 1 and 2), and WASP-family verprolin homologous protein (WAVE/SCAR) isoforms: WAVE1, WAVE2, and WAVE3. Also included are the WH2 domains found in inverted formin FH2 domain-containing protein (INF2), Cordon bleu (Cobl) protein, vasodilator-stimulated phosphoprotein (VASP) homology protein and actobindin (found in amoebae). These ABPs are commonly multidomain proteins that contain signaling domains and structurally conserved actin-binding motifs, the most important being the WH2 domain motif through which they bind actin in order to direct the location, rate, and timing for actin assembly in the cell into different structures, such as filopodia, lamellipodia, stress fibers, and focal adhesions. The WH2 domain motif is one of the most abundant actin-binding motifs in Wiskott-Aldrich syndrome proteins (WASPs) where they activate Arp2/3-dependent actin nucleation and branching in response to signals mediated by Rho-family GTPases. The thymosin beta (Tbeta) domains in metazoans act in cells as major actin-sequestering peptides; their complex with monomeric ATP-actin (G-ATP-actin) cannot polymerize at either filament (F-actin) end. The actual alignment was detected with superfamily member cd21801:
Pssm-ID: 425359 Cd Length: 26 Bit Score: 49.23 E-value: 7.26e-08
10 20
....*....|....*....|....*.
gi 1386876225 1190 DPEHVRQSLLTAIRSGEAAAKLKRVT 1215
Cdd:cd21801 1 NPEQARQALLEAIRSGEGAARLKKVP 26
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Cobl |
pfam09469 |
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among ... |
156-234 |
8.01e-41 |
|
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node. This domain has a ubiquitin-like fold.
Pssm-ID: 312839 Cd Length: 79 Bit Score: 144.60 E-value: 8.01e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1386876225 156 EKTVRVVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRES 234
Cdd:pfam09469 1 EKTVRLVVNFLGTQKTVVRVSPEVPLQNLLPAICEKCEFDPEHVLLLKDYISQEELDLTKSLNDLGIKELYAWDVNRES 79
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
873-1144 |
7.20e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 7.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 873 PPKAPRVTTDTGTIPFAPNLEDInnilESKFRSRASNPQAKPSSfflqMQKRASGHYVTSAAAKSVHTAPGPAPKEPtik 952
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPS----EPAVTSRARRPDAPPQS----ARPRAPVDDRGDPRGPAPPSPLPPDTHAP--- 2624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 953 evqRDPQLSPEQHPSSLSErTHSAPLPNISKADDD-------------IIQKPAETSPPPVAPKPMTLraetsPPPVfpK 1019
Cdd:PHA03247 2625 ---DPPPPSPSPAANEPDP-HPPPTVPPPERPRDDpapgrvsrprrarRLGRAAQASSPPQRPRRRAA-----RPTV--G 2693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1020 PMTLPAETSPPPVFPKPMTLPAETSLPLvfpKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPS 1099
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPL---PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1386876225 1100 PFALAVVKRSQSFSKACPESASEGSSALPPAATQDEKTHTVNKPT 1144
Cdd:PHA03247 2771 PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
|
|
| WH2_Wc_Cobl |
cd21801 |
third Wiskott Aldrich syndrome homology region 2 (WH2 motif) repeat (called Wc) found in ... |
1190-1215 |
7.26e-08 |
|
third Wiskott Aldrich syndrome homology region 2 (WH2 motif) repeat (called Wc) found in protein Cordon-Bleu (Cobl) and similar proteins; This family contains the third tandem Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2), called Wc, found in protein Cordon-Bleu (Cobl), a potent actin filament nucleator that plays an important role in the reorganization of the actin cytoskeleton. It regulates neuron morphogenesis and increases branching of axons and dendrites. It also modulates dendrite branching in Purkinje cells. Cobl binds to and sequesters actin monomers (G-actin). Cobl contains three tandem WH2 (or W) domains consisting of an N-terminal alpha helix and a C-terminal LRKV motif. The first two WH2 domains have the highest binding affinity for actin. They are functionally active in actin nucleation and polymerization. The model corresponds to the first WH2 domain.
Pssm-ID: 409199 Cd Length: 26 Bit Score: 49.23 E-value: 7.26e-08
10 20
....*....|....*....|....*.
gi 1386876225 1190 DPEHVRQSLLTAIRSGEAAAKLKRVT 1215
Cdd:cd21801 1 NPEQARQALLEAIRSGEGAARLKKVP 26
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Cobl |
pfam09469 |
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among ... |
156-234 |
8.01e-41 |
|
Cordon-bleu ubiquitin-like domain; The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node. This domain has a ubiquitin-like fold.
Pssm-ID: 312839 Cd Length: 79 Bit Score: 144.60 E-value: 8.01e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1386876225 156 EKTVRVVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRES 234
Cdd:pfam09469 1 EKTVRLVVNFLGTQKTVVRVSPEVPLQNLLPAICEKCEFDPEHVLLLKDYISQEELDLTKSLNDLGIKELYAWDVNRES 79
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
873-1144 |
7.20e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 7.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 873 PPKAPRVTTDTGTIPFAPNLEDInnilESKFRSRASNPQAKPSSfflqMQKRASGHYVTSAAAKSVHTAPGPAPKEPtik 952
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPS----EPAVTSRARRPDAPPQS----ARPRAPVDDRGDPRGPAPPSPLPPDTHAP--- 2624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 953 evqRDPQLSPEQHPSSLSErTHSAPLPNISKADDD-------------IIQKPAETSPPPVAPKPMTLraetsPPPVfpK 1019
Cdd:PHA03247 2625 ---DPPPPSPSPAANEPDP-HPPPTVPPPERPRDDpapgrvsrprrarRLGRAAQASSPPQRPRRRAA-----RPTV--G 2693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1020 PMTLPAETSPPPVFPKPMTLPAETSLPLvfpKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPS 1099
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPL---PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1386876225 1100 PFALAVVKRSQSFSKACPESASEGSSALPPAATQDEKTHTVNKPT 1144
Cdd:PHA03247 2771 PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
|
|
| WH2_Wc_Cobl |
cd21801 |
third Wiskott Aldrich syndrome homology region 2 (WH2 motif) repeat (called Wc) found in ... |
1190-1215 |
7.26e-08 |
|
third Wiskott Aldrich syndrome homology region 2 (WH2 motif) repeat (called Wc) found in protein Cordon-Bleu (Cobl) and similar proteins; This family contains the third tandem Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2), called Wc, found in protein Cordon-Bleu (Cobl), a potent actin filament nucleator that plays an important role in the reorganization of the actin cytoskeleton. It regulates neuron morphogenesis and increases branching of axons and dendrites. It also modulates dendrite branching in Purkinje cells. Cobl binds to and sequesters actin monomers (G-actin). Cobl contains three tandem WH2 (or W) domains consisting of an N-terminal alpha helix and a C-terminal LRKV motif. The first two WH2 domains have the highest binding affinity for actin. They are functionally active in actin nucleation and polymerization. The model corresponds to the first WH2 domain.
Pssm-ID: 409199 Cd Length: 26 Bit Score: 49.23 E-value: 7.26e-08
10 20
....*....|....*....|....*.
gi 1386876225 1190 DPEHVRQSLLTAIRSGEAAAKLKRVT 1215
Cdd:cd21801 1 NPEQARQALLEAIRSGEGAARLKKVP 26
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
834-1180 |
9.09e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 9.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 834 PATSKSSQQPQPdlKPKPSSGTERHLHRTLSSPTgtETNPPKAPRVTTDTGTIPFAPnledinnileSKFRSRASNPQAK 913
Cdd:PHA03247 2562 AAPDRSVPPPRP--APRPSEPAVTSRARRPDAPP--QSARPRAPVDDRGDPRGPAPP----------SPLPPDTHAPDPP 2627
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 914 PSSfflqMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLSPEQHPSSLSERTHSAPLPNISKADDDIIQKPA 993
Cdd:PHA03247 2628 PPS----PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP 2703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 994 ETSPPPVAPKPMTlraetSPPPVFPKPMTLPAETSPPPVFPKPMTLPAETSLPLVFPKPMTLRAETSPP-------PVAA 1066
Cdd:PHA03247 2704 PPPTPEPAPHALV-----SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPapappaaPAAG 2778
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1067 KPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSK--ACPESASEGSSALPPAATQDekthtvNKPT 1144
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplPPPTSAQPTAPPPPPGPPPP------SLPL 2852
|
330 340 350
....*....|....*....|....*....|....*.
gi 1386876225 1145 VGSQHGDGDKQNNPVQNEHSSQVLTPADGPSFTLKR 1180
Cdd:PHA03247 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
903-1134 |
3.57e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.42 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 903 FRSRASNPQAKPSSfflqmqkRASGHYVTSAAAKSVHTAPGPAPKEPTiKEVQRDPQLSPEQHPSSLSERTHSAPLPNIS 982
Cdd:PRK12323 363 FRPGQSGGGAGPAT-------AAAAPVAQPAPAAAAPAAAAPAPAAPP-AAPAAAPAAAAAARAVAAAPARRSPAPEALA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 983 KADDDIIQKPAETSPPPVAPKPMTLrAETSPPPVFPKPMTLPAETSPPPVFPKPMTLPAETS------LPLVFPKPMTLR 1056
Cdd:PRK12323 435 AARQASARGPGGAPAPAPAPAAAPA-AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDpppweeLPPEFASPAPAQ 513
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1386876225 1057 AETSPPPVAAKPVALPGSQGTSlnlktlktfgAPRPYSSSGPSPfALAVVKRSQSFSKACPESASEGSSALPPAATQD 1134
Cdd:PRK12323 514 PDAAPAGWVAESIPDPATADPD----------DAFETLAPAPAA-APAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
811-1096 |
6.19e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 47.37 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 811 KMLPVGQRHTIENMTETSMQTEVPATSKSSQQPQPDLKPKPSsgterhlhrTLSSPTGTETNPPK--APR-VTTDTGTIP 887
Cdd:PHA03378 562 QLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPS---------QTPEPPTTQSHIPEtsAPRqWPMPLRPIP 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 888 FAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKepTIKEVQRDP-QLSPEQHP 966
Cdd:PHA03378 633 MRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPG--TMQPPPRAPtPMRPPAAP 710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 967 SSLSERTHSAPLPNISKADDDIIQKPAETSPPPvAPKPMTLRAETSPPPVFPKPMTLPAETSPPPV-FPKPMTLPAETSL 1045
Cdd:PHA03378 711 PGRAQRPAAATGRARPPAAAPGRARPPAAAPGR-ARPPAAAPGRARPPAAAPGRARPPAAAPGAPTpQPPPQAPPAPQQR 789
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1386876225 1046 PLVFPKPMTlRAETSPPPVAAKPVALPGSQG-TSLNLKTLKTFGAPRPYSSS 1096
Cdd:PHA03378 790 PRGAPTPQP-PPQAGPTSMQLMPRAAPGQQGpTKQILRQLLTGGVKRGRPSL 840
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
834-1129 |
6.22e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 834 PATSKSSQQPQPDLKPKPSSGTERHLHRTLSSPTGTETNPPKAPRVTTDTGTIpfapnledinnilESKFRSRASNPQAK 913
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV-------------SRPRRARRLGRAAQ 2675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 914 PSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQlspeqhPSSLSERTHSAPLPNISKADDDIIQKPA 993
Cdd:PHA03247 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPL------PPGPAAARQASPALPAAPAPPAVPAGPA 2749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 994 ETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPPVFP------------KPMTLPAETSLPLVFPKPMTLRAETSP 1061
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASlsesreslpspwDPADPPAAVLAPAAALPPAASPAGPLP 2829
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1386876225 1062 PPVAAKPVALPGSQGTSLNLKTLKTFGAP------RPYSSSGPSPFALAVVKRSQSFSKACPESASEgSSALPP 1129
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE-SFALPP 2902
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
724-1100 |
7.68e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 7.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 724 EKEPACTYGNNVPLSPVDGSNKNPAASylKNFPLYRQDSNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEMAKDWESeA 803
Cdd:PHA03247 2586 ARRPDAPPQSARPRAPVDDRGDPRGPA--PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV-S 2662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 804 MGRKDDQKMLPVGQRHTIENMTETSMQTEVPATSKSSQQPQPDLKPKPSSgteRHLHRTLSSPTGTETNPPKAPRVTTDT 883
Cdd:PHA03247 2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP---HALVSATPLPPGPAAARQASPALPAAP 2739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 884 GT--IPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLS 961
Cdd:PHA03247 2740 APpaVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 962 PEQHPSSLSerthsAPLPNISKADDDIIQKPAETSPPP---VAPK-PMTLRAETSPPPvfpkpmTLPAETSPPPVfpKPM 1037
Cdd:PHA03247 2820 PAASPAGPL-----PPPTSAQPTAPPPPPGPPPPSLPLggsVAPGgDVRRRPPSRSPA------AKPAAPARPPV--RRL 2886
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1386876225 1038 TLPAETSLPLVFPKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPSP 1100
Cdd:PHA03247 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
826-1100 |
2.06e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.85 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 826 ETSMQT-EVPATSKSSQQPQPDLKPKPssgterhlhrtlssptGTETNPPK-APRVTTDTGTIPFAPNLEDINNILESKF 903
Cdd:PRK10263 338 EPVTQTpPVASVDVPPAQPTVAWQPVP----------------GPQTGEPViAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 904 rsrasnPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEV-QRDPQLSPEQH-PSSLSERTHSAPLPni 981
Cdd:PRK10263 402 ------QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAwQAEEQQSTFAPqSTYQTEQTYQQPAA-- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 982 skADDDIIQKPAETSPPPVAPKPMTLRAETSPPPVF-----------------------PKPMTLPAETSPPPVFPKPMT 1038
Cdd:PRK10263 474 --QEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYyfeeveekrarereqlaawyqpiPEPVKEPEPIKSSLKAPSVAA 551
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1386876225 1039 LPAETSLPLVFPKPMTLRAETSPPPVAAKpVALPgsqgtslnLKTLKTFGAPRPYSSSGPSP 1100
Cdd:PRK10263 552 VPPVEAAAAVSPLASGVKKATLATGAAAT-VAAP--------VFSLANSGGPRPQVKEGIGP 604
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
958-1077 |
2.47e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 45.15 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 958 PQLSPEQHPSSLSERTHSAPLPNiSKADDDIIQKPAETSPPPVAPKPMTlRAETSPPPVfPKPMTLPAETSPPPVFPKPM 1037
Cdd:PRK14971 371 GGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQPSAPQSAT-QPAGTPPTV-SVDPPAAVPVNPPSTAPQAV 447
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1386876225 1038 TLPAETSlplvfPKPMTLRAETSPPPVAAKPVALPGSQGT 1077
Cdd:PRK14971 448 RPAQFKE-----EKKIPVSKVSSLGPSTLRPIQEKAEQAT 482
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
991-1080 |
1.13e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.26 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 991 KPAETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPPVFPKPmtlPAETSLPLVFPKPMTLRAETSPPPVAAK--P 1068
Cdd:PRK14950 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR---PVAPPVPHTPESAPKLTRAAIPVDEKPKytP 446
|
90
....*....|..
gi 1386876225 1069 VALPGSQGTSLN 1080
Cdd:PRK14950 447 PAPPKEEEKALI 458
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
861-1062 |
1.35e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.94 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 861 RTLSSPTGTETNPPKAPRVTTDTGTIPFAPNLEDiNNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHT 940
Cdd:PRK12323 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 941 APGPAPKEPTIKEVQRDPQLSPEQHPSSLSERTHSAPLPNISKADDDIIQKPAETSPPPVAPKPMTLRAETSPPPVFPKP 1020
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1386876225 1021 mTLPAETSPPPVFPKPMTLPAETSLPLVFPKPMTLRAETSPP 1062
Cdd:PRK12323 535 -DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
930-1241 |
2.11e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 930 VTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLSPEQHPSSL---SERTHSAPLPNISKADDDI--IQKPAETSPPPVAPKP 1004
Cdd:PHA03307 56 VAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLapaSPAREGSPTPPGPSSPDPPppTPPPASPPPSPAPDLS 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1005 MTLRAETSPPPVfPKPMTLPAETSPPPVfpkpmTLPAETSLPLVFPKPMTLRAETSPPPVAAKPVALPGSqgtslnlktl 1084
Cdd:PHA03307 136 EMLRPVGSPGPP-PAASPPAAGASPAAV-----ASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP---------- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1085 ktfGAPRPYSSSGPSPFALAVVkrsqsfskaCPESASEGSSALPPAATQDEKTHtvnkpTVGSQHGDGDKQNNPVQNEHS 1164
Cdd:PHA03307 200 ---AAASPRPPRRSSPISASAS---------SPAPAPGRSAADDAGASSSDSSS-----SESSGCGWGPENECPLPRPAP 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1386876225 1165 SQVLTPADGPSFTLKRqssltfqSSDPEHVRQSLLTAIRSGEAAAKLKRVTVPSNTISVNGKSGLSQSMSIDAQDSR 1241
Cdd:PHA03307 263 ITLPTRIWEASGWNGP-------SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
943-1104 |
2.51e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 943 GPAPKEPtikevqrdPQLSPEQHPSSLSERTH--SAPLPNISKADDDIIQKPAETSPPPVAPKPMtlRAETSPPPVFPKP 1020
Cdd:PHA03378 648 FPTPHQP--------PQVEITPYKPTWTQIGHipYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM--RPPAAPPGRAQRP 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 1021 MTLPAETSPPPVFPKPMTLPAETSLPLVFPKPMTLRAET-------SPPPVAA--KPVALPGSQGTSLNLKTLKTFGAPR 1091
Cdd:PHA03378 718 AAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPpaaapgrARPPAAApgAPTPQPPPQAPPAPQQRPRGAPTPQ 797
|
170
....*....|...
gi 1386876225 1092 PYSSSGPSPFALA 1104
Cdd:PHA03378 798 PPPQAGPTSMQLM 810
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
990-1085 |
3.03e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.80 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 990 QKPAETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPPVFPKPMTLPAETSLPlvfpkpmtlrAETSPPPVAAKPV 1069
Cdd:PRK12270 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA----------AAAPAAPPAAAAA 105
|
90
....*....|....*.
gi 1386876225 1070 ALPGSQGTSLNLKTLK 1085
Cdd:PRK12270 106 AAPAAAAVEDEVTPLR 121
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
834-1094 |
3.72e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 834 PATSKSSQQPQPDLKPKPSSGTERHLHRTlSSPTGTETNPPKAPRVTTDTGTIPFAPNLEDINNILESKFRSRASNPQAK 913
Cdd:PHA03247 2793 ESRESLPSPWDPADPPAAVLAPAAALPPA-ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 914 PSSfflqmqkrasghyVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLSPEQHPSSLSERTHSAPLPniskadddiiQKPA 993
Cdd:PHA03247 2872 AAK-------------PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP----------PPPQ 2928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 994 ETSPPPVAPKPmtlraetsPPPVFPKPMTLPAeTSPPPVFPKP---MTLPAETSLPLVF---PKPMTLRAETSPPPVAAK 1067
Cdd:PHA03247 2929 PQPPPPPPPRP--------QPPLAPTTDPAGA-GEPSGAVPQPwlgALVPGRVAVPRFRvpqPAPSREAPASSTPPLTGH 2999
|
250 260
....*....|....*....|....*..
gi 1386876225 1068 PVALPGSQGTSLnlkTLKTFGAPRPYS 1094
Cdd:PHA03247 3000 SLSRVSSWASSL---ALHEETDPPPVS 3023
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
991-1137 |
7.54e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386876225 991 KPAETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPPVFPKPM------TLPAETSLPLVFPKPMTLRAETSPPPV 1064
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApqqapaVPLPETTSQLLAARQQLQRAQGATKAK 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1386876225 1065 AAKPVALPGSQGTSLNLKTLKTFgAPRPYSSSGPSPFALAVVKRSQSfskacPESASEGSSALPPAATQ---DEKT 1137
Cdd:PRK07994 440 KSEPAAASRARPVNSALERLASV-RPAPSALEKAPAKKEAYRWKATN-----PVEVKKEPVATPKALKKaleHEKT 509
|
|
|