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Conserved domains on  [gi|1821955880|ref|NP_001365957|]
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histone PARylation factor 1 isoform 4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2228 super family cl20146
Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of ...
 16-128 1.11e-76

Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of approximately 700 residues found from worms to humans.


The actual alignment was detected with superfamily member pfam10228:

Pssm-ID: 463010  Cd Length: 251  Bit Score: 227.87  E-value: 1.11e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821955880  16 QVVTKTFHGAGLVVPVD-KNDVGYRELPETDADLKRICKAVVDAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELG 94
Cdd:pfam10228 138 KVVTKTFHGAGIVVPVDkKTDVGYRPLPETDANLKKILKKIVEAKNDSERDKVFDPLQELVTFVQIANDECDYGMGLELG 217

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1821955880  95 MDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKI 128
Cdd:pfam10228 218 IDLFCYGSKYFHKVILQLLPTAYKLLKRPLFAEI 251
 
Name Accession Description Interval E-value
DUF2228 pfam10228
Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of ...
 16-128 1.11e-76

Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of approximately 700 residues found from worms to humans.


Pssm-ID: 463010  Cd Length: 251  Bit Score: 227.87  E-value: 1.11e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821955880  16 QVVTKTFHGAGLVVPVD-KNDVGYRELPETDADLKRICKAVVDAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELG 94
Cdd:pfam10228 138 KVVTKTFHGAGIVVPVDkKTDVGYRPLPETDANLKKILKKIVEAKNDSERDKVFDPLQELVTFVQIANDECDYGMGLELG 217

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1821955880  95 MDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKI 128
Cdd:pfam10228 218 IDLFCYGSKYFHKVILQLLPTAYKLLKRPLFAEI 251
 
Name Accession Description Interval E-value
DUF2228 pfam10228
Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of ...
 16-128 1.11e-76

Uncharacterized conserved protein (DUF2228); This is a family of conserved proteins of approximately 700 residues found from worms to humans.


Pssm-ID: 463010  Cd Length: 251  Bit Score: 227.87  E-value: 1.11e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821955880  16 QVVTKTFHGAGLVVPVD-KNDVGYRELPETDADLKRICKAVVDAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELG 94
Cdd:pfam10228 138 KVVTKTFHGAGIVVPVDkKTDVGYRPLPETDANLKKILKKIVEAKNDSERDKVFDPLQELVTFVQIANDECDYGMGLELG 217

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1821955880  95 MDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKI 128
Cdd:pfam10228 218 IDLFCYGSKYFHKVILQLLPTAYKLLKRPLFAEI 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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