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Conserved domains on  [gi|1859469520|ref|NP_001371348|]
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WD repeat-containing protein 5 isoform 4 [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 10077586)

WD40 repeat domain-containing protein similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

PubMed:  10322433

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
37-288 1.02e-87

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


:

Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 263.43  E-value: 1.02e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 115
Cdd:cd00200    43 LLRTLKGHTGPVRDVAASADGTYLASgSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 116 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTL 195
Cdd:cd00200   123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTI 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 196 KLWDYSKGKCLKTYTGHKNekYCIFANFSvTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 275
Cdd:cd00200   202 KLWDLSTGKCLGTLRGHEN--GVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
                         250
                  ....*....|...
gi 1859469520 276 AALenDKTIKLWK 288
Cdd:cd00200   279 GSA--DGTIRIWD 289
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
37-288 1.02e-87

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 263.43  E-value: 1.02e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 115
Cdd:cd00200    43 LLRTLKGHTGPVRDVAASADGTYLASgSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 116 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTL 195
Cdd:cd00200   123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTI 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 196 KLWDYSKGKCLKTYTGHKNekYCIFANFSvTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 275
Cdd:cd00200   202 KLWDLSTGKCLGTLRGHEN--GVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
                         250
                  ....*....|...
gi 1859469520 276 AALenDKTIKLWK 288
Cdd:cd00200   279 GSA--DGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
37-288 4.45e-46

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 161.02  E-value: 4.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLA--SSYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIW 113
Cdd:COG2319   147 LIRTLEGHSESVTSLAFSPDGKLLAsgSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGlLIASGSSDGTIRLW 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 114 DVKTGKCLK-TLPAHSDPVSAVhFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 192
Cdd:COG2319   227 DLSTGKLLRsTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 193 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDvVISTACHPTENI 272
Cdd:COG2319   306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRV 384
                         250
                  ....*....|....*.
gi 1859469520 273 IASAalENDKTIKLWK 288
Cdd:COG2319   385 VSSG--STDGTVRLWD 398
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
41-244 1.04e-13

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 71.27  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSPNGEWLASS-YDKTLKIWDVSS----GKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 111
Cdd:PLN00181  479 LLNSSNLVCAIGFDRDGEFFATAgVNKKIKIFECESiikdGRDIHypvvELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 112 IWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTL------------------------ 166
Cdd:PLN00181  559 VWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIktkaniccvqfpsesgrslafgsa 638
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 167 ------IDDDNPP------------VSFVKFSPNGKYILAATlDNTLKLWDYSKGKC------LKTYTGHKNEKYciFAN 222
Cdd:PLN00181  639 dhkvyyYDLRNPKlplctmighsktVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISginetpLHSFMGHTNVKN--FVG 715
                         250       260
                  ....*....|....*....|..
gi 1859469520 223 FSVTGGkWIVSGSEDNLVYIWN 244
Cdd:PLN00181  716 LSVSDG-YIATGSETNEVFVYH 736
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
75-114 9.43e-11

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 55.78  E-value: 9.43e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1859469520   75 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 114
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
76-114 9.44e-10

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 53.12  E-value: 9.44e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1859469520  76 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 114
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
37-288 1.02e-87

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 263.43  E-value: 1.02e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 115
Cdd:cd00200    43 LLRTLKGHTGPVRDVAASADGTYLASgSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 116 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTL 195
Cdd:cd00200   123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTI 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 196 KLWDYSKGKCLKTYTGHKNekYCIFANFSvTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 275
Cdd:cd00200   202 KLWDLSTGKCLGTLRGHEN--GVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
                         250
                  ....*....|...
gi 1859469520 276 AALenDKTIKLWK 288
Cdd:cd00200   279 GSA--DGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
33-199 1.25e-52

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 173.68  E-value: 1.25e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  33 PNYALKFTLAGHTKAVSSVKFSPNGEWLA-SSYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 111
Cdd:cd00200   123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVAsSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 112 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATL 191
Cdd:cd00200   203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSA 281

                  ....*...
gi 1859469520 192 DNTLKLWD 199
Cdd:cd00200   282 DGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
37-288 4.45e-46

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 161.02  E-value: 4.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLA--SSYDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIW 113
Cdd:COG2319   147 LIRTLEGHSESVTSLAFSPDGKLLAsgSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGlLIASGSSDGTIRLW 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 114 DVKTGKCLK-TLPAHSDPVSAVhFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 192
Cdd:COG2319   227 DLSTGKLLRsTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 193 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDvVISTACHPTENI 272
Cdd:COG2319   306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRV 384
                         250
                  ....*....|....*.
gi 1859469520 273 IASAalENDKTIKLWK 288
Cdd:COG2319   385 VSSG--STDGTVRLWD 398
WD40 COG2319
WD40 repeat [General function prediction only];
40-288 2.89e-41

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 148.31  E-value: 2.89e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  40 TLAGHTKAVSSVKFSPNGEWLASS--YDKTLKIWDVSSGKCLK-TLKGHSNYVFCCnFNPQSNLIVSGSFDESVRIWDVK 116
Cdd:COG2319   193 TLAGHTDPVSSLAFSPDGGLLIASgsSDGTIRLWDLSTGKLLRsTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 117 TGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAA-TLDN 193
Cdd:COG2319   272 SSSsLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLtLKGHEGPVSSLSFSPDGSLLVSGgSDDG 351
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 194 TLKLWDYSKGKCLKTYTGHKNEKYCIFANfsvtGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 273
Cdd:COG2319   352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSP----DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427
                         250
                  ....*....|....*
gi 1859469520 274 ASAALenDKTIKLWK 288
Cdd:COG2319   428 ASGSS--DNTIRLWD 440
WD40 COG2319
WD40 repeat [General function prediction only];
16-290 3.04e-39

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 142.92  E-value: 3.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  16 QPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSG-KCLKTLKGHSNY----V 89
Cdd:COG2319    36 SESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSgSSDGTIKLWDLDNGeKLIKSLEGLHDSsvskL 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  90 FCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLKTLi 167
Cdd:COG2319   116 ALSSPDGNSILLASSSLDGTVKLWDLSTpGKLIRTLEGHSESVTSLAFSPDGKLLASgSSLDGTIKLWDLRTGKPLSTL- 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 168 DDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANfsvtGGKWIVSGSEDNLVYIWNL 245
Cdd:COG2319   195 AGHTDPVSSLAFSPDGGLLIAsGSSDGTIRLWDLSTGKLLRsTLSGHSDSVVSSFSP----DGSLLASGSSDGTIRLWDL 270
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1859469520 246 QT-KEIVQKLQGHTDVVISTACHPTENIIASAAleNDKTIKLWKSD 290
Cdd:COG2319   271 RSsSSLLRTLSGHSSSVLSVAFSPDGKLLASGS--SDGTVRLWDLE 314
WD40 COG2319
WD40 repeat [General function prediction only];
37-254 1.25e-35

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 133.29  E-value: 1.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVkFSPNGEWLAS-SYDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 114
Cdd:COG2319   234 LRSTLSGHSDSVVSS-FSPDGSLLASgSSDGTIRLWDLrSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 115 VKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLIDDDNppVSFVKFSPNGKYILAATL 191
Cdd:COG2319   313 LETGKLlsSLTLKGHEGPVSSLSFSPDGSLLVSGgSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGST 390
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1859469520 192 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSvtgGKWIVSGSEDNLVYIWNLQTKEIVQKL 254
Cdd:COG2319   391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD---GKSLASGSSDNTIRLWDLKTSLKSVSF 450
WD40 COG2319
WD40 repeat [General function prediction only];
37-290 1.49e-30

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 119.42  E-value: 1.49e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSGkclkTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 115
Cdd:COG2319    19 SELGPSLNSLSLLSLGSSESGILLLAlLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 116 KTG-KCLKTLP-AHSDPVSAVHF-NRDGSLIVS--SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA- 189
Cdd:COG2319    95 DNGeKLIKSLEgLHDSSVSKLALsSPDGNSILLasSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGs 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 190 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIfaNFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-KLQGHTDVVIStACHP 268
Cdd:COG2319   175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSL--AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRsTLSGHSDSVVS-SFSP 251
                         250       260
                  ....*....|....*....|..
gi 1859469520 269 TENIIASAalENDKTIKLWKSD 290
Cdd:COG2319   252 DGSLLASG--SSDGTIRLWDLR 271
WD40 COG2319
WD40 repeat [General function prediction only];
31-202 5.81e-26

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 106.33  E-value: 5.81e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQ-SNLIVSGSF 106
Cdd:COG2319   270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASgSSDGTVRLWDLETGKLlsSLTLKGHEGPVSSLSFSPDgSLLVSGGSD 349
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 107 DESVRIWDVKTGKCLKTLPAHSdPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYI 186
Cdd:COG2319   350 DGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS-RVTSLDFSPDGKSL 427
                         170
                  ....*....|....*.
gi 1859469520 187 LAATLDNTLKLWDYSK 202
Cdd:COG2319   428 ASGSSDNTIRLWDLKT 443
WD40 COG2319
WD40 repeat [General function prediction only];
38-194 3.08e-18

WD40 repeat [General function prediction only];


Pssm-ID: 225201 [Multi-domain]  Cd Length: 466  Bit Score: 84.37  E-value: 3.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  38 KFTLAGHTKAVSSVKFSPNGEWLASSY--DKTLKIWDVSSGKCLKTLKGHSNyVFCCNFNPQSNLIVSGSFDESVRIWDV 115
Cdd:COG2319   321 SLTLKGHEGPVSSLSFSPDGSLLVSGGsdDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDL 399
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1859469520 116 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASgqclktlidddnpPVSFVKFSPNGKYILAATLDNT 194
Cdd:COG2319   400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT-------------SLKSVSFSPDGKVLASKSSDLS 465
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
41-244 1.04e-13

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 71.27  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSPNGEWLASS-YDKTLKIWDVSS----GKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 111
Cdd:PLN00181  479 LLNSSNLVCAIGFDRDGEFFATAgVNKKIKIFECESiikdGRDIHypvvELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 112 IWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTL------------------------ 166
Cdd:PLN00181  559 VWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIktkaniccvqfpsesgrslafgsa 638
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 167 ------IDDDNPP------------VSFVKFSPNGKYILAATlDNTLKLWDYSKGKC------LKTYTGHKNEKYciFAN 222
Cdd:PLN00181  639 dhkvyyYDLRNPKlplctmighsktVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISginetpLHSFMGHTNVKN--FVG 715
                         250       260
                  ....*....|....*....|..
gi 1859469520 223 FSVTGGkWIVSGSEDNLVYIWN 244
Cdd:PLN00181  716 LSVSDG-YIATGSETNEVFVYH 736
PTZ00421 PTZ00421
coronin; Provisional
41-160 4.91e-12

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 65.68  E-value: 4.91e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSP--NGEWLASSYDKTLKIWDV-------SSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESV 110
Cdd:PTZ00421   71 LLGQEGPIIDVAFNPfdPQKLFTASEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAmNVLASAGADMVV 150
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1859469520 111 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 160
Cdd:PTZ00421  151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
75-114 9.43e-11

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 55.78  E-value: 9.43e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1859469520   75 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 114
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
117-156 2.61e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 54.63  E-value: 2.61e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1859469520  117 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 156
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
76-114 9.44e-10

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 53.12  E-value: 9.44e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1859469520  76 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 114
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 pfam00400
WD domain, G-beta repeat;
118-156 1.21e-09

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 52.73  E-value: 1.21e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1859469520 118 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 156
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
PTZ00421 PTZ00421
coronin; Provisional
41-179 3.90e-09

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 57.21  E-value: 3.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSPNGE-WLASS-YDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 118
Cdd:PTZ00421  121 LQGHTKKVGIVSFHPSAMnVLASAgADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1859469520 119 KCLKTLPAHSDPVS--AVHFNRDGSLI---VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 179
Cdd:PTZ00421  201 TIVSSVEAHASAKSqrCLWAKRKDLIItlgCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPF 266
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
72-287 2.17e-08

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 55.09  E-value: 2.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  72 DVSSGKCLKTlkghSNYVFCCNFNPQSNLIVSGSFDESVRIWD----VKTGKCLKtLP----AHSDPVSAVHFNRD-GSL 142
Cdd:PLN00181  473 DLKQGDLLNS----SNLVCAIGFDRDGEFFATAGVNKKIKIFEcesiIKDGRDIH-YPvvelASRSKLSGICWNSYiKSQ 547
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 143 IVSSSYDGLCRIWDTASGQcLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNeKYCIfa 221
Cdd:PLN00181  548 VASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASgSDDGSVKLWSINQGVSIGTIKTKAN-ICCV-- 623
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1859469520 222 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAaleNDKTIKLW 287
Cdd:PLN00181  624 QFPSESGRSLAFGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRFVDSSTLVSSS---TDNTLKLW 687
WD40 pfam00400
WD domain, G-beta repeat;
37-72 3.13e-08

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 48.88  E-value: 3.13e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1859469520  37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWD 72
Cdd:pfam00400   3 LLKTLEGHTGSVTSLAFSPDGKLLASgSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
37-72 4.62e-08

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 48.46  E-value: 4.62e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1859469520   37 LKFTLAGHTKAVSSVKFSPNGEWLAS-SYDKTLKIWD 72
Cdd:smart00320   4 LLKTLKGHTGPVTSVAFSPDGKYLASgSDDGTIKLWD 40
PTZ00420 PTZ00420
coronin; Provisional
41-119 2.20e-06

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 48.79  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSP-NGEWLAS-SYDKTLKIWDV----SSGKCLK----TLKGHSNYVFCCNFNPQSNLIV-SGSFDES 109
Cdd:PTZ00420   70 LKGHTSSILDLQFNPcFSEILASgSEDLTIRVWEIphndESVKEIKdpqcILKGHKKKISIIDWNPMNYYIMcSSGFDSF 149
                          90
                  ....*....|
gi 1859469520 110 VRIWDVKTGK 119
Cdd:PTZ00420  150 VNIWDIENEK 159
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
40-146 4.82e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 47.77  E-value: 4.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  40 TLAGHTKAVSSVKFSPNGEWLASSYDKTLKIWDVS---SG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 113
Cdd:PLN00181  656 TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSmsiSGineTPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1859469520 114 DvktgkclKTLPA--------HSDPVSAVHFNrDGSLIVSS 146
Cdd:PLN00181  736 H-------KAFPMpvlsykfkTIDPVSGLEVD-DASQFISS 768
PTZ00420 PTZ00420
coronin; Provisional
82-156 2.70e-05

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 45.33  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  82 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWD----------VKTGKCLktLPAHSDPVSAVHFNRDGSLIV-SSSYD 149
Cdd:PTZ00420   70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEiphndesvkeIKDPQCI--LKGHKKKISIIDWNPMNYYIMcSSGFD 147

                  ....*..
gi 1859469520 150 GLCRIWD 156
Cdd:PTZ00420  148 SFVNIWD 154
CDC55 COG5170
Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms];
174-238 2.73e-05

Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms];


Pssm-ID: 227498 [Multi-domain]  Cd Length: 460  Bit Score: 45.02  E-value: 2.73e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1859469520 174 VSFVKFSPNGKYILAATLdNTLKLWDYSKGK-CLKTYTGHKN---------EKYCIFANFSVT---GGKWIVSGSEDN 238
Cdd:COG5170   283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKnPIKTIPMHCDlmdelndvyENDAIFDKFEISfsgDDKHVLSGSYSN 359
COG5354 COG5354
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
48-260 4.46e-05

Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];


Pssm-ID: 227657 [Multi-domain]  Cd Length: 561  Bit Score: 44.48  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  48 VSSVKFSPNGEWLASSYDKTLKIWDVSSGKCLKTLKghSNYVFCCNFNPQSNLIVSGSfDESVRiwdvktgkclktlpah 127
Cdd:COG5354    35 VAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS-REPII---------------- 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 128 sdpvsavHFNRDGSlivSSSYDGLCRIWDTASGQCLKTLIDDDNPPV--SFVKFSPNGKYiLAATLDNTLKLWDYSK--- 202
Cdd:COG5354    96 -------EPEIEIS---PFTSKNNVFVWDIASGMIVFSFNGISQPYLgwPVLKFSIDDKY-VARVVGSSLYIHEITDnie 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 203 ----------------------GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS---EDNLVYIWNLQTKEIVQKLQGH 257
Cdd:COG5354   165 ehpfknlrpvgildfsispegnHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNlfkVSGVQLKWQVLGKYLLVLVMTH 244

                  ...
gi 1859469520 258 TDV 260
Cdd:COG5354   245 TKS 247
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
159-199 6.08e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 39.60  E-value: 6.08e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1859469520  159 SGQCLKTLIDDDNPpVSFVKFSPNGKYILAATLDNTLKLWD 199
Cdd:smart00320   1 SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
203-244 8.55e-05

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 39.25  E-value: 8.55e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1859469520 203 GKCLKTYTGHKNEKYCIFANFSvtgGKWIVSGSEDNLVYIWN 244
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPD---GKLLASGSDDGTVKVWD 39
WD40 pfam00400
WD domain, G-beta repeat;
160-199 9.07e-05

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 38.87  E-value: 9.07e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1859469520 160 GQCLKTLIDDDNPpVSFVKFSPNGKYILAATLDNTLKLWD 199
Cdd:pfam00400   1 GKLLKTLEGHTGS-VTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
247-288 9.57e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 38.83  E-value: 9.57e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1859469520  247 TKEIVQKLQGHTDVVISTACHPTENIIASAAleNDKTIKLWK 288
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGS--DDGTIKLWD 40
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
69-137 1.94e-04

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 39.57  E-value: 1.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1859469520  69 KIWDVSsgkclktLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 137
Cdd:pfam12894  28 RVWTLS-------PDKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWG 89
CDC55 COG5170
Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms];
41-117 2.57e-04

Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms];


Pssm-ID: 227498 [Multi-domain]  Cd Length: 460  Bit Score: 42.32  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  41 LAGHTKAVSSVKFSPNGEWLASSYDKTLKIWDVSSGK-CLKTLKGHSNYV---------------FCCNFNPQSNLIVSG 104
Cdd:COG5170   276 FEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKnPIKTIPMHCDLMdelndvyendaifdkFEISFSGDDKHVLSG 355
                          90
                  ....*....|...
gi 1859469520 105 SFDESVRIWDVKT 117
Cdd:COG5170   356 SYSNNFGIYPTDS 368
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
202-244 2.58e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 37.68  E-value: 2.58e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1859469520  202 KGKCLKTYTGHKNEKYCIFANFSvtgGKWIVSGSEDNLVYIWN 244
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPD---GKYLASGSDDGTIKLWD 40
COG5354 COG5354
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
165-251 2.00e-03

Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];


Pssm-ID: 227657 [Multi-domain]  Cd Length: 561  Bit Score: 39.47  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520 165 TLIDDDNPPVSFVKFSPNGKYILAATLDNtLKLWDY-SKGKCLKTYtgHKNEKYCIFAnfsvTGGKWIVSGS-------- 235
Cdd:COG5354    26 TRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGpSKAKLVRFR--HPDVKYLDFS----PNEKYLVTWSrepiiepe 98
                          90       100
                  ....*....|....*....|...
gi 1859469520 236 -------EDNLVYIWNLQTKEIV 251
Cdd:COG5354    99 ieispftSKNNVFVWDIASGMIV 121
WD40 pfam00400
WD domain, G-beta repeat;
248-287 2.12e-03

WD domain, G-beta repeat;


Pssm-ID: 425662 [Multi-domain]  Cd Length: 39  Bit Score: 35.01  E-value: 2.12e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1859469520 248 KEIVQKLQGHTDVVISTACHPTENIIASAAleNDKTIKLW 287
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGS--DDGTVKVW 38
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
94-166 9.69e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 34.56  E-value: 9.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859469520  94 FNPQSNLIVSGSFDESV--------RIWDVktgkclkTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 165
Cdd:pfam12894   3 WCPTMDLIALATEDGELllhrlnwqRVWTL-------SPDKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHH 75

                  .
gi 1859469520 166 L 166
Cdd:pfam12894  76 F 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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