NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1737620031|ref|NP_001361082|]
View 

spermatogenesis associated 6-like protein isoform 3 [Mus musculus]

Protein Classification

spermatogenesis-associated protein 6( domain architecture ID 10632997)

spermatogenesis-associated protein 6 (SPATA6) is involved in myosin-based microfilament transport through interaction with myosin subunits

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-131 6.86e-63

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


:

Pssm-ID: 464365  Cd Length: 139  Bit Score: 197.83  E-value: 6.86e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620031   7 VELQIRAISCPGVFLPDKEAVYLGVYLLNQYLETDCFPPVFPVVIQQSMRFVKVFEEAIDPGAVAELLET---------- 76
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDetivieliql 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737620031  77 ----WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIAPKIEFSTRTAI 131
Cdd:pfam14909  81 vppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-131 6.86e-63

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 197.83  E-value: 6.86e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620031   7 VELQIRAISCPGVFLPDKEAVYLGVYLLNQYLETDCFPPVFPVVIQQSMRFVKVFEEAIDPGAVAELLET---------- 76
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDetivieliql 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737620031  77 ----WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIAPKIEFSTRTAI 131
Cdd:pfam14909  81 vppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-131 6.86e-63

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 197.83  E-value: 6.86e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620031   7 VELQIRAISCPGVFLPDKEAVYLGVYLLNQYLETDCFPPVFPVVIQQSMRFVKVFEEAIDPGAVAELLET---------- 76
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDetivieliql 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737620031  77 ----WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIAPKIEFSTRTAI 131
Cdd:pfam14909  81 vppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH