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Conserved domains on  [gi|1843419912|ref|NP_001369611|]
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muscleblind-like protein 2 isoform 25 [Homo sapiens]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10646956)

zinc finger CCCH domain-containing protein similar to Homo sapiens Muscleblind-like proteins

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
83-107 2.14e-05

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.31  E-value: 2.14e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419912   83 KLEVCREFQRGNCARGEtDCRFAHP 107
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
120-142 6.32e-03

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 6.32e-03
                           10        20
                   ....*....|....*....|....
gi 1843419912  120 VTVCMDYIKGRCMR-EKCKYFHPP 142
Cdd:smart00356   4 TELCKFFKRGYCPRgDRCKFAHPL 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
83-107 2.14e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.31  E-value: 2.14e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419912   83 KLEVCREFQRGNCARGEtDCRFAHP 107
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
82-107 4.14e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.79  E-value: 4.14e-04
                          10        20
                  ....*....|....*....|....*..
gi 1843419912  82 DKLEVCREFQR-GNCARGETdCRFAHP 107
Cdd:pfam00642   1 YKTELCRFFLRtGYCKYGDR-CKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
120-142 6.32e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 6.32e-03
                           10        20
                   ....*....|....*....|....
gi 1843419912  120 VTVCMDYIKGRCMR-EKCKYFHPP 142
Cdd:smart00356   4 TELCKFFKRGYCPRgDRCKFAHPL 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
83-107 2.14e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.31  E-value: 2.14e-05
                           10        20
                   ....*....|....*....|....*
gi 1843419912   83 KLEVCREFQRGNCARGEtDCRFAHP 107
Cdd:smart00356   3 KTELCKFFKRGYCPRGD-RCKFAHP 26
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
82-107 4.14e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 36.79  E-value: 4.14e-04
                          10        20
                  ....*....|....*....|....*..
gi 1843419912  82 DKLEVCREFQR-GNCARGETdCRFAHP 107
Cdd:pfam00642   1 YKTELCRFFLRtGYCKYGDR-CKFAHG 26
zf-CCCH_4 pfam18044
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ...
 86-107 3.67e-03

CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases.


Pssm-ID: 465626  Cd Length: 22  Bit Score: 34.10  E-value: 3.67e-03
                          10        20
                  ....*....|....*....|..
gi 1843419912  86 VCREFQRGNCARGEtDCRFAHP 107
Cdd:pfam18044   2 LCRYFQKGGCRYGD-NCRFSHD 22
ZnF_C3H1 smart00356
zinc finger;
120-142 6.32e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 6.32e-03
                           10        20
                   ....*....|....*....|....
gi 1843419912  120 VTVCMDYIKGRCMR-EKCKYFHPP 142
Cdd:smart00356   4 TELCKFFKRGYCPRgDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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