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Conserved domains on  [gi|1821619592|ref|NP_001365869|]
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kinesin-like protein KIF2A isoform 8 [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
203-531 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 596.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 362
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 440
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 441 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 520
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619592 521 LNTLRYANRVK 531
Cdd:cd01367   318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
203-531 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 596.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 362
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 440
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 441 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 520
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619592 521 LNTLRYANRVK 531
Cdd:cd01367   318 LNTLRYADRVK 328
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
203-539 8.21e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.02  E-value: 8.21e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  203 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 279
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  280 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 359
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  360 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 431
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  432 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 509
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340       350
                   ....*....|....*....|....*....|
gi 1821619592  510 ISPGMASCENTLNTLRYANRVKEFGISPSD 539
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
209-532 3.45e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 3.45e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 209 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 288
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 289 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 364
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 365 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 436
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 437 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 515
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 1821619592 516 SCENTLNTLRYANRVKE 532
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
206-532 1.41e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 218.84  E-value: 1.41e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 206 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:COG5059     9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 361
Cdd:COG5059    87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 362 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 436
Cdd:COG5059   160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 437 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 513
Cdd:COG5059   240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                         330
                  ....*....|....*....
gi 1821619592 514 MASCENTLNTLRYANRVKE 532
Cdd:COG5059   317 SNSFEETINTLKFASRAKS 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
106-531 3.56e-39

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 156.25  E-value: 3.56e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  106 PRdNRVVGSARARPSQLPEQSSSAQQNARRKSNCVKEVEK-------LQEKREKRRLQQQELREKRAQDVDATNPNYEIM 178
Cdd:PLN03188     7 PR-NAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPppdlnslTSDLKPDHRSASAKLKSPLPPRPPSSNPLKRKL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  179 CMirdfrgsldyrPLTTADPIDEHRICVCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDY 258
Cdd:PLN03188    86 SA-----------ETAPENGVSDSGVKVIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDS 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  259 AFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML------- 330
Cdd:PLN03188   139 IADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarinee 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  331 -KKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSA 408
Cdd:PLN03188   218 qIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSI 297
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  409 NAHSSRSHAVFQIIL--RRKGKLHG-------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR-- 477
Cdd:PLN03188   298 NAESSRSHSVFTCVVesRCKSVADGlssfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEis 376
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1821619592  478 --NKP-HTPFRASKLTQVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 531
Cdd:PLN03188   377 qtGKQrHIPYRDSRLTFLLQES-LGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
203-531 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 596.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 362
Cdd:cd01367    81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 440
Cdd:cd01367   158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 441 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 520
Cdd:cd01367   238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                         330
                  ....*....|.
gi 1821619592 521 LNTLRYANRVK 531
Cdd:cd01367   318 LNTLRYADRVK 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
203-531 1.23e-137

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 407.03  E-value: 1.23e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKEtQMKDLDVITIPSKDVVMVHEPKQkvdltRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKN-----RVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN--R 360
Cdd:cd00106    75 EGYNGTIFAYGQTGSGKTYTMLGPD-----PEQRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 361 KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL-------HGKF 433
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 434 SLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISP 512
Cdd:cd00106   230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                         330
                  ....*....|....*....
gi 1821619592 513 GMASCENTLNTLRYANRVK 531
Cdd:cd00106   308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
203-539 8.21e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.02  E-value: 8.21e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  203 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 279
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  280 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 359
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  360 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 431
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  432 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 509
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340       350
                   ....*....|....*....|....*....|
gi 1821619592  510 ISPGMASCENTLNTLRYANRVKEFGISPSD 539
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
209-532 3.45e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 390.40  E-value: 3.45e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 209 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 288
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 289 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 364
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 365 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 436
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 437 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 515
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 1821619592 516 SCENTLNTLRYANRVKE 532
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
203-532 2.77e-89

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 283.08  E-value: 2.77e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVmVHEPKQKVDLTRYLEN------------QTFRFDYAFDDSAPNEMVY 270
Cdd:cd01370     1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHML-VFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 271 RFTARPLVETIFERGMATCFAYGQTGSGKTHTMggdfSGKNQDcsKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIY 350
Cdd:cd01370    80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTM----LGTPQE--PGLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIY 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 351 SGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL 429
Cdd:cd01370   153 NETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKT 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 430 H--------GKFSLIDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRAL---GRNKPHTPFRASKLTQVLRDSf 497
Cdd:cd01370   233 AsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALadpGKKNKHIPYRDSKLTRLLKDS- 309
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1821619592 498 IGENSRTCMIATISPGMASCENTLNTLRYANRVKE 532
Cdd:cd01370   310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKN 344
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
206-529 3.78e-82

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 264.19  E-value: 3.78e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 206 VCVRKRPLNKKEtqmkdldvITIPSKDVVMVHEPKQKVDLTRyleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 285
Cdd:cd01372     5 VAVRVRPLLPKE--------IIEGCRICVSFVPGEPQVTVGT---DKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 286 MATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVF-LMLKKPNYKKLELQVYatFFEIYSGKVFDLLNRKTK- 363
Cdd:cd01372    74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkKIEKKKDTFEFQLKVS--FLEIYNEEIRDLLDPETDk 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 364 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------------ 428
Cdd:cd01372   152 kptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsaddk 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 429 ---LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALG---RNKPHTPFRASKLTQVLRDSfIGENS 502
Cdd:cd01372   232 nstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGNS 309
                         330       340
                  ....*....|....*....|....*..
gi 1821619592 503 RTCMIATISPGMASCENTLNTLRYANR 529
Cdd:cd01372   310 HTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
204-532 1.00e-79

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 256.88  E-value: 1.00e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 204 ICVCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKqkvdltryleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 283
Cdd:cd01374     2 ITVTVRVRPLNSREIGINE-QVAWEIDNDTIYLVEPP----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 284 RGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLN-RKT 362
Cdd:cd01374    71 GYNGTIFAYGQTSSGKTFTMSGDED------EPGIIPLAIRDIFSKIQDTPDREFLLRV--SYLEIYNEKINDLLSpTSQ 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH--------GKFS 434
Cdd:cd01374   143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvrvSTLN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 435 LIDLAGNERGADT-SSADRqtRLEGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSFIGeNSRTCMIATIS 511
Cdd:cd01374   223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLSEGKVggHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                         330       340
                  ....*....|....*....|.
gi 1821619592 512 PGMASCENTLNTLRYANRVKE 532
Cdd:cd01374   300 PAESHVEETLNTLKFASRAKK 320
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
203-531 2.59e-77

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 252.27  E-value: 2.59e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQ-KVDLTRYLENQTFRFDYAFD--DS-----APNEMVYRFTA 274
Cdd:cd01365     2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYWshDSedpnyASQEQVYEDLG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 275 RPLVETIFErGMATC-FAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGK 353
Cdd:cd01365    82 EELLQHAFE-GYNVClFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEK 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 354 VFDLLNRKTK-----LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK-- 426
Cdd:cd01365   155 VRDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrh 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 427 -------GKLHGKFSLIDLAGNERgADTSSADrQTRL-EGAEINKSLLALKECIRAL--------GRNKPHTPFRASKLT 490
Cdd:cd01365   235 daetnltTEKVSKISLVDLAGSER-ASSTGAT-GDRLkEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDSVLT 312
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1821619592 491 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 531
Cdd:cd01365   313 WLLKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
204-531 2.15e-73

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 240.31  E-value: 2.15e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 204 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 283
Cdd:cd01369     4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATSE---------TGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 284 RGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLLN-RKT 362
Cdd:cd01369    75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIYS-MDENLEFHVKVSYFEIYMEKIRDLLDvSKT 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGKFSLID 437
Cdd:cd01369   151 NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENvetekKKSGKLYLVD 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 438 LAGNERgADTSSADRQTRLEGAEINKSLLALKECIRALG-RNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGMAS 516
Cdd:cd01369   231 LAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYN 308
                         330
                  ....*....|....*
gi 1821619592 517 CENTLNTLRYANRVK 531
Cdd:cd01369   309 ESETLSTLRFGQRAK 323
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
206-531 8.08e-73

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 239.29  E-value: 8.08e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 206 VCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFER 284
Cdd:cd01371     5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKA----TANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 285 GMATCFAYGQTGSGKTHTMGGDfsgKNQDCSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL--NRKT 362
Cdd:cd01371    81 YNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLLgkDQTK 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR-----KGKLH---GKFS 434
Cdd:cd01371   157 RLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvGKLN 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 435 LIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSfIGENSRTCMIATISPG 513
Cdd:cd01371   237 LVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKsTHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGPA 314
                         330
                  ....*....|....*...
gi 1821619592 514 MASCENTLNTLRYANRVK 531
Cdd:cd01371   315 DYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
204-531 1.25e-69

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 230.56  E-value: 1.25e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 204 ICVCVRKRPLNKKEtQMKDLDVITIPSkdvvmvhEPKQKVDLTR-YLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIF 282
Cdd:cd01366     4 IRVFCRVRPLLPSE-ENEDTSHITFPD-------EDGQTIELTSiGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ErGMATC-FAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-- 359
Cdd:cd01366    75 D-GYNVCiFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLApg 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 360 --RKTKLRVLEDG-KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR-----RKGKLHG 431
Cdd:cd01366   148 naPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrnlqTGEISVG 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 432 KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGeNSRTCMIATIS 511
Cdd:cd01366   228 KLNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNIS 305
                         330       340
                  ....*....|....*....|
gi 1821619592 512 PGMASCENTLNTLRYANRVK 531
Cdd:cd01366   306 PAESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
201-531 2.53e-68

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 227.98  E-value: 2.53e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 201 EHRICVCVRKRPLNKKETQMKDLDVITI--PSKDVVMVHEPKQKVDLTRylenqTFRFDYAFDDSAPNEMVYRFTARPLV 278
Cdd:cd01364     1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 279 ETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN-----QDCSKGIYALAARDVFlmlkkpnyKKLELQ-----VYATFFE 348
Cdd:cd01364    76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSPNEeytweLDPLAGIIPRTLHQLF--------EKLEDNgteysVKVSYLE 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 349 IYSGKVFDLL----NRKTKLRVLED--GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQII 422
Cdd:cd01364   148 IYNEELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSIT 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 423 LRRK------------GKLHgkfsLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 490
Cdd:cd01364   228 IHIKettidgeelvkiGKLN----LVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERAPHVPYRESKLT 302
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1821619592 491 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 531
Cdd:cd01364   303 RLLQDS-LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
206-532 1.41e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 218.84  E-value: 1.41e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 206 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:COG5059     9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 361
Cdd:COG5059    87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 362 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 436
Cdd:COG5059   160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 437 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 513
Cdd:COG5059   240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                         330
                  ....*....|....*....
gi 1821619592 514 MASCENTLNTLRYANRVKE 532
Cdd:COG5059   317 SNSFEETINTLKFASRAKS 335
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
208-531 1.03e-55

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 193.57  E-value: 1.03e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 208 VRKRPLNKKETQMKDLDvitiPSKDVVMVHEPKqkvDLTR-YLENQ----TFRFDYAFDDsAPNEMVYRFTARPLVETIF 282
Cdd:cd01375     6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQqedwSFKFDGVLHN-ASQELVYETVAKDVVSSAL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLNRK- 361
Cdd:cd01375    78 AGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFRMIEERPTKAYTVHV--SYLEIYNEQLYDLLSTLp 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 362 ------TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 428
Cdd:cd01375   153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 429 LHGKFSLIDLAGNERGADTSSADrQTRLEGAEINKSLLALKECIRALGR-NKPHTPFRASKLTQVLRDSfIGENSRTCMI 507
Cdd:cd01375   233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSDkDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                         330       340
                  ....*....|....*....|....
gi 1821619592 508 ATISPGMASCENTLNTLRYANRVK 531
Cdd:cd01375   311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
202-531 2.44e-53

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 187.33  E-value: 2.44e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 202 HRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKvdltrylenqTFRFDYAFDDSAPNEMVYRFTARPLVETI 281
Cdd:cd01373     1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPK----------TFTFDHVADSNTNQESVFQSVGKPIVESC 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 282 FERGMATCFAYGQTGSGKTHTMGGDfSGKNQDCSKGIYALAARdVFLML-------KKPNYKKLELQVYATFFEIYSGKV 354
Cdd:cd01373    71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPR-IFEYLfsliqreKEKAGEGKSFLCKCSFLEIYNEQI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 355 FDLLNR-KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-- 431
Cdd:cd01373   149 YDLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfv 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 432 -----KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRAL-----GRNKpHTPFRASKLTQVLRDSfIGEN 501
Cdd:cd01373   229 nirtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALvdvahGKQR-HVCYRDSKLTFLLRDS-LGGN 305
                         330       340       350
                  ....*....|....*....|....*....|
gi 1821619592 502 SRTCMIATISPGMASCENTLNTLRYANRVK 531
Cdd:cd01373   306 AKTAIIANVHPSSKCFGETLSTLRFAQRAK 335
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
206-527 4.79e-52

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 183.75  E-value: 4.79e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 206 VCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTR-----YLENQtFRFDYAFDDSAPNEMVYRFTARPLVET 280
Cdd:cd01368     5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSernggQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 281 IFERGMATCFAYGQTGSGKTHTMGGdfsgknqdcSKGIYALAARDVFLMLKK-PNYkklelQVYATFFEIYSGKVFDLLN 359
Cdd:cd01368    84 LLHGKNGLLFTYGVTNSGKTYTMQG---------SPGDGGILPRSLDVIFNSiGGY-----SVFVSYIEIYNEYIYDLLE 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 360 --------RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQI-ILRRKGKLH 430
Cdd:cd01368   150 pspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 431 G------------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRN-----KPHTPFRASKLTQVL 493
Cdd:cd01368   230 GdvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLF 308
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1821619592 494 RDSFIGEnSRTCMIATISPGMASCENTLNTLRYA 527
Cdd:cd01368   309 QNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
203-531 1.20e-50

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 179.24  E-value: 1.20e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 203 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPkqkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 282
Cdd:cd01376     1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 283 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKkleLQVYATFFEIYSGKVFDLLNRKT 362
Cdd:cd01376    75 EGQNATVFAYGSTGAGKTFTMLGSPE------QPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEPAS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 363 K-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL------HGKFSL 435
Cdd:cd01376   146 KeLVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 436 IDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGM 514
Cdd:cd01376   226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                         330
                  ....*....|....*..
gi 1821619592 515 ASCENTLNTLRYANRVK 531
Cdd:cd01376   303 TFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
106-531 3.56e-39

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 156.25  E-value: 3.56e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  106 PRdNRVVGSARARPSQLPEQSSSAQQNARRKSNCVKEVEK-------LQEKREKRRLQQQELREKRAQDVDATNPNYEIM 178
Cdd:PLN03188     7 PR-NAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPppdlnslTSDLKPDHRSASAKLKSPLPPRPPSSNPLKRKL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  179 CMirdfrgsldyrPLTTADPIDEHRICVCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDY 258
Cdd:PLN03188    86 SA-----------ETAPENGVSDSGVKVIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDS 138
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  259 AFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML------- 330
Cdd:PLN03188   139 IADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarinee 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  331 -KKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSA 408
Cdd:PLN03188   218 qIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSI 297
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592  409 NAHSSRSHAVFQIIL--RRKGKLHG-------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR-- 477
Cdd:PLN03188   298 NAESSRSHSVFTCVVesRCKSVADGlssfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEis 376
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1821619592  478 --NKP-HTPFRASKLTQVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 531
Cdd:PLN03188   377 qtGKQrHIPYRDSRLTFLLQES-LGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
244-512 2.83e-12

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 65.44  E-value: 2.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 244 DLTRYLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIFE-RGMATCFAYGQTGSGKTHTMggdfsgknqdcsKGIYALA 322
Cdd:cd01363    10 ELPIYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDgYNNQSIFAYGESGAGKTETM------------KGVIPYL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 323 ARDVFlmlkkpnykklelqvyatffeiysgkvfdllNRKTKLRVLEDgkqqvqvVGLQEREVKCVEDVLKLIDIGNSCRT 402
Cdd:cd01363    77 ASVAF-------------------------------NGINKGETEGW-------VYLTEITVTLEDQILQANPILEAFGN 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 403 SgQTSANAHSSRSHAVFQIILrrkgklhgkfsliDLAGNERgadtssadrqtrlegaeINKSLLALKECIRAlgrnkpht 482
Cdd:cd01363   119 A-KTTRNENSSRFGKFIEILL-------------DIAGFEI-----------------INESLNTLMNVLRA-------- 159
                         250       260       270
                  ....*....|....*....|....*....|
gi 1821619592 483 pfraskltqvlrdsfigenSRTCMIATISP 512
Cdd:cd01363   160 -------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
199-358 2.37e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 41.82  E-value: 2.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 199 IDEHR--ICVCVRKRPLNKKETQmkdldvITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTaRP 276
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821619592 277 LVETIFeRGMATC-FAYGQTGSGKTHTMggdfsgknqdcskgiyALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVF 355
Cdd:pfam16796  79 LVQSCL-DGYNVCiFAYGQTGSGSNDGM----------------IPRAREQIFRFISSLKKGWKYTIELQFVEIYNESSQ 141

                  ...
gi 1821619592 356 DLL 358
Cdd:pfam16796 142 DLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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