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Conserved domains on  [gi|1821619610|ref|NP_001365865|]
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kinesin-like protein KIF2A isoform 4 [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
176-504 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 335
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 413
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 414 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 493
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619610 494 LNTLRYANRVK 504
Cdd:cd01367   318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
176-504 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 335
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 413
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 414 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 493
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619610 494 LNTLRYANRVK 504
Cdd:cd01367   318 LNTLRYADRVK 328
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
176-511 1.21e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.79  E-value: 1.21e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  176 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 252
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  253 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 332
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  333 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 404
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  405 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 482
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....*....
gi 1821619610  483 ISPGMASCENTLNTLRYANRVKELTVNPA 511
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPI 333
Kinesin pfam00225
Kinesin motor domain;
182-505 8.73e-132

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 8.73e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 182 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 261
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 262 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 337
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 338 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 409
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 410 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 488
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 1821619610 489 SCENTLNTLRYANRVKE 505
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
179-506 3.48e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.91  E-value: 3.48e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 179 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:COG5059     9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 334
Cdd:COG5059    87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 335 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 409
Cdd:COG5059   160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 410 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 486
Cdd:COG5059   240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                         330       340
                  ....*....|....*....|
gi 1821619610 487 MASCENTLNTLRYANRVKEL 506
Cdd:COG5059   317 SNSFEETINTLKFASRAKSI 336
PLN03188 PLN03188
kinesin-12 family protein; Provisional
179-517 3.82e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.40  E-value: 3.82e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  179 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 258
Cdd:PLN03188   102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  259 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 329
Cdd:PLN03188   166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  330 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 401
Cdd:PLN03188   245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKsvadgls 324
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  402 --LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 474
Cdd:PLN03188   325 sfKTSRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*..
gi 1821619610  475 SRTCMIATISPGMASCENTLNTLRYANRVKEL----TVNPAAAGDVH 517
Cdd:PLN03188   403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIknkaVVNEVMQDDVN 449
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
176-504 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 595.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 335
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 413
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 414 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 493
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619610 494 LNTLRYANRVK 504
Cdd:cd01367   318 LNTLRYADRVK 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
176-504 3.36e-138

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 407.03  E-value: 3.36e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKEtQMKDLDVITIPSKDVVMVHEPKQkvdltRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKN-----RVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN--R 333
Cdd:cd00106    75 EGYNGTIFAYGQTGSGKTYTMLGPD-----PEQRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 334 KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL-------HGKF 406
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 407 SLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISP 485
Cdd:cd00106   230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                         330
                  ....*....|....*....
gi 1821619610 486 GMASCENTLNTLRYANRVK 504
Cdd:cd00106   308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
176-511 1.21e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.79  E-value: 1.21e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  176 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 252
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  253 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 332
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  333 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 404
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  405 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 482
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....*....
gi 1821619610  483 ISPGMASCENTLNTLRYANRVKELTVNPA 511
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPI 333
Kinesin pfam00225
Kinesin motor domain;
182-505 8.73e-132

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 8.73e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 182 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 261
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 262 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 337
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 338 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 409
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 410 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 488
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 1821619610 489 SCENTLNTLRYANRVKE 505
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
176-506 2.84e-89

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 281.54  E-value: 2.84e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVmVHEPKQKVDLTRYLEN------------QTFRFDYAFDDSAPNEMVY 243
Cdd:cd01370     1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHML-VFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 244 RFTARPLVETIFERGMATCFAYGQTGSGKTHTMggdfSGKNQDcsKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIY 323
Cdd:cd01370    80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTM----LGTPQE--PGLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 324 SGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL 402
Cdd:cd01370   153 NETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKT 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 403 H--------GKFSLIDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRAL---GRNKPHTPFRASKLTQVLRDSf 470
Cdd:cd01370   233 AsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALadpGKKNKHIPYRDSKLTRLLKDS- 309
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1821619610 471 IGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 506
Cdd:cd01370   310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
179-502 1.87e-82

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 263.81  E-value: 1.87e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 179 VCVRKRPLNKKEtqmkdldvITIPSKDVVMVHEPKQKVDLTRyleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 258
Cdd:cd01372     5 VAVRVRPLLPKE--------IIEGCRICVSFVPGEPQVTVGT---DKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 259 MATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVF-LMLKKPNYKKLELQVYatFFEIYSGKVFDLLNRKTK- 336
Cdd:cd01372    74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkKIEKKKDTFEFQLKVS--FLEIYNEEIRDLLDPETDk 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 337 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------------ 401
Cdd:cd01372   152 kptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsaddk 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 402 ---LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALG---RNKPHTPFRASKLTQVLRDSfIGENS 475
Cdd:cd01372   232 nstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGNS 309
                         330       340
                  ....*....|....*....|....*..
gi 1821619610 476 RTCMIATISPGMASCENTLNTLRYANR 502
Cdd:cd01372   310 HTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
177-506 1.49e-80

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 258.03  E-value: 1.49e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 177 ICVCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKqkvdltryleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 256
Cdd:cd01374     2 ITVTVRVRPLNSREIGINE-QVAWEIDNDTIYLVEPP----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 257 RGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLN-RKT 335
Cdd:cd01374    71 GYNGTIFAYGQTSSGKTFTMSGDED------EPGIIPLAIRDIFSKIQDTPDREFLLRV--SYLEIYNEKINDLLSpTSQ 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH--------GKFS 407
Cdd:cd01374   143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvrvSTLN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 408 LIDLAGNERGADT-SSADRqtRLEGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSFIGeNSRTCMIATIS 484
Cdd:cd01374   223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLSEGKVggHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                         330       340
                  ....*....|....*....|..
gi 1821619610 485 PGMASCENTLNTLRYANRVKEL 506
Cdd:cd01374   300 PAESHVEETLNTLKFASRAKKI 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
176-504 2.88e-77

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 250.73  E-value: 2.88e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQ-KVDLTRYLENQTFRFDYAFD--DS-----APNEMVYRFTA 247
Cdd:cd01365     2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYWshDSedpnyASQEQVYEDLG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 248 RPLVETIFErGMATC-FAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGK 326
Cdd:cd01365    82 EELLQHAFE-GYNVClFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEK 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 327 VFDLLNRKTK-----LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK-- 399
Cdd:cd01365   155 VRDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrh 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 400 -------GKLHGKFSLIDLAGNERgADTSSADrQTRL-EGAEINKSLLALKECIRAL--------GRNKPHTPFRASKLT 463
Cdd:cd01365   235 daetnltTEKVSKISLVDLAGSER-ASSTGAT-GDRLkEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDSVLT 312
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1821619610 464 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 504
Cdd:cd01365   313 WLLKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
177-504 5.92e-74

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 240.69  E-value: 5.92e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 177 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 256
Cdd:cd01369     4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATSE---------TGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 257 RGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLLN-RKT 335
Cdd:cd01369    75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIYS-MDENLEFHVKVSYFEIYMEKIRDLLDvSKT 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGKFSLID 410
Cdd:cd01369   151 NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENvetekKKSGKLYLVD 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 411 LAGNERgADTSSADRQTRLEGAEINKSLLALKECIRALG-RNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGMAS 489
Cdd:cd01369   231 LAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYN 308
                         330
                  ....*....|....*
gi 1821619610 490 CENTLNTLRYANRVK 504
Cdd:cd01369   309 ESETLSTLRFGQRAK 323
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
179-504 5.25e-73

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 238.90  E-value: 5.25e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 179 VCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFER 257
Cdd:cd01371     5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKA----TANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 258 GMATCFAYGQTGSGKTHTMGGDfsgKNQDCSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL--NRKT 335
Cdd:cd01371    81 YNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLLgkDQTK 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR-----KGKLH---GKFS 407
Cdd:cd01371   157 RLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvGKLN 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 408 LIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSfIGENSRTCMIATISPG 486
Cdd:cd01371   237 LVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKsTHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGPA 314
                         330
                  ....*....|....*...
gi 1821619610 487 MASCENTLNTLRYANRVK 504
Cdd:cd01371   315 DYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
177-504 5.04e-70

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 230.56  E-value: 5.04e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 177 ICVCVRKRPLNKKEtQMKDLDVITIPSkdvvmvhEPKQKVDLTR-YLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIF 255
Cdd:cd01366     4 IRVFCRVRPLLPSE-ENEDTSHITFPD-------EDGQTIELTSiGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ErGMATC-FAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-- 332
Cdd:cd01366    75 D-GYNVCiFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLApg 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 333 --RKTKLRVLEDG-KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR-----RKGKLHG 404
Cdd:cd01366   148 naPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrnlqTGEISVG 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 405 KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGeNSRTCMIATIS 484
Cdd:cd01366   228 KLNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNIS 305
                         330       340
                  ....*....|....*....|
gi 1821619610 485 PGMASCENTLNTLRYANRVK 504
Cdd:cd01366   306 PAESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
174-510 1.82e-68

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 227.21  E-value: 1.82e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 174 EHRICVCVRKRPLNKKETQMKDLDVITI--PSKDVVMVHEPKQKVDLTRylenqTFRFDYAFDDSAPNEMVYRFTARPLV 251
Cdd:cd01364     1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 252 ETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN-----QDCSKGIYALAARDVFlmlkkpnyKKLELQ-----VYATFFE 321
Cdd:cd01364    76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSPNEeytweLDPLAGIIPRTLHQLF--------EKLEDNgteysVKVSYLE 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 322 IYSGKVFDLL----NRKTKLRVLED--GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQII 395
Cdd:cd01364   148 IYNEELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSIT 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 396 LRRK------------GKLHgkfsLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 463
Cdd:cd01364   228 IHIKettidgeelvkiGKLN----LVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERAPHVPYRESKLT 302
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1821619610 464 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVNP 510
Cdd:cd01364   303 RLLQDS-LGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKP 348
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
179-506 3.48e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 216.91  E-value: 3.48e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 179 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:COG5059     9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 334
Cdd:COG5059    87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 335 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 409
Cdd:COG5059   160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 410 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 486
Cdd:COG5059   240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                         330       340
                  ....*....|....*....|
gi 1821619610 487 MASCENTLNTLRYANRVKEL 506
Cdd:COG5059   317 SNSFEETINTLKFASRAKSI 336
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
181-504 9.57e-56

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 192.80  E-value: 9.57e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 181 VRKRPLNKKETQMKDLDvitiPSKDVVMVHEPKqkvDLTR-YLENQ----TFRFDYAFDDsAPNEMVYRFTARPLVETIF 255
Cdd:cd01375     6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQqedwSFKFDGVLHN-ASQELVYETVAKDVVSSAL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLNRK- 334
Cdd:cd01375    78 AGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFRMIEERPTKAYTVHV--SYLEIYNEQLYDLLSTLp 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 335 ------TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 401
Cdd:cd01375   153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 402 LHGKFSLIDLAGNERGADTSSADrQTRLEGAEINKSLLALKECIRALGR-NKPHTPFRASKLTQVLRDSfIGENSRTCMI 480
Cdd:cd01375   233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSDkDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                         330       340
                  ....*....|....*....|....
gi 1821619610 481 ATISPGMASCENTLNTLRYANRVK 504
Cdd:cd01375   311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
175-510 2.00e-53

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 186.95  E-value: 2.00e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 175 HRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKvdltrylenqTFRFDYAFDDSAPNEMVYRFTARPLVETI 254
Cdd:cd01373     1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPK----------TFTFDHVADSNTNQESVFQSVGKPIVESC 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 255 FERGMATCFAYGQTGSGKTHTMGGDfSGKNQDCSKGIYALAARdVFLML-------KKPNYKKLELQVYATFFEIYSGKV 327
Cdd:cd01373    71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPR-IFEYLfsliqreKEKAGEGKSFLCKCSFLEIYNEQI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 328 FDLLNR-KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-- 404
Cdd:cd01373   149 YDLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfv 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 405 -----KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRAL-----GRNKpHTPFRASKLTQVLRDSfIGEN 474
Cdd:cd01373   229 nirtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALvdvahGKQR-HVCYRDSKLTFLLRDS-LGGN 305
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1821619610 475 SRTCMIATISPGMASCENTLNTLRYANRVKELTVNP 510
Cdd:cd01373   306 AKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKA 341
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
179-500 3.48e-52

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 183.36  E-value: 3.48e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 179 VCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTR-----YLENQtFRFDYAFDDSAPNEMVYRFTARPLVET 253
Cdd:cd01368     5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSernggQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 254 IFERGMATCFAYGQTGSGKTHTMGGdfsgknqdcSKGIYALAARDVFLMLKK-PNYkklelQVYATFFEIYSGKVFDLLN 332
Cdd:cd01368    84 LLHGKNGLLFTYGVTNSGKTYTMQG---------SPGDGGILPRSLDVIFNSiGGY-----SVFVSYIEIYNEYIYDLLE 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 333 --------RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQI-ILRRKGKLH 403
Cdd:cd01368   150 pspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 404 G------------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRN-----KPHTPFRASKLTQVL 466
Cdd:cd01368   230 GdvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLF 308
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1821619610 467 RDSFIGEnSRTCMIATISPGMASCENTLNTLRYA 500
Cdd:cd01368   309 QNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
176-504 4.90e-51

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 179.62  E-value: 4.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 176 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPkqkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 255
Cdd:cd01376     1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 256 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKkleLQVYATFFEIYSGKVFDLLNRKT 335
Cdd:cd01376    75 EGQNATVFAYGSTGAGKTFTMLGSPE------QPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEPAS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 336 K-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL------HGKFSL 408
Cdd:cd01376   146 KeLVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 409 IDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGM 487
Cdd:cd01376   226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                         330
                  ....*....|....*..
gi 1821619610 488 ASCENTLNTLRYANRVK 504
Cdd:cd01376   303 TFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
179-517 3.82e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.40  E-value: 3.82e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  179 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 258
Cdd:PLN03188   102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  259 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 329
Cdd:PLN03188   166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  330 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 401
Cdd:PLN03188   245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKsvadgls 324
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610  402 --LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 474
Cdd:PLN03188   325 sfKTSRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*..
gi 1821619610  475 SRTCMIATISPGMASCENTLNTLRYANRVKEL----TVNPAAAGDVH 517
Cdd:PLN03188   403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIknkaVVNEVMQDDVN 449
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
217-485 1.24e-12

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 66.21  E-value: 1.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 217 DLTRYLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIFE-RGMATCFAYGQTGSGKTHTMggdfsgknqdcsKGIYALA 295
Cdd:cd01363    10 ELPIYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDgYNNQSIFAYGESGAGKTETM------------KGVIPYL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 296 ARDVFlmlkkpnykklelqvyatffeiysgkvfdllNRKTKLRVLEDgkqqvqvVGLQEREVKCVEDVLKLIDIGNSCRT 375
Cdd:cd01363    77 ASVAF-------------------------------NGINKGETEGW-------VYLTEITVTLEDQILQANPILEAFGN 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 376 SgQTSANAHSSRSHAVFQIILrrkgklhgkfsliDLAGNERgadtssadrqtrlegaeINKSLLALKECIRAlgrnkpht 455
Cdd:cd01363   119 A-KTTRNENSSRFGKFIEILL-------------DIAGFEI-----------------INESLNTLMNVLRA-------- 159
                         250       260       270
                  ....*....|....*....|....*....|
gi 1821619610 456 pfraskltqvlrdsfigenSRTCMIATISP 485
Cdd:cd01363   160 -------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
172-331 1.75e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 42.21  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 172 IDEHR--ICVCVRKRPLNKKETQmkdldvITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTaRP 249
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619610 250 LVETIFeRGMATC-FAYGQTGSGKTHTMggdfsgknqdcskgiyALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVF 328
Cdd:pfam16796  79 LVQSCL-DGYNVCiFAYGQTGSGSNDGM----------------IPRAREQIFRFISSLKKGWKYTIELQFVEIYNESSQ 141

                  ...
gi 1821619610 329 DLL 331
Cdd:pfam16796 142 DLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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