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Conserved domains on  [gi|1908918648|ref|NP_001374110|]
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ataxin-2-like protein isoform 17 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
123-196 1.49e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 433954  Cd Length: 78  Bit Score: 83.76  E-value: 1.49e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTVKNGEVYEGIFSTASpeKDFGVVLKMARRIDKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
264-326 2.70e-18

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 429091 [Multi-domain]  Cd Length: 65  Bit Score: 79.54  E-value: 2.70e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PBP1 super family cl34930
PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and ...
209-750 2.45e-09

PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification];


The actual alignment was detected with superfamily member COG5180:

Pssm-ID: 227507 [Multi-domain]  Cd Length: 654  Bit Score: 61.28  E-value: 2.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  209 TDSAIAMNSKvngEHKEKVLQRW--EGGDSNSDDYDLE-SDMSNGWDpneMFKFNEENYGVKTTYDSSLssYTVPLEKDn 285
Cdd:COG5180    109 TDVEISGGPR---EIKERKLMPWapLPKAADLEKSGKAlEEDCKDWD---QFAANEKLFGVKSRFDEEL--YTEVIDKS- 179
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  286 SEEFRQRELRAAQLAREIESSPQYRLRIAME-----NDDGRTEEEKHSAVQRQGS---GRESPSLASREGKYIPLpqRVR 357
Cdd:COG5180    180 SPSYKSKVQEARRIAKEIELSATTNIHIAEErglgnDDSGLDEEDLYSGVVRRGDecrSAESSNASNKENRQEKP--AAA 257
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  358 EGPRggvrcSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGgpsrmspkaqrplrgAKTLSSPSNRPSGETSVPP 437
Cdd:COG5180    258 KQPH-----HMDDDGTKRKMVIEIEGLSLLENRKPEAVSAPEAVSP---------------QSKSEGPSSGQEKEKQIKE 317
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  438 PPAAPPFLPVGRMYPPRS----PKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISpASPKISlaptdvK 513
Cdd:COG5180    318 KKSFSYGWKHTKFDSSKNllevIKSKFKSLFDISSGELKWGSKPPWEAKAVSIATKVSKPKKESVR-SGSKAA------K 390
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  514 ELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELrkFGAQFKLQPSSSPENSldpfpprilkeepkgkekevdgll 593
Cdd:COG5180    391 KSPSTKHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVL--FGKSFNMFIKSKEAHD------------------------ 444
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  594 tSEPMGsPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPpcpsqtgsppvgLIKGEDKDEGPVAEQVKKSTLNPNAKEFN 673
Cdd:COG5180    445 -EKKKG-DDASENMEPFFIEKPYFTAPTWLNTIEESYKT------------FFPDEDTAIQEAQTRFQQRQLNSMGNAVP 510
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  674 PTKPLLSVNKSTSTP-TSPGPRTHSTPSIPVLTAGQSGLYSPqyisYIPQihmgPAVQAPQMYPYPVSNSVPGQQGKY 750
Cdd:COG5180    511 GMNPAMGMNMGGMMGfPMGGPSASPNPMMNGFAAGSMGMYMP----FQPQ----PMFYHPSPQMMPVMGSNGAEEGGG 580
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
815-946 2.93e-06

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 51.62  E-value: 2.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  815 PSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP-----QYPSAEQPT-PQALYATVHQSYPHHATQLHAHQPQpATTPTGS 888
Cdd:PRK10263   740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPvapqpQYQQPQQPVaPQPQYQQPQQPVAPQPQYQQPQQPV-APQPQYQ 818
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1908918648  889 QPQSQHAAPSPVQQHQAGQAPhlgsgQPQQNLYHPGALTG----------TP-PS---LPPGPSAQSPQSSF 946
Cdd:PRK10263   819 QPQQPVAPQPQYQQPQQPVAP-----QPQDTLLHPLLMRNgdsrplhkptTPlPSldlLTPPPSEVEPVDTF 885
dnaA super family cl42516
chromosomal replication initiator protein DnaA;
842-1055 9.34e-03

chromosomal replication initiator protein DnaA;


The actual alignment was detected with superfamily member PRK14086:

Pssm-ID: 455861 [Multi-domain]  Cd Length: 617  Bit Score: 39.81  E-value: 9.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  842 SSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhahqPQPATTPTGSQ-PQSQHAAPSPVQQHQAGQAPHLGSGQPQQNL 920
Cdd:PRK14086    96 APPPPHARRTSEPELPRPGRRPYEGYGGPRAD-----DRPPGLPRQDQlPTARPAYPAYQQRPEPGAWPRAADDYGWQQQ 170
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  921 YHpgaltGTPPSLPPGPSAQSP--QSSFPQPaavYAIHHQQLPHGFtnmahvtqahvQTGITAAPPPHPGAPHPPQVMLL 998
Cdd:PRK14086   171 RL-----GFPPRAPYASPASYApeQERDREP---YDAGRPEYDQRR-----------RDYDHPRPDWDRPRRDRTDRPEP 231
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  999 HPPQSH---GGPPQGAVPQSGVPALSASTPSPYPyighpqgEQPGQAPGfPGGADDRIPP 1055
Cdd:PRK14086   232 PPGAGHvhrGGPGPPERDDAPVVPIRPSAPGPLA-------AQPAPAPG-PGEPTARLNP 283
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
123-196 1.49e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 433954  Cd Length: 78  Bit Score: 83.76  E-value: 1.49e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTVKNGEVYEGIFSTASpeKDFGVVLKMARRIDKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
264-326 2.70e-18

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 429091 [Multi-domain]  Cd Length: 65  Bit Score: 79.54  E-value: 2.70e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PBP1 COG5180
PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and ...
209-750 2.45e-09

PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 227507 [Multi-domain]  Cd Length: 654  Bit Score: 61.28  E-value: 2.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  209 TDSAIAMNSKvngEHKEKVLQRW--EGGDSNSDDYDLE-SDMSNGWDpneMFKFNEENYGVKTTYDSSLssYTVPLEKDn 285
Cdd:COG5180    109 TDVEISGGPR---EIKERKLMPWapLPKAADLEKSGKAlEEDCKDWD---QFAANEKLFGVKSRFDEEL--YTEVIDKS- 179
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  286 SEEFRQRELRAAQLAREIESSPQYRLRIAME-----NDDGRTEEEKHSAVQRQGS---GRESPSLASREGKYIPLpqRVR 357
Cdd:COG5180    180 SPSYKSKVQEARRIAKEIELSATTNIHIAEErglgnDDSGLDEEDLYSGVVRRGDecrSAESSNASNKENRQEKP--AAA 257
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  358 EGPRggvrcSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGgpsrmspkaqrplrgAKTLSSPSNRPSGETSVPP 437
Cdd:COG5180    258 KQPH-----HMDDDGTKRKMVIEIEGLSLLENRKPEAVSAPEAVSP---------------QSKSEGPSSGQEKEKQIKE 317
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  438 PPAAPPFLPVGRMYPPRS----PKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISpASPKISlaptdvK 513
Cdd:COG5180    318 KKSFSYGWKHTKFDSSKNllevIKSKFKSLFDISSGELKWGSKPPWEAKAVSIATKVSKPKKESVR-SGSKAA------K 390
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  514 ELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELrkFGAQFKLQPSSSPENSldpfpprilkeepkgkekevdgll 593
Cdd:COG5180    391 KSPSTKHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVL--FGKSFNMFIKSKEAHD------------------------ 444
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  594 tSEPMGsPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPpcpsqtgsppvgLIKGEDKDEGPVAEQVKKSTLNPNAKEFN 673
Cdd:COG5180    445 -EKKKG-DDASENMEPFFIEKPYFTAPTWLNTIEESYKT------------FFPDEDTAIQEAQTRFQQRQLNSMGNAVP 510
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  674 PTKPLLSVNKSTSTP-TSPGPRTHSTPSIPVLTAGQSGLYSPqyisYIPQihmgPAVQAPQMYPYPVSNSVPGQQGKY 750
Cdd:COG5180    511 GMNPAMGMNMGGMMGfPMGGPSASPNPMMNGFAAGSMGMYMP----FQPQ----PMFYHPSPQMMPVMGSNGAEEGGG 580
PHA03247 PHA03247
large tegument protein UL36; Provisional
336-949 3.09e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.94  E-value: 3.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  336 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPgpgsearginggPSRMSPKAQRP 415
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVP------------PPRPAPRPSEP 2580
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  416 LRGAKtlsspSNRPSgetsvPPPPAAPPFLPVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSasipvtssvsdpgv 495
Cdd:PHA03247  2581 AVTSR-----ARRPD-----APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAN-------------- 2636
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  496 gsiSPASPKISLAPTDVKELSTKEPGRTLEPQElARIAGKVPGLQNEQKRFQLEELRKfgaqfklqPSSSPENSLDPFPP 575
Cdd:PHA03247  2637 ---EPDPHPPPTVPPPERPRDDPAPGRVSRPRR-ARRLGRAAQASSPPQRPRRRAARP--------TVGSLTSLADPPPP 2704
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  576 rilkeepkgkekevdglltsepmgspvssktesvsdkEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLikgedkdeGP 655
Cdd:PHA03247  2705 -------------------------------------PPTPEPAPHALVSATPLPPGPAAARQASPALPA--------AP 2739
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  656 VAEQVKKSTLNPNAKEFNPTKPLlsvnksTSTPTSPGPrthstPSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMY 735
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPARPPT------TAGPPAPAP-----PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  736 PYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPmmqaaaaagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyP 815
Cdd:PHA03247  2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG----------------PPPPSLPLGGSVAPGGDVRRRPP---S 2868
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  816 SQPVFAPMLQSNP--RMLTSGSHPQAIVSSSTPQYPSAEQPTPQAlyatvhqsyPHHATQLHAHQPQPATTPTGSQPQSQ 893
Cdd:PHA03247  2869 RSPAAKPAAPARPpvRRLARPAVSRSTESFALPPDQPERPPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1908918648  894 HAAPSPVQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSSFPQP 949
Cdd:PHA03247  2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPL 2996
PRK10263 PRK10263
DNA translocase FtsK; Provisional
815-946 2.93e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 51.62  E-value: 2.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  815 PSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP-----QYPSAEQPT-PQALYATVHQSYPHHATQLHAHQPQpATTPTGS 888
Cdd:PRK10263   740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPvapqpQYQQPQQPVaPQPQYQQPQQPVAPQPQYQQPQQPV-APQPQYQ 818
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1908918648  889 QPQSQHAAPSPVQQHQAGQAPhlgsgQPQQNLYHPGALTG----------TP-PS---LPPGPSAQSPQSSF 946
Cdd:PRK10263   819 QPQQPVAPQPQYQQPQQPVAP-----QPQDTLLHPLLMRNgdsrplhkptTPlPSldlLTPPPSEVEPVDTF 885
PHA03247 PHA03247
large tegument protein UL36; Provisional
674-1061 4.71e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 4.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  674 PTKPLLSVNKSTSTPTSPGPrTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQ-QGKYRG 752
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAPP-SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRaRRLGRA 2673
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  753 AKGSLPPQRSdqHQPASAPPMMQAAAAAGPPLVAATPYssyiPYNPQQFPGQPAMMQPMAHYPSQPVfAPMLQSNPRMLT 832
Cdd:PHA03247  2674 AQASSPPQRP--RRRAARPTVGSLTSLADPPPPPPTPE----PAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPA 2746
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  833 SGSHPQAIVSSSTPQYPSA-EQPTPQALYATVhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPhl 911
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGpPAPAPPAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP-- 2820
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  912 gSGQPQQNLYHPGALTGTPPSLPPGPSAQS------------------PQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQA 973
Cdd:PHA03247  2821 -AASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  974 HVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRI 1053
Cdd:PHA03247  2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979

                   ....*...
gi 1908918648 1054 PPLPPPGE 1061
Cdd:PHA03247  2980 PQPAPSRE 2987
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
821-958 6.46e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.18  E-value: 6.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  821 APMLQSNPRMLTSGSHPQaivssstPQYpsaEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPV 900
Cdd:TIGR01628  380 PRMRQLPMGSPMGGAMGQ-------PPY---YGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRN 449
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  901 QQHQAGQAPhlgsgqpqqnlyhpgaltgtPPSLPPGPSAQSPQSSFPQPAAVYAIHHQ 958
Cdd:TIGR01628  450 AQNAAQKPP--------------------MQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
dnaA PRK14086
chromosomal replication initiator protein DnaA;
842-1055 9.34e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.81  E-value: 9.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  842 SSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhahqPQPATTPTGSQ-PQSQHAAPSPVQQHQAGQAPHLGSGQPQQNL 920
Cdd:PRK14086    96 APPPPHARRTSEPELPRPGRRPYEGYGGPRAD-----DRPPGLPRQDQlPTARPAYPAYQQRPEPGAWPRAADDYGWQQQ 170
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  921 YHpgaltGTPPSLPPGPSAQSP--QSSFPQPaavYAIHHQQLPHGFtnmahvtqahvQTGITAAPPPHPGAPHPPQVMLL 998
Cdd:PRK14086   171 RL-----GFPPRAPYASPASYApeQERDREP---YDAGRPEYDQRR-----------RDYDHPRPDWDRPRRDRTDRPEP 231
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  999 HPPQSH---GGPPQGAVPQSGVPALSASTPSPYPyighpqgEQPGQAPGfPGGADDRIPP 1055
Cdd:PRK14086   232 PPGAGHvhrGGPGPPERDDAPVVPIRPSAPGPLA-------AQPAPAPG-PGEPTARLNP 283
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
123-196 1.49e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 433954  Cd Length: 78  Bit Score: 83.76  E-value: 1.49e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTVKNGEVYEGIFSTASpeKDFGVVLKMARRIDKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
264-326 2.70e-18

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 429091 [Multi-domain]  Cd Length: 65  Bit Score: 79.54  E-value: 2.70e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PBP1 COG5180
PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and ...
209-750 2.45e-09

PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 227507 [Multi-domain]  Cd Length: 654  Bit Score: 61.28  E-value: 2.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  209 TDSAIAMNSKvngEHKEKVLQRW--EGGDSNSDDYDLE-SDMSNGWDpneMFKFNEENYGVKTTYDSSLssYTVPLEKDn 285
Cdd:COG5180    109 TDVEISGGPR---EIKERKLMPWapLPKAADLEKSGKAlEEDCKDWD---QFAANEKLFGVKSRFDEEL--YTEVIDKS- 179
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  286 SEEFRQRELRAAQLAREIESSPQYRLRIAME-----NDDGRTEEEKHSAVQRQGS---GRESPSLASREGKYIPLpqRVR 357
Cdd:COG5180    180 SPSYKSKVQEARRIAKEIELSATTNIHIAEErglgnDDSGLDEEDLYSGVVRRGDecrSAESSNASNKENRQEKP--AAA 257
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  358 EGPRggvrcSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGgpsrmspkaqrplrgAKTLSSPSNRPSGETSVPP 437
Cdd:COG5180    258 KQPH-----HMDDDGTKRKMVIEIEGLSLLENRKPEAVSAPEAVSP---------------QSKSEGPSSGQEKEKQIKE 317
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  438 PPAAPPFLPVGRMYPPRS----PKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISpASPKISlaptdvK 513
Cdd:COG5180    318 KKSFSYGWKHTKFDSSKNllevIKSKFKSLFDISSGELKWGSKPPWEAKAVSIATKVSKPKKESVR-SGSKAA------K 390
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  514 ELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELrkFGAQFKLQPSSSPENSldpfpprilkeepkgkekevdgll 593
Cdd:COG5180    391 KSPSTKHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVL--FGKSFNMFIKSKEAHD------------------------ 444
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  594 tSEPMGsPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPpcpsqtgsppvgLIKGEDKDEGPVAEQVKKSTLNPNAKEFN 673
Cdd:COG5180    445 -EKKKG-DDASENMEPFFIEKPYFTAPTWLNTIEESYKT------------FFPDEDTAIQEAQTRFQQRQLNSMGNAVP 510
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  674 PTKPLLSVNKSTSTP-TSPGPRTHSTPSIPVLTAGQSGLYSPqyisYIPQihmgPAVQAPQMYPYPVSNSVPGQQGKY 750
Cdd:COG5180    511 GMNPAMGMNMGGMMGfPMGGPSASPNPMMNGFAAGSMGMYMP----FQPQ----PMFYHPSPQMMPVMGSNGAEEGGG 580
PHA03247 PHA03247
large tegument protein UL36; Provisional
336-949 3.09e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.94  E-value: 3.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  336 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPgpgsearginggPSRMSPKAQRP 415
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVP------------PPRPAPRPSEP 2580
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  416 LRGAKtlsspSNRPSgetsvPPPPAAPPFLPVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSasipvtssvsdpgv 495
Cdd:PHA03247  2581 AVTSR-----ARRPD-----APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAN-------------- 2636
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  496 gsiSPASPKISLAPTDVKELSTKEPGRTLEPQElARIAGKVPGLQNEQKRFQLEELRKfgaqfklqPSSSPENSLDPFPP 575
Cdd:PHA03247  2637 ---EPDPHPPPTVPPPERPRDDPAPGRVSRPRR-ARRLGRAAQASSPPQRPRRRAARP--------TVGSLTSLADPPPP 2704
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  576 rilkeepkgkekevdglltsepmgspvssktesvsdkEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLikgedkdeGP 655
Cdd:PHA03247  2705 -------------------------------------PPTPEPAPHALVSATPLPPGPAAARQASPALPA--------AP 2739
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  656 VAEQVKKSTLNPNAKEFNPTKPLlsvnksTSTPTSPGPrthstPSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMY 735
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPARPPT------TAGPPAPAP-----PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  736 PYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPmmqaaaaagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyP 815
Cdd:PHA03247  2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG----------------PPPPSLPLGGSVAPGGDVRRRPP---S 2868
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  816 SQPVFAPMLQSNP--RMLTSGSHPQAIVSSSTPQYPSAEQPTPQAlyatvhqsyPHHATQLHAHQPQPATTPTGSQPQSQ 893
Cdd:PHA03247  2869 RSPAAKPAAPARPpvRRLARPAVSRSTESFALPPDQPERPPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPPRP 2939
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1908918648  894 HAAPSPVQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSSFPQP 949
Cdd:PHA03247  2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPL 2996
PRK10263 PRK10263
DNA translocase FtsK; Provisional
815-946 2.93e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 51.62  E-value: 2.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  815 PSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP-----QYPSAEQPT-PQALYATVHQSYPHHATQLHAHQPQpATTPTGS 888
Cdd:PRK10263   740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPvapqpQYQQPQQPVaPQPQYQQPQQPVAPQPQYQQPQQPV-APQPQYQ 818
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1908918648  889 QPQSQHAAPSPVQQHQAGQAPhlgsgQPQQNLYHPGALTG----------TP-PS---LPPGPSAQSPQSSF 946
Cdd:PRK10263   819 QPQQPVAPQPQYQQPQQPVAP-----QPQDTLLHPLLMRNgdsrplhkptTPlPSldlLTPPPSEVEPVDTF 885
PHA03247 PHA03247
large tegument protein UL36; Provisional
674-1061 4.71e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 4.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  674 PTKPLLSVNKSTSTPTSPGPrTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQ-QGKYRG 752
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAPP-SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRaRRLGRA 2673
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  753 AKGSLPPQRSdqHQPASAPPMMQAAAAAGPPLVAATPYssyiPYNPQQFPGQPAMMQPMAHYPSQPVfAPMLQSNPRMLT 832
Cdd:PHA03247  2674 AQASSPPQRP--RRRAARPTVGSLTSLADPPPPPPTPE----PAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPA 2746
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  833 SGSHPQAIVSSSTPQYPSA-EQPTPQALYATVhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPhl 911
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGpPAPAPPAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP-- 2820
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  912 gSGQPQQNLYHPGALTGTPPSLPPGPSAQS------------------PQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQA 973
Cdd:PHA03247  2821 -AASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  974 HVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRI 1053
Cdd:PHA03247  2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979

                   ....*...
gi 1908918648 1054 PPLPPPGE 1061
Cdd:PHA03247  2980 PQPAPSRE 2987
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
876-952 3.67e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.38  E-value: 3.67e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1908918648  876 AHQPQPATTPTGSQPQSqHAAPSPVQQHQAGQAphlgSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAV 952
Cdd:PRK14971   389 APQPSAAAAASPSPSQS-SAAAQPSAPQSATQP----AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
374-702 4.93e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.83  E-value: 4.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  374 PGLSSLPPRGPHHLDNSS----PGPGSEARGINGGPSRMSP----KAQRPLRGAKTLSSP--SNRPSGETSVPPPPaapp 443
Cdd:PTZ00449   514 PEASGLPPKAPGDKEGEEgeheDSKESDEPKEGGKPGETKEgevgKKPGPAKEHKPSKIPtlSKKPEFPKDPKHPK---- 589
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  444 flpvgRMYPPRSPKS--AAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPgVGSISPASPKISLAPTDVKE-LSTKEP 520
Cdd:PTZ00449   590 -----DPEEPKKPKRprSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRP-PPPQRPSSPERPEGPKIIKSpKPPKSP 663
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  521 GRTLEP---QELARIAGKVPGLQNEQKRFQL--EELRKFGAQFKLQPSSSPENSLDPFPPRIlkeepkgkekEVDGLLTS 595
Cdd:PTZ00449   664 KPPFDPkfkEKFYDDYLDAAAKSKETKTTVVldESFESILKETLPETPGTPFTTPRPLPPKL----------PRDEEFPF 733
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  596 EPMGSPVSsktESVSDKE-DKPPLAPSggtegpeqpPPPCPSQTGSPPVGLIKGEDKDEGPVAEqvkksTLNPNAKEFNP 674
Cdd:PTZ00449   734 EPIGDPDA---EQPDDIEfFTPPEEER---------TFFHETPADTPLPDILAEEFKEEDIHAE-----TGEPDEAMKRP 796
                          330       340
                   ....*....|....*....|....*...
gi 1908918648  675 TKPllsvnkSTSTPTSPGprTHstPSIP 702
Cdd:PTZ00449   797 DSP------SEHEDKPPG--DH--PSLP 814
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
821-958 6.46e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.18  E-value: 6.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  821 APMLQSNPRMLTSGSHPQaivssstPQYpsaEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPV 900
Cdd:TIGR01628  380 PRMRQLPMGSPMGGAMGQ-------PPY---YGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRN 449
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918648  901 QQHQAGQAPhlgsgqpqqnlyhpgaltgtPPSLPPGPSAQSPQSSFPQPAAVYAIHHQ 958
Cdd:TIGR01628  450 AQNAAQKPP--------------------MQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
PRK10927 PRK10927
cell division protein FtsN;
847-951 7.15e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 39.66  E-value: 7.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  847 QYPSAEQpTPQALYATVH-QSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQhQAGQAPHLGSGQPQQNLYHPGA 925
Cdd:PRK10927   138 EVPWNEQ-TPEQRQQTLQrQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQA-QPRQSKPASTQQPYQDLLQTPA 215
                           90       100
                   ....*....|....*....|....*..
gi 1908918648  926 LTGTPPSLP-PGPSAQSPQSsfPQPAA 951
Cdd:PRK10927   216 HTTAQSKPQqAAPVTRAADA--PKPTA 240
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
664-923 8.49e-03

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 40.07  E-value: 8.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  664 TLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYipQIHMGPAVQAPQMYPYPvsnsv 743
Cdd:pfam03326  310 TLVPIAGSTGVTEVVSYGHNSTSPSSTPCPSTAVTEADHQTEPEVPWIATAHQESD--QRPIGPGPEKPTFLPPV----- 382
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  744 pgqqGKYRGAKGsLPPQRSDQHQPAsappmmQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPammqpmahypsqpvfapm 823
Cdd:pfam03326  383 ----GGKQFFQG-LRDSRSTSFLTA------PEATSAISDVFQGTEVCQPKRIRALHPPGSP------------------ 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  824 lqSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYAT--VHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPvQ 901
Cdd:pfam03326  434 --SANRPLPSSLAPTPTGPVHEPGSSLTPATVPQPLDAApvATPEASHELQPPDEETPQPLDEDQALCGQQDASHPPP-R 510
                          250       260
                   ....*....|....*....|..
gi 1908918648  902 QHQAGQAPHLGSGQPQQNLYHP 923
Cdd:pfam03326  511 GQLDELTTTLESMTEDLNLDSP 532
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
834-952 8.53e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  834 GSHPQAIVSSSTPQYPSAeQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQ-PQSQHAAPSPVQQHQAGQAPHLG 912
Cdd:PRK07764   391 AGAPAAAAPSAAAAAPAA-APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAgNAPAGGAPSPPPAAAPSAQPAPA 469
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1908918648  913 SGQPQQNLYHPGAltGTPPSLPPGPSAQSPQSSFPQPAAV 952
Cdd:PRK07764   470 PAAAPEPTAAPAP--APPAAPAPAAAPAAPAAPAAPAGAD 507
dnaA PRK14086
chromosomal replication initiator protein DnaA;
842-1055 9.34e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.81  E-value: 9.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  842 SSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhahqPQPATTPTGSQ-PQSQHAAPSPVQQHQAGQAPHLGSGQPQQNL 920
Cdd:PRK14086    96 APPPPHARRTSEPELPRPGRRPYEGYGGPRAD-----DRPPGLPRQDQlPTARPAYPAYQQRPEPGAWPRAADDYGWQQQ 170
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  921 YHpgaltGTPPSLPPGPSAQSP--QSSFPQPaavYAIHHQQLPHGFtnmahvtqahvQTGITAAPPPHPGAPHPPQVMLL 998
Cdd:PRK14086   171 RL-----GFPPRAPYASPASYApeQERDREP---YDAGRPEYDQRR-----------RDYDHPRPDWDRPRRDRTDRPEP 231
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918648  999 HPPQSH---GGPPQGAVPQSGVPALSASTPSPYPyighpqgEQPGQAPGfPGGADDRIPP 1055
Cdd:PRK14086   232 PPGAGHvhrGGPGPPERDDAPVVPIRPSAPGPLA-------AQPAPAPG-PGEPTARLNP 283
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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