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Conserved domains on  [gi|1409931505|ref|NP_001351620|]
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NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUFA12 super family cl47913
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 37-85 4.01e-18

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


The actual alignment was detected with superfamily member pfam05071:

Pssm-ID: 461542  Cd Length: 96  Bit Score: 71.48  E-value: 4.01e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1409931505 37 TLVGEDKYGNKYYEDNK-QFFGRHRWVIYTTemngkntfWDVDGSMVPPE 85
Cdd:pfam05071  1 TLVGEDEFGNKYYENKDeELPGRRRWVIYND--------GDYDASQVPPE 42
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 37-85 4.01e-18

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 71.48  E-value: 4.01e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1409931505 37 TLVGEDKYGNKYYEDNK-QFFGRHRWVIYTTemngkntfWDVDGSMVPPE 85
Cdd:pfam05071  1 TLVGEDEFGNKYYENKDeELPGRRRWVIYND--------GDYDASQVPPE 42
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 34-85 5.39e-11

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 54.12  E-value: 5.39e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1409931505  34 RIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYttemngKNTFwDVDGSMVPPE 85
Cdd:PLN03095    8 RAGRLVGEDEFGNKYYENPSYQSGRHRWVEY------ADKD-DYNASNIPPE 52
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 37-85 4.01e-18

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 71.48  E-value: 4.01e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1409931505 37 TLVGEDKYGNKYYEDNK-QFFGRHRWVIYTTemngkntfWDVDGSMVPPE 85
Cdd:pfam05071  1 TLVGEDEFGNKYYENKDeELPGRRRWVIYND--------GDYDASQVPPE 42
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 34-85 5.39e-11

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 54.12  E-value: 5.39e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1409931505  34 RIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYttemngKNTFwDVDGSMVPPE 85
Cdd:PLN03095    8 RAGRLVGEDEFGNKYYENPSYQSGRHRWVEY------ADKD-DYNASNIPPE 52
PRK08183 PRK08183
NADH:ubiquinone oxidoreductase subunit NDUFA12;
34-85 4.29e-10

NADH:ubiquinone oxidoreductase subunit NDUFA12;


Pssm-ID: 236176 [Multi-domain]  Cd Length: 133  Bit Score: 51.91  E-value: 4.29e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1409931505  34 RIGTLVGEDKYGNKYY--EDNKQFFGR-HRWVIYttemNGKNtfwdvDGSMVPPE 85
Cdd:PRK08183   24 RKGERVGEDEFGNVYYrtKGGKPSDGReRRWVIY----NGYA-----EASRIPPE 69
PLN02732 PLN02732
Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
 37-85 2.07e-07

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit


Pssm-ID: 215389  Cd Length: 159  Bit Score: 45.69  E-value: 2.07e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1409931505  37 TLVGEDKYGNKYYED-NKQFFGRHRWVIYTTemngKNTFwdvDGSMVPPE 85
Cdd:PLN02732   50 TLVGVDKFGNKYYQKlGDTQYGRHRWVEYAE----KSRY---NASQVPAE 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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